Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09035

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
1,944,559	+				-1.1
1,944,560	-				+0.2
1,944,604	+				-0.9
1,944,604	+				-0.5
1,944,605	-				-2.0
1,944,645	+				+0.2
1,944,645	+				+0.3
1,944,646	-				+0.3
1,944,661	-				-2.3
1,944,800	+		HGI48_RS09030	0.47	-0.0
1,944,852	+		HGI48_RS09030	0.61	+0.0
1,945,009	+				+1.0
1,945,019	+				-0.5
1,945,019	+				+0.4
1,945,020	-				-0.1
1,945,020	-				-2.1
1,945,020	-				-1.5
1,945,020	-				+1.0
1,945,020	-				-1.9
1,945,041	-				+1.2
1,945,041	-				-1.0
1,945,096	-				+0.1
1,945,183	-				+1.5
1,945,204	+				-0.7
1,945,216	-				+0.5
1,945,253	-				+0.5
1,945,307	+				-2.5
1,945,321	+				+0.0
1,945,321	+				-0.7
1,945,321	+				-0.1
1,945,326	-				-0.9
1,945,354	+				-0.1
1,945,358	+				+1.5
1,945,358	+				+1.2
1,945,359	-				+0.5
1,945,442	+				+0.0
1,945,443	-				+0.7
1,945,443	-				-2.1
1,945,471	-				+1.2
1,945,609	+		HGI48_RS09035	0.10	-0.5
1,945,627	-		HGI48_RS09035	0.12	-0.5
1,945,713	+		HGI48_RS09035	0.21	-0.5
1,945,714	-		HGI48_RS09035	0.21	-0.7
1,945,714	-		HGI48_RS09035	0.21	-0.1
1,945,725	+		HGI48_RS09035	0.22	-1.5
1,945,725	+		HGI48_RS09035	0.22	+0.0
1,945,725	+		HGI48_RS09035	0.22	+3.2
1,945,725	+		HGI48_RS09035	0.22	-1.4
1,945,725	+		HGI48_RS09035	0.22	+0.0
1,945,726	-		HGI48_RS09035	0.22	-1.9
1,945,726	-				-0.5
1,945,735	+				+2.8
1,945,756	+		HGI48_RS09035	0.25	+0.9
1,945,803	+		HGI48_RS09035	0.30	-1.9
1,945,804	-		HGI48_RS09035	0.30	-0.1
1,945,804	-		HGI48_RS09035	0.30	-2.7
1,945,837	+				+1.0
1,945,838	-		HGI48_RS09035	0.34	-1.3
1,945,918	-		HGI48_RS09035	0.42	-0.1
1,945,918	-				-1.1
1,945,934	-		HGI48_RS09035	0.44	-0.2
1,945,934	-		HGI48_RS09035	0.44	+0.5
1,945,934	-		HGI48_RS09035	0.44	-0.9
1,946,008	+		HGI48_RS09035	0.51	-0.8
1,946,008	+		HGI48_RS09035	0.51	+0.8
1,946,008	+		HGI48_RS09035	0.51	-0.5
1,946,008	+				+1.2
1,946,009	-		HGI48_RS09035	0.51	-1.9
1,946,009	-		HGI48_RS09035	0.51	-2.1
1,946,160	+		HGI48_RS09035	0.67	-1.9
1,946,161	-		HGI48_RS09035	0.67	-2.7
1,946,179	+		HGI48_RS09035	0.69	-1.5
1,946,180	-		HGI48_RS09035	0.69	+0.5
1,946,185	+		HGI48_RS09035	0.69	+0.5
1,946,186	-		HGI48_RS09035	0.70	-2.4
1,946,193	+				+1.0
1,946,194	-		HGI48_RS09035	0.70	-0.2
1,946,194	-		HGI48_RS09035	0.70	-2.1
1,946,213	+		HGI48_RS09035	0.72	-0.3
1,946,213	+		HGI48_RS09035	0.72	-1.9
1,946,213	+		HGI48_RS09035	0.72	-2.1
1,946,213	+		HGI48_RS09035	0.72	-0.3
1,946,213	+				-1.1
1,946,213	+				+1.7
1,946,213	+		HGI48_RS09035	0.72	+0.6
1,946,213	+		HGI48_RS09035	0.72	-1.0
1,946,213	+		HGI48_RS09035	0.72	-0.7
