Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS18240

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
4,090,055	+		HGI48_RS18230	0.89	+0.1
4,090,055	+		HGI48_RS18230	0.89	+0.5
4,090,056	-		HGI48_RS18230	0.89	-0.9
4,090,056	-		HGI48_RS18230	0.89	+0.0
4,090,056	-		HGI48_RS18230	0.89	-0.1
4,090,056	-		HGI48_RS18230	0.89	-0.7
4,090,056	-				-0.7
4,090,056	-		HGI48_RS18230	0.89	-1.3
4,090,056	-		HGI48_RS18230	0.89	-1.1
4,090,056	-				-0.7
4,090,056	-		HGI48_RS18230	0.89	-0.5
4,090,056	-		HGI48_RS18230	0.89	-0.7
4,090,097	+				-0.7
4,090,098	-				-1.0
4,090,098	-				-1.1
4,090,137	+				-1.1
4,090,137	+				+0.4
4,090,137	+				+0.4
4,090,137	+				-0.1
4,090,137	+				-1.7
4,090,138	-				-0.7
4,090,138	-				-0.4
4,090,138	-				+0.9
4,090,145	+				-1.5
4,090,145	+				+0.3
4,090,145	+				-0.7
4,090,145	+				+2.4
4,090,146	-				+0.1
4,090,146	-				+0.0
4,090,178	+				-0.7
4,090,178	+				-1.1
4,090,180	+				+0.0
4,090,180	+				-0.9
4,090,180	+				-1.4
4,090,180	+				+0.9
4,090,201	+				-1.5
4,090,252	+				-0.7
4,090,252	+				-1.0
4,090,256	-				-2.9
4,090,256	-				+0.4
4,090,256	-				+0.6
4,090,256	-				+0.5
4,090,300	+				-0.5
4,090,300	+				+1.4
4,090,300	+				-0.5
4,090,300	+				-1.5
4,090,301	-				+0.0
4,090,301	-				-2.5
4,090,301	-				-1.0
4,090,301	-				-1.7
4,090,321	-				+0.1
4,090,321	-				+0.6
4,090,467	-		HGI48_RS18235	0.27	-1.5
4,090,530	-		HGI48_RS18235	0.37	+0.3
4,090,530	-		HGI48_RS18235	0.37	-0.6
4,090,530	-		HGI48_RS18235	0.37	-1.3
4,090,558	-		HGI48_RS18235	0.41	-1.5
4,090,645	+		HGI48_RS18235	0.56	-1.1
4,090,655	+				-0.7
4,090,709	-		HGI48_RS18235	0.66	-1.5
4,090,709	-		HGI48_RS18235	0.66	-1.0
4,090,719	+		HGI48_RS18235	0.68	+1.0
4,090,719	+		HGI48_RS18235	0.68	+1.5
4,090,884	+				-0.1
4,090,884	+				-1.0
4,090,884	+				+0.4
4,090,884	+				+0.2
4,090,910	+				+0.4
4,090,910	+				-1.5
4,090,910	+				+1.7
4,090,911	-				+0.4
4,090,915	+				-0.5
4,090,915	+				+0.1
4,090,916	-				+0.9
4,090,931	+				-0.4
4,090,932	-				+1.3
4,090,932	-				-0.2
4,090,972	+				+0.7
4,090,982	+				-1.1
4,091,012	+				-1.1
4,091,019	+				-1.8
4,091,124	+				-0.6
4,091,125	-				-0.3
4,091,134	+				-2.1
4,091,135	-				+2.4
4,091,135	-				-1.5
4,091,135	-				-1.1
4,091,135	-				-1.1
4,091,135	-				-0.3
4,091,135	-				-0.1
4,091,135	-				-1.3
4,091,135	-				-0.9
4,091,135	-				-4.3
4,091,135	-				-1.9
4,091,135	-				-2.5
4,091,135	-				+0.4
4,091,135	-				-0.1
4,091,136	+				-2.3
4,091,136	+				-3.0
4,091,136	+				-1.1
4,091,137	-				-0.5
4,091,137	-				+0.3
4,091,208	+				-1.5
4,091,208	+				-0.7
4,091,208	+				+0.3
4,091,208	+				-2.8
4,091,208	+				-0.4
4,091,208	+				-2.8
4,091,208	+				+0.3
4,091,208	+				-0.1
4,091,209	-				-1.3
4,091,209	-				-0.9
4,091,209	-				-0.7
4,091,209	-				-0.4
4,091,209	-				-1.7
4,091,214	+				-1.7
4,091,215	-				+0.4
4,091,581	-		HGI48_RS18240	0.17	-2.3
4,091,581	-		HGI48_RS18240	0.17	-1.9
4,091,584	-		HGI48_RS18240	0.18	-1.8
4,091,693	+		HGI48_RS18240	0.21	-2.6
4,091,730	+		HGI48_RS18240	0.22	-1.5
4,091,730	+		HGI48_RS18240	0.22	-1.7
4,091,730	+		HGI48_RS18240	0.22	+0.5
4,091,730	+		HGI48_RS18240	0.22	-0.9
4,091,730	+		HGI48_RS18240	0.22	-1.3
4,091,847	+		HGI48_RS18240	0.26	-1.1
4,091,848	-		HGI48_RS18240	0.26	+0.9
4,091,883	-				-0.7
4,091,883	-		HGI48_RS18240	0.27	-1.7
4,091,883	-		HGI48_RS18240	0.27	+0.9
