Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14285

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS14275 and HGI48_RS14280 are separated by 16 nucleotidesHGI48_RS14280 and HGI48_RS14285 overlap by 4 nucleotidesHGI48_RS14285 and HGI48_RS14290 are separated by 114 nucleotides HGI48_RS14275: HGI48_RS14275 - NADH-quinone oxidoreductase subunit NuoI, at 3,205,138 to 3,205,680 _RS14275 HGI48_RS14280: HGI48_RS14280 - NADH-quinone oxidoreductase subunit NuoH, at 3,205,697 to 3,206,671 _RS14280 HGI48_RS14285: HGI48_RS14285 - NADH-quinone oxidoreductase subunit NuoG, at 3,206,668 to 3,209,394 _RS14285 HGI48_RS14290: HGI48_RS14290 - NADH-quinone oxidoreductase subunit NuoF, at 3,209,509 to 3,210,858 _RS14290 Position (kb) 3206 3207 3208 3209 3210Strain fitness (log2 ratio) -2 -1 0 1at 3205.686 kb on - strandat 3205.686 kb on - strandat 3205.947 kb on + strand, within HGI48_RS14280at 3205.948 kb on - strand, within HGI48_RS14280at 3206.119 kb on + strand, within HGI48_RS14280at 3206.120 kb on - strand, within HGI48_RS14280at 3206.399 kb on - strand, within HGI48_RS14280at 3206.948 kb on + strand, within HGI48_RS14285at 3207.269 kb on + strand, within HGI48_RS14285at 3207.419 kb on + strand, within HGI48_RS14285at 3209.168 kb on + strandat 3209.788 kb on - strand, within HGI48_RS14290

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,205,686 - +0.6
3,205,686 - -1.8
3,205,947 + HGI48_RS14280 0.26 -1.8
3,205,948 - HGI48_RS14280 0.26 -0.6
3,206,119 + HGI48_RS14280 0.43 -0.1
3,206,120 - HGI48_RS14280 0.43 -0.6
3,206,399 - HGI48_RS14280 0.72 +0.6
3,206,948 + HGI48_RS14285 0.10 -0.9
3,207,269 + HGI48_RS14285 0.22 -0.3
3,207,419 + HGI48_RS14285 0.28 -1.8
3,209,168 + -1.0
3,209,788 - HGI48_RS14290 0.21 -1.4

Or see this region's nucleotide sequence