1,946,214	-		HGI48_RS09035	0.72	-0.8
1,946,214	-		HGI48_RS09035	0.72	-1.0
1,946,214	-				+0.5
1,946,214	-		HGI48_RS09035	0.72	-0.4
1,946,214	-		HGI48_RS09035	0.72	-0.5
1,946,214	-		HGI48_RS09035	0.72	+0.8
1,946,244	+		HGI48_RS09035	0.76	+0.1
1,946,244	+				+0.5
1,946,245	-		HGI48_RS09035	0.76	-1.7
1,946,245	-		HGI48_RS09035	0.76	-0.3
1,946,245	-				-1.1
1,946,254	-		HGI48_RS09035	0.77	+0.8
1,946,308	+				+2.3
1,946,309	-		HGI48_RS09035	0.82	-1.9
1,946,314	+		HGI48_RS09035	0.83	+0.7
1,946,342	+		HGI48_RS09035	0.86	+1.1
1,946,342	+		HGI48_RS09035	0.86	+1.0
1,946,342	+		HGI48_RS09035	0.86	-0.3
1,946,342	+		HGI48_RS09035	0.86	-1.1
1,946,342	+		HGI48_RS09035	0.86	+0.1
1,946,343	-		HGI48_RS09035	0.86	-1.3
1,946,343	-		HGI48_RS09035	0.86	+1.1
1,946,343	-		HGI48_RS09035	0.86	+0.2
1,946,343	-		HGI48_RS09035	0.86	-0.5
1,946,343	-		HGI48_RS09035	0.86	-0.5
1,946,343	-				-0.1
1,946,343	-		HGI48_RS09035	0.86	-1.1
1,946,343	-		HGI48_RS09035	0.86	+1.3
1,946,343	-				+0.9
1,946,346	+		HGI48_RS09035	0.86	-2.1
1,946,347	-		HGI48_RS09035	0.86	+0.5
1,946,416	-				+1.3
1,946,465	-				-0.8
1,946,510	+				+1.7
1,946,559	+				+0.1
1,946,572	-				+2.4
1,946,576	+				+1.5
1,946,576	+				-0.3
1,946,576	+				+0.4
1,946,577	-				-1.9
1,946,577	-				+0.2
1,946,577	-				-2.1
1,946,605	+				-0.1
1,946,618	+				+1.0
1,946,618	+				-0.0
1,946,687	+				+1.0
1,946,687	+				-0.3
1,946,687	+				-0.7
1,946,688	-				+2.0
1,946,688	-				+1.2
1,946,688	-				-1.5
1,946,688	-				+0.1
1,946,688	-				+0.9
1,946,695	-				-0.3
1,946,708	+				+0.5
1,946,709	-				-1.5
1,946,752	-				+0.7
1,946,824	-				+0.5
1,946,961	+		HGI48_RS09040	0.29	-1.9
1,946,962	-				-0.5
1,946,971	+		HGI48_RS09040	0.30	-1.1
1,946,972	-		HGI48_RS09040	0.30	+0.5
1,946,972	-				-0.5
1,946,972	-		HGI48_RS09040	0.30	-0.4
1,946,972	-				-1.1
1,946,973	+		HGI48_RS09040	0.30	-2.1
1,946,974	-		HGI48_RS09040	0.30	+0.3
1,946,974	-		HGI48_RS09040	0.30	-0.9
1,946,974	-		HGI48_RS09040	0.30	-1.1
1,946,974	-		HGI48_RS09040	0.30	+0.1
1,947,069	-		HGI48_RS09040	0.42	+0.1
1,947,157	+		HGI48_RS09040	0.53	-1.6
1,947,157	+		HGI48_RS09040	0.53	+0.1
1,947,187	+		HGI48_RS09040	0.57	-1.4
1,947,313	+		HGI48_RS09040	0.72	-0.5
1,947,314	-		HGI48_RS09040	0.72	+1.4
1,947,336	-		HGI48_RS09040	0.75	-1.9
1,947,336	-		HGI48_RS09040	0.75	-0.0
1,947,389	+		HGI48_RS09040	0.82	+0.2
1,947,389	+		HGI48_RS09040	0.82	-0.5
1,947,390	-		HGI48_RS09040	0.82	+0.0
1,947,390	-		HGI48_RS09040	0.82	-2.3
1,947,390	-		HGI48_RS09040	0.82	+0.0
1,947,390	-		HGI48_RS09040	0.82	+0.5
1,947,408	+				+2.9
1,947,473	+				+0.0
1,947,481	+				+0.3