4,091,883	-		HGI48_RS18240	0.27	-2.5
4,091,899	+		HGI48_RS18240	0.27	-2.5
4,091,899	+		HGI48_RS18240	0.27	-2.3
4,091,900	-				+2.5
4,091,900	-		HGI48_RS18240	0.27	-1.7
4,091,900	-		HGI48_RS18240	0.27	-1.7
4,091,944	+				-0.7
4,091,944	+		HGI48_RS18240	0.29	-2.3
4,091,945	-		HGI48_RS18240	0.29	+0.2
4,092,034	-		HGI48_RS18240	0.32	-0.1
4,092,090	+		HGI48_RS18240	0.33	-2.6
4,092,090	+		HGI48_RS18240	0.33	-2.7
4,092,090	+		HGI48_RS18240	0.33	-1.7
4,092,091	-		HGI48_RS18240	0.33	-1.7
4,092,091	-		HGI48_RS18240	0.33	+0.6
4,092,318	+		HGI48_RS18240	0.40	+0.3
4,092,354	-		HGI48_RS18240	0.41	-1.6
4,092,354	-		HGI48_RS18240	0.41	+0.5
4,092,393	+		HGI48_RS18240	0.43	-1.4
4,092,394	-		HGI48_RS18240	0.43	-1.5
4,092,557	+		HGI48_RS18240	0.48	-3.4
4,092,557	+		HGI48_RS18240	0.48	-1.1
4,092,557	+		HGI48_RS18240	0.48	+1.1
4,092,558	-				-0.7
4,092,558	-		HGI48_RS18240	0.48	-2.7
4,092,558	-		HGI48_RS18240	0.48	-1.1
4,092,603	+		HGI48_RS18240	0.49	-2.1
4,092,603	+		HGI48_RS18240	0.49	-0.1
4,092,603	+		HGI48_RS18240	0.49	-1.9
4,092,612	+		HGI48_RS18240	0.49	+1.1
4,092,612	+		HGI48_RS18240	0.49	-1.5
4,092,613	-		HGI48_RS18240	0.49	-0.0
4,092,618	+		HGI48_RS18240	0.50	-2.3
4,092,618	+		HGI48_RS18240	0.50	-2.8
4,092,619	-		HGI48_RS18240	0.50	-1.9
4,092,619	-				-0.7
4,092,619	-				-0.7
4,092,666	+		HGI48_RS18240	0.51	-2.3
4,092,667	-		HGI48_RS18240	0.51	-1.9
4,092,684	+		HGI48_RS18240	0.52	+0.3
4,092,684	+		HGI48_RS18240	0.52	-0.7
4,092,685	-		HGI48_RS18240	0.52	-1.1
4,092,690	+		HGI48_RS18240	0.52	-0.6
4,092,691	-		HGI48_RS18240	0.52	-0.3
4,092,816	-		HGI48_RS18240	0.56	-2.7
4,092,937	+		HGI48_RS18240	0.60	-2.3
4,092,938	-		HGI48_RS18240	0.60	-2.5
4,092,938	-				-0.1
4,093,183	-		HGI48_RS18240	0.67	-0.8
4,093,252	+				-0.7
4,093,253	-		HGI48_RS18240	0.69	-1.7
4,093,253	-				-0.1
4,093,253	-				-0.7
4,093,253	-		HGI48_RS18240	0.69	-1.9
4,093,255	-		HGI48_RS18240	0.69	-1.5
4,093,255	-		HGI48_RS18240	0.69	-1.5
4,093,413	-		HGI48_RS18240	0.74	-3.6
4,093,448	-		HGI48_RS18240	0.75	-2.8
4,093,597	-		HGI48_RS18240	0.80	-2.7
4,093,597	-		HGI48_RS18240	0.80	-3.0
4,093,695	+		HGI48_RS18240	0.83	-0.5
4,093,695	+		HGI48_RS18240	0.83	-2.6
4,093,753	-		HGI48_RS18240	0.85	-0.1
4,093,985	+				-1.5
4,094,047	+				-0.9
4,094,048	-				+1.9
4,094,049	+				-1.1
4,094,049	+				-0.1
4,094,049	+				-0.7
4,094,050	-				-1.1
4,094,050	-				-0.7
4,094,050	-				-0.1
4,094,050	-				-1.8
4,094,050	-				+0.3
4,094,050	-				-2.5
4,094,050	-				-4.9
4,094,050	-				-1.3
4,094,053	+				-1.5
4,094,140	+				-2.7
4,094,141	-				-2.1
4,094,161	-				-1.9
4,094,216	-				-0.4
4,094,222	+				-2.5
4,094,222	+				-0.0
4,094,222	+				-0.1
4,094,223	-				-1.1
4,094,223	-				-1.3
4,094,223	-				+0.3
4,094,223	-				-0.7
4,094,223	-				-3.3
4,094,231	-				-1.1
4,094,266	-				+0.9
4,094,331	+				-2.3
4,094,332	-				-0.5
4,094,332	-				+0.3
4,094,344	+				-0.9
4,094,344	+				-0.7
4,094,345	-				-2.3
4,094,350	-				+0.9
4,094,636	-				-0.1
4,094,866	+		HGI48_RS18245	0.47	-0.3
4,094,867	-		HGI48_RS18245	0.47	+0.5
4,094,967	-				-0.7
4,095,160	+		HGI48_RS18245	0.72	-2.5
4,095,160	+				-0.1
4,095,161	-		HGI48_RS18245	0.72	-1.8
4,095,161	-		HGI48_RS18245	0.72	-1.9
4,095,161	-		HGI48_RS18245	0.72	-2.1
4,095,161	-		HGI48_RS18245	0.72	-1.3
4,095,178	-		HGI48_RS18245	0.74	-0.5
4,095,205	-		HGI48_RS18245	0.76	-1.7