Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS04615 and HGI48_RS04620 are separated by 5 nucleotides HGI48_RS04620 and HGI48_RS04625 are separated by 0 nucleotides HGI48_RS04625 and HGI48_RS04630 are separated by 675 nucleotides
HGI48_RS04615: HGI48_RS04615 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 967,111 to 967,953
_RS04615
HGI48_RS04620: HGI48_RS04620 - queuosine precursor transporter, at 967,959 to 968,834
_RS04620
HGI48_RS04625: HGI48_RS04625 - helix-turn-helix domain-containing protein, at 968,835 to 969,449
_RS04625
HGI48_RS04630: HGI48_RS04630 - rhamnogalacturonate lyase, at 970,125 to 971,855
_RS04630
Position (kb) 968
969
970 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 967.889 kb on + strand at 967.890 kb on - strand at 967.944 kb on + strand at 967.945 kb on - strand at 967.945 kb on - strand at 967.945 kb on - strand at 967.947 kb on + strand at 967.947 kb on + strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 967.948 kb on - strand at 968.021 kb on - strand at 968.047 kb on + strand, within HGI48_RS04620 at 968.048 kb on - strand, within HGI48_RS04620 at 968.111 kb on + strand, within HGI48_RS04620 at 968.111 kb on + strand, within HGI48_RS04620 at 968.112 kb on - strand, within HGI48_RS04620 at 968.112 kb on - strand, within HGI48_RS04620 at 968.114 kb on - strand, within HGI48_RS04620 at 968.114 kb on - strand, within HGI48_RS04620 at 968.192 kb on - strand, within HGI48_RS04620 at 968.258 kb on - strand, within HGI48_RS04620 at 968.311 kb on + strand, within HGI48_RS04620 at 968.312 kb on - strand, within HGI48_RS04620 at 968.312 kb on - strand, within HGI48_RS04620 at 968.324 kb on - strand, within HGI48_RS04620 at 968.405 kb on + strand, within HGI48_RS04620 at 968.405 kb on + strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.406 kb on - strand, within HGI48_RS04620 at 968.462 kb on + strand, within HGI48_RS04620 at 968.504 kb on + strand at 968.504 kb on + strand, within HGI48_RS04620 at 968.504 kb on + strand at 968.505 kb on - strand at 968.520 kb on - strand, within HGI48_RS04620 at 968.557 kb on + strand, within HGI48_RS04620 at 968.590 kb on + strand, within HGI48_RS04620 at 968.629 kb on + strand, within HGI48_RS04620 at 968.630 kb on - strand, within HGI48_RS04620 at 968.630 kb on - strand, within HGI48_RS04620 at 968.763 kb on + strand at 968.836 kb on + strand at 968.836 kb on + strand at 968.836 kb on + strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.837 kb on - strand at 968.838 kb on + strand at 968.850 kb on + strand at 968.850 kb on + strand at 968.850 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.855 kb on + strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.856 kb on - strand at 968.857 kb on + strand at 968.857 kb on + strand at 968.857 kb on + strand at 968.858 kb on - strand at 968.858 kb on - strand at 968.858 kb on - strand at 968.858 kb on - strand at 969.056 kb on + strand, within HGI48_RS04625 at 969.056 kb on + strand, within HGI48_RS04625 at 969.056 kb on + strand, within HGI48_RS04625 at 969.080 kb on - strand, within HGI48_RS04625 at 969.103 kb on - strand, within HGI48_RS04625 at 969.197 kb on + strand, within HGI48_RS04625 at 969.197 kb on + strand, within HGI48_RS04625 at 969.198 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.230 kb on - strand, within HGI48_RS04625 at 969.303 kb on + strand at 969.308 kb on + strand, within HGI48_RS04625 at 969.325 kb on + strand, within HGI48_RS04625 at 969.326 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.330 kb on - strand, within HGI48_RS04625 at 969.335 kb on + strand, within HGI48_RS04625 at 969.393 kb on + strand at 969.393 kb on + strand at 969.393 kb on + strand at 969.394 kb on - strand at 969.394 kb on - strand at 969.398 kb on - strand at 969.398 kb on - strand at 969.416 kb on + strand at 969.417 kb on - strand at 969.417 kb on - strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.419 kb on + strand at 969.420 kb on - strand at 969.491 kb on - strand at 969.496 kb on - strand at 969.503 kb on + strand at 969.503 kb on + strand at 969.504 kb on - strand at 969.513 kb on + strand at 969.552 kb on + strand at 969.553 kb on - strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.563 kb on + strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.564 kb on - strand at 969.598 kb on - strand at 969.605 kb on + strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.606 kb on - strand at 969.646 kb on + strand at 969.647 kb on - strand at 969.655 kb on + strand at 969.658 kb on + strand at 969.659 kb on - strand at 969.662 kb on + strand at 969.663 kb on - strand at 969.690 kb on + strand at 969.719 kb on - strand at 969.741 kb on + strand at 969.742 kb on - strand at 969.744 kb on + strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.745 kb on - strand at 969.746 kb on + strand at 969.746 kb on + strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.747 kb on - strand at 969.764 kb on - strand at 969.811 kb on + strand at 969.843 kb on + strand at 969.844 kb on - strand at 969.844 kb on - strand at 969.844 kb on - strand at 969.873 kb on + strand at 969.873 kb on + strand at 969.874 kb on - strand at 969.883 kb on + strand at 969.884 kb on - strand at 969.884 kb on - strand at 969.887 kb on + strand at 969.977 kb on - strand at 969.977 kb on - strand at 970.027 kb on + strand at 970.027 kb on + strand at 970.028 kb on - strand at 970.028 kb on - strand at 970.029 kb on + strand at 970.029 kb on + strand at 970.030 kb on - strand at 970.030 kb on - strand at 970.039 kb on + strand at 970.039 kb on + strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.040 kb on - strand at 970.043 kb on + strand at 970.043 kb on + strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.044 kb on - strand at