Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16305

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
3,655,022	-		HGI48_RS16295	0.78	+0.7
3,655,055	+		HGI48_RS16295	0.83	-0.9
3,655,056	-		HGI48_RS16295	0.83	+1.1
3,655,056	-		HGI48_RS16295	0.83	-1.9
3,655,079	+		HGI48_RS16295	0.86	-0.9
3,655,079	+		HGI48_RS16295	0.86	-0.9
3,655,080	-		HGI48_RS16295	0.86	-2.4
3,655,107	+		HGI48_RS16295	0.89	-0.1
3,655,108	-		HGI48_RS16295	0.89	-1.3
3,655,108	-		HGI48_RS16295	0.89	+1.0
3,655,108	-		HGI48_RS16295	0.89	+0.7
3,655,108	-		HGI48_RS16295	0.89	+0.1
3,655,110	+		HGI48_RS16295	0.90	-0.3
3,655,110	+		HGI48_RS16295	0.90	-0.6
3,655,110	+		HGI48_RS16295	0.90	-2.3
3,655,111	-		HGI48_RS16295	0.90	-0.6
3,655,151	+				-0.6
3,655,170	+				+0.7
3,655,171	-				+1.3
3,655,171	-				-0.9
3,655,171	-				-0.1
3,655,226	+				+0.2
3,655,226	+				-1.6
3,655,227	-				-0.6
3,655,239	+				-0.5
3,655,240	-				-1.3
3,655,266	+				-0.9
3,655,266	+				+0.5
3,655,266	+				-0.2
3,655,274	+				-0.3
3,655,275	-				+2.0
3,655,275	-				-0.1
3,655,286	-				+0.7
3,655,413	+				+0.7
3,655,413	+		HGI48_RS16300	0.24	-1.0
3,655,413	+		HGI48_RS16300	0.24	+0.5
3,655,413	+		HGI48_RS16300	0.24	-1.3
3,655,417	+		HGI48_RS16300	0.25	-1.6
3,655,469	-		HGI48_RS16300	0.35	-0.3
3,655,542	+		HGI48_RS16300	0.49	+1.2
3,655,542	+		HGI48_RS16300	0.49	-0.7
3,655,543	-		HGI48_RS16300	0.49	+0.5
3,655,543	-		HGI48_RS16300	0.49	+0.1
3,655,564	+		HGI48_RS16300	0.53	-0.3
3,655,565	-		HGI48_RS16300	0.53	+1.1
3,655,574	-				+0.7
3,655,615	+		HGI48_RS16300	0.63	+0.2
3,655,616	-		HGI48_RS16300	0.63	+0.4
3,655,675	+		HGI48_RS16300	0.75	+1.3
3,655,675	+		HGI48_RS16300	0.75	-0.0
3,655,676	-		HGI48_RS16300	0.75	-2.7
3,655,692	-		HGI48_RS16300	0.78	-0.4
3,655,692	-		HGI48_RS16300	0.78	+0.1
3,655,765	+				-1.3
3,655,766	-				-1.3
3,655,766	-				-0.5
3,655,772	-				-0.3
3,655,783	+				+0.1
3,655,789	+				-0.0
3,655,790	-				+1.0
3,655,790	-				-1.9
3,655,790	-				+0.3
3,655,793	+				-2.1
3,655,793	+				-0.6
3,655,793	+				+0.7
3,655,793	+				+1.3
3,655,793	+				-0.9
3,655,793	+				+0.4
3,655,793	+				-1.3
3,655,793	+				-0.1
3,655,794	-				+1.1
3,655,794	-				-0.1
3,655,794	-				+0.4
3,655,794	-				-1.3
3,655,794	-				-0.3
3,655,794	-				-1.4
3,655,797	-				-0.8
3,655,797	-				-0.2
3,655,797	-				-0.5
3,655,810	+				+1.3
3,655,810	+				+2.3
3,655,811	-				+1.0
3,655,811	-				+0.1
3,655,893	+				+2.5
3,655,893	+				-2.6
3,655,893	+				-2.3
3,655,893	+				-0.4
3,655,893	+				+0.1
3,655,894	-				-0.0
3,655,894	-				-0.9
3,655,894	-				+2.2
3,655,896	+				-2.0
3,655,897	-				-0.3
3,655,909	-				+1.7
3,655,912	-				-0.0
3,655,991	+				+1.1
3,656,007	-				-1.3
