Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04720 and HGI48_RS04725 are separated by 2 nucleotides HGI48_RS04725 and HGI48_RS04730 are separated by 814 nucleotides HGI48_RS04730 and HGI48_RS04735 are separated by 30 nucleotides
HGI48_RS04720: HGI48_RS04720 - hypothetical protein, at 990,158 to 990,442
_RS04720
HGI48_RS04725: HGI48_RS04725 - HTH domain-containing protein, at 990,445 to 990,563
_RS04725
HGI48_RS04730: HGI48_RS04730 - hypothetical protein, at 991,378 to 992,454
_RS04730
HGI48_RS04735: HGI48_RS04735 - hypothetical protein, at 992,485 to 993,561
_RS04735
Position (kb) 991
992
993 Strain fitness (log2 ratio) -2
-1
0
1
2 at 990.383 kb on - strand, within HGI48_RS04720 at 990.419 kb on - strand at 990.474 kb on + strand, within HGI48_RS04725 at 990.474 kb on + strand, within HGI48_RS04725 at 990.475 kb on - strand at 990.476 kb on + strand, within HGI48_RS04725 at 990.476 kb on + strand, within HGI48_RS04725 at 990.476 kb on + strand at 990.477 kb on - strand, within HGI48_RS04725 at 990.508 kb on + strand, within HGI48_RS04725 at 990.551 kb on + strand, within HGI48_RS04725 at 990.552 kb on - strand at 990.580 kb on + strand at 990.583 kb on - strand at 990.584 kb on + strand at 990.584 kb on + strand at 990.585 kb on - strand at 990.613 kb on + strand at 990.617 kb on - strand at 990.617 kb on - strand at 990.637 kb on + strand at 990.637 kb on + strand at 990.638 kb on - strand at 990.683 kb on + strand at 990.683 kb on + strand at 990.684 kb on - strand at 990.684 kb on - strand at 990.693 kb on + strand at 990.696 kb on + strand at 990.702 kb on + strand at 990.702 kb on + strand at 990.750 kb on + strand at 990.750 kb on + strand at 990.750 kb on + strand at 990.750 kb on + strand at 990.751 kb on - strand at 990.751 kb on - strand at 990.785 kb on + strand at 990.785 kb on + strand at 990.839 kb on + strand at 990.840 kb on - strand at 990.840 kb on - strand at 990.840 kb on - strand at 990.871 kb on - strand at 990.894 kb on + strand at 990.895 kb on - strand at 990.895 kb on - strand at 990.938 kb on - strand at 991.049 kb on - strand at 991.115 kb on + strand at 991.118 kb on - strand at 991.175 kb on + strand at 991.291 kb on - strand at 991.307 kb on - strand at 991.337 kb on + strand at 991.377 kb on + strand at 991.552 kb on - strand, within HGI48_RS04730 at 991.602 kb on + strand, within HGI48_RS04730 at 991.604 kb on + strand, within HGI48_RS04730 at 991.626 kb on + strand, within HGI48_RS04730 at 991.801 kb on - strand, within HGI48_RS04730 at 991.907 kb on + strand, within HGI48_RS04730 at 991.908 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.087 kb on - strand, within HGI48_RS04730 at 992.088 kb on + strand, within HGI48_RS04730 at 992.088 kb on + strand, within HGI48_RS04730 at 992.168 kb on - strand, within HGI48_RS04730 at 992.178 kb on + strand, within HGI48_RS04730 at 992.179 kb on - strand, within HGI48_RS04730 at 992.184 kb on - strand, within HGI48_RS04730 at 992.184 kb on - strand, within HGI48_RS04730 at 992.649 kb on - strand, within HGI48_RS04735 at 992.733 kb on + strand, within HGI48_RS04735 at 992.733 kb on + strand, within HGI48_RS04735 at 992.734 kb on - strand, within HGI48_RS04735 at 993.094 kb on - strand, within HGI48_RS04735 at 993.098 kb on + strand at 993.117 kb on - strand, within HGI48_RS04735 at 993.347 kb on + strand, within HGI48_RS04735 at 993.401 kb on + strand, within HGI48_RS04735 at 993.402 kb on - strand, within HGI48_RS04735
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 990,383 - HGI48_RS04720 0.79 -0.7 990,419 - -0.5 990,474 + HGI48_RS04725 0.24 +0.8 990,474 + HGI48_RS04725 0.24 -0.5 990,475 - -0.8 990,476 + HGI48_RS04725 0.26 -2.4 990,476 + HGI48_RS04725 0.26 -0.4 990,476 + +0.2 990,477 - HGI48_RS04725 0.27 +0.0 990,508 + HGI48_RS04725 0.53 -1.2 990,551 + HGI48_RS04725 0.89 -1.2 990,552 - -0.9 990,580 + -1.2 990,583 - -1.2 990,584 + +1.0 990,584 + -0.1 990,585 - +1.5 990,613 + +1.6 990,617 - +0.0 990,617 - +0.8 990,637 + +0.2 990,637 + -0.4 990,638 - +1.6 990,683 + +0.8 990,683 + -1.4 990,684 - +0.4 990,684 - +0.8 990,693 + -1.2 990,696 + -1.2 990,702 + -0.7 990,702 + -0.2 990,750 + -0.1 990,750 + -0.2 990,750 + +0.6 990,750 + +0.9 990,751 - +0.6 990,751 - +0.0 990,785 + -0.7 990,785 + -0.7 990,839 + -1.8 990,840 - -1.6 990,840 - -2.4 990,840 - -0.8 990,871 - +0.2 990,894 + +0.1 990,895 - -0.2 990,895 - +1.8 990,938 - -0.6 991,049 - +0.1 991,115 + -1.2 991,118 - -1.6 991,175 + -0.3 991,291 - +0.5 991,307 - -0.6 991,337 + +1.0 991,377 + -0.0 991,552 - HGI48_RS04730 0.16 +0.4 991,602 + HGI48_RS04730 0.21 -1.4 991,604 + HGI48_RS04730 0.21 -1.2 991,626 + HGI48_RS04730 0.23 -0.7 991,801 - HGI48_RS04730 0.39 -2.2 991,907 + HGI48_RS04730 0.49 +0.4 991,908 - HGI48_RS04730 0.49 -1.6 992,087 - HGI48_RS04730 0.66 -0.9 992,087 - HGI48_RS04730 0.66 -1.2 992,087 - HGI48_RS04730 0.66 -1.4 992,088 + HGI48_RS04730 0.66 -1.1 992,088 + HGI48_RS04730 0.66 -0.3 992,168 - HGI48_RS04730 0.73 -1.1 992,178 + HGI48_RS04730 0.74 -2.2 992,179 - HGI48_RS04730 0.74 -0.2 992,184 - HGI48_RS04730 0.75 -0.1 992,184 - HGI48_RS04730 0.75 +0.4 992,649 - HGI48_RS04735 0.15 +0.1 992,733 + HGI48_RS04735 0.23 +0.5 992,733 + HGI48_RS04735 0.23 +0.5 992,734 - HGI48_RS04735 0.23 -0.1 993,094 - HGI48_RS04735 0.57 -1.2 993,098 + +1.7 993,117 - HGI48_RS04735 0.59 -0.8 993,347 + HGI48_RS04735 0.80 -1.4 993,401 + HGI48_RS04735 0.85 +0.7 993,402 - HGI48_RS04735 0.85 -1.7
Or see this region's nucleotide sequence