Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06795

Experiment: Norland

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS06790 and HGI48_RS06795 are separated by 79 nucleotidesHGI48_RS06795 and HGI48_RS06800 are separated by 79 nucleotides HGI48_RS06790: HGI48_RS06790 - glycosyl transferase, at 1,439,533 to 1,440,399 _RS06790 HGI48_RS06795: HGI48_RS06795 - glycosyltransferase, at 1,440,479 to 1,441,336 _RS06795 HGI48_RS06800: HGI48_RS06800 - rhamnosyltransferase, at 1,441,416 to 1,442,324 _RS06800 Position (kb) 1440 1441 1442Strain fitness (log2 ratio) -2 -1 0 1at 1439.643 kb on + strand, within HGI48_RS06790at 1439.733 kb on + strand, within HGI48_RS06790at 1439.915 kb on + strand, within HGI48_RS06790at 1439.915 kb on + strandat 1440.001 kb on - strand, within HGI48_RS06790at 1440.053 kb on + strandat 1440.101 kb on + strand, within HGI48_RS06790at 1440.235 kb on - strandat 1440.246 kb on - strand, within HGI48_RS06790at 1440.370 kb on + strandat 1440.407 kb on - strandat 1440.994 kb on - strand, within HGI48_RS06795at 1441.335 kb on - strandat 1441.490 kb on + strandat 1441.838 kb on + strand, within HGI48_RS06800at 1441.921 kb on + strand, within HGI48_RS06800at 1442.274 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Norland
remove
1,439,643 + HGI48_RS06790 0.13 +0.6
1,439,733 + HGI48_RS06790 0.23 +0.3
1,439,915 + HGI48_RS06790 0.44 -2.2
1,439,915 + +1.6
1,440,001 - HGI48_RS06790 0.54 -0.2
1,440,053 + -1.0
1,440,101 + HGI48_RS06790 0.66 -2.0
1,440,235 - -0.4
1,440,246 - HGI48_RS06790 0.82 -0.0
1,440,370 + +0.0
1,440,407 - -1.0
1,440,994 - HGI48_RS06795 0.60 -2.2
1,441,335 - -0.6
1,441,490 + -0.1
1,441,838 + HGI48_RS06800 0.46 -1.0
1,441,921 + HGI48_RS06800 0.56 +0.0
1,442,274 - +0.6

Or see this region's nucleotide sequence