3,656,007	-				-0.3
3,656,079	+				+0.7
3,656,080	-				-0.9
3,656,261	+		HGI48_RS16305	0.17	-1.6
3,656,268	+		HGI48_RS16305	0.18	-1.3
3,656,268	+		HGI48_RS16305	0.18	+0.2
3,656,269	-		HGI48_RS16305	0.18	+0.3
3,656,269	-		HGI48_RS16305	0.18	+0.5
3,656,269	-				+1.3
3,656,306	-				+1.1
3,656,389	-		HGI48_RS16305	0.26	-0.6
3,656,422	-		HGI48_RS16305	0.28	-0.6
3,656,422	-		HGI48_RS16305	0.28	-0.5
3,656,565	+		HGI48_RS16305	0.37	+0.2
3,656,568	-		HGI48_RS16305	0.37	-2.1
3,656,568	-		HGI48_RS16305	0.37	-1.7
3,656,645	+		HGI48_RS16305	0.42	-0.3
3,656,645	+		HGI48_RS16305	0.42	-1.3
3,656,646	-		HGI48_RS16305	0.42	-0.1
3,656,646	-		HGI48_RS16305	0.42	-0.6
3,656,676	+		HGI48_RS16305	0.44	-1.3
3,656,723	+		HGI48_RS16305	0.47	-2.2
3,656,723	+				-0.3
3,656,768	+		HGI48_RS16305	0.50	-1.9
3,656,768	+		HGI48_RS16305	0.50	+0.2
3,656,815	-		HGI48_RS16305	0.53	-1.3
3,656,820	+		HGI48_RS16305	0.53	-0.9
3,656,822	+		HGI48_RS16305	0.54	-1.1
3,656,822	+		HGI48_RS16305	0.54	-0.3
3,656,823	-		HGI48_RS16305	0.54	-0.7
3,656,823	-		HGI48_RS16305	0.54	-0.8
3,656,864	+		HGI48_RS16305	0.56	-0.3
3,656,984	+		HGI48_RS16305	0.64	-0.9
3,656,984	+		HGI48_RS16305	0.64	-1.3
3,656,985	-		HGI48_RS16305	0.64	-0.7
3,657,048	+		HGI48_RS16305	0.68	-0.9
3,657,048	+		HGI48_RS16305	0.68	-2.1
3,657,049	-		HGI48_RS16305	0.68	-0.4
3,657,049	-		HGI48_RS16305	0.68	+0.9
3,657,092	+		HGI48_RS16305	0.71	-2.3
3,657,093	-		HGI48_RS16305	0.71	+1.5
3,657,154	+		HGI48_RS16305	0.75	+0.5
3,657,154	+		HGI48_RS16305	0.75	+1.7
3,657,154	+				-0.9
3,657,188	+		HGI48_RS16305	0.77	-1.0
3,657,188	+				+0.7
3,657,189	-		HGI48_RS16305	0.77	-0.7
3,657,234	+		HGI48_RS16305	0.80	+0.4
3,657,234	+		HGI48_RS16305	0.80	-0.5
3,657,238	+				+0.1
3,657,278	+		HGI48_RS16305	0.83	-0.9
3,657,279	-		HGI48_RS16305	0.83	-1.3
3,657,288	+		HGI48_RS16305	0.84	+0.2
3,657,296	-		HGI48_RS16305	0.84	-1.6
3,657,567	+				+0.2
3,657,567	+				+0.0
3,657,567	+				+0.1
3,657,568	-				-0.4
3,657,568	-				-0.3
3,657,568	-				-0.0
3,657,576	+				-0.3
3,657,579	+				-1.1
3,657,579	+				+0.7
3,657,579	+				-0.3
3,657,595	+				+0.6
3,657,595	+				-0.6
3,657,595	+				+1.0
3,657,595	+				-1.9
3,657,595	+				+0.4
3,657,595	+				+1.2
3,657,596	-				+1.0
3,657,596	-				+0.5
3,657,596	-				-1.1
3,657,596	-				-0.9
3,657,597	+				+1.1
3,657,597	+				-0.4
3,657,597	+				+2.3
3,657,597	+				-0.8
3,657,598	-				-0.5
3,657,618	+				+0.4
3,657,618	+				+0.4
3,657,698	+		HGI48_RS16310	0.17	-0.5
3,657,698	+		HGI48_RS16310	0.17	+1.7
3,657,699	-		HGI48_RS16310	0.17	+0.7
3,657,699	-		HGI48_RS16310	0.17	-0.6
3,657,699	-		HGI48_RS16310	0.17	-0.0
3,657,702	+		HGI48_RS16310	0.18	+0.4
3,657,702	+		HGI48_RS16310	0.18	+0.1
3,657,702	+		HGI48_RS16310	0.18	+1.3
3,657,703	-		HGI48_RS16310	0.18	-0.1
3,657,705	+				-0.9
3,657,706	-				-0.9
3,657,753	+		HGI48_RS16310	0.30	-1.3
3,657,753	+				+1.3
3,657,753	+		HGI48_RS16310	0.30	-1.6
3,657,753	+		HGI48_RS16310	0.30	-0.6
3,657,753	+		HGI48_RS16310	0.30	+1.1
3,657,753	+		HGI48_RS16310	0.30	-0.1
3,657,753	+		HGI48_RS16310	0.30	-0.9
3,657,753	+				-0.9
3,657,754	-				-0.3
3,657,754	-		HGI48_RS16310	0.30	-0.9
3,657,754	-		HGI48_RS16310	0.30	-1.6
3,657,754	-		HGI48_RS16310	0.30	-0.9
3,657,754	-		HGI48_RS16310	0.30	-1.6
3,657,754	-				+2.5
3,657,754	-		HGI48_RS16310	0.30	+0.7
3,657,755	+		HGI48_RS16310	0.31	+1.0
3,657,755	+		HGI48_RS16310	0.31	-0.7
3,657,779	+		HGI48_RS16310	0.36	-2.0
3,657,779	+		HGI48_RS16310	0.36	+0.1
3,657,780	-		HGI48_RS16310	0.36	+1.3
3,657,783	+		HGI48_RS16310	0.37	-0.9
3,657,783	+				+1.5
3,657,783	+		HGI48_RS16310	0.37	-0.7
3,657,783	+		HGI48_RS16310	0.37	-2.3
3,657,783	+		HGI48_RS16310	0.37	+0.5
3,657,783	+		HGI48_RS16310	0.37	+0.5
3,657,784	-		HGI48_RS16310	0.37	-0.3
3,657,784	-		HGI48_RS16310	0.37	-2.3
3,657,784	-		HGI48_RS16310	0.37	-0.0
3,657,849	-		HGI48_RS16310	0.52	+0.1
3,657,875	+		HGI48_RS16310	0.59	-0.3
3,657,876	-				-0.3
3,657,899	+				+1.1
3,657,900	-		HGI48_RS16310	0.64	-0.6
3,657,900	-		HGI48_RS16310	0.64	-0.3
3,657,900	-		HGI48_RS16310	0.64	+0.6
3,657,902	+		HGI48_RS16310	0.65	-0.3
3,657,903	-		HGI48_RS16310	0.65	-1.9
3,657,903	-		HGI48_RS16310	0.65	+0.6
3,657,918	-		HGI48_RS16310	0.69	-0.7
3,657,918	-		HGI48_RS16310	0.69	-0.3
3,657,951	+		HGI48_RS16310	0.76	+0.1
3,658,061	+				-1.3
3,658,061	+				+0.7
3,658,062	-				-0.3
3,658,062	-				-1.0
3,658,072	+				-1.3
3,658,078	+				-0.6
3,658,078	+				+1.1
3,658,154	+		HGI48_RS16315	0.19	+0.7
3,658,154	+		HGI48_RS16315	0.19	-2.1
3,658,155	-		HGI48_RS16315	0.19	-2.3
3,658,192	+		HGI48_RS16315	0.25	-1.9
3,658,193	-		HGI48_RS16315	0.25	+0.8
3,658,320	+		HGI48_RS16315	0.48	+0.5
3,658,320	+		HGI48_RS16315	0.48	+0.1
3,658,320	+		HGI48_RS16315	0.48	+0.4
3,658,321	-		HGI48_RS16315	0.48	-0.3
3,658,321	-				-0.3
3,658,356	-				+1.1
3,658,356	-		HGI48_RS16315	0.54	-2.1
3,658,356	-		HGI48_RS16315	0.54	-0.0
3,658,409	-		HGI48_RS16315	0.63	-0.9
3,658,441	+		HGI48_RS16315	0.69	-0.4
3,658,442	-		HGI48_RS16315	0.69	+1.1
3,658,503	+		HGI48_RS16315	0.80	-0.7
3,658,504	-		HGI48_RS16315	0.80	+0.4
3,658,510	+		HGI48_RS16315	0.81	-0.2
3,658,510	+		HGI48_RS16315	0.81	+1.1
3,658,511	-		HGI48_RS16315	0.81	+1.7
3,658,511	-				+0.7
3,658,515	+		HGI48_RS16315	0.82	+0.5
3,658,515	+		HGI48_RS16315	0.82	-0.1
3,658,515	+		HGI48_RS16315	0.82	+0.9
3,658,516	-		HGI48_RS16315	0.82	-0.0
3,658,516	-		HGI48_RS16315	0.82	+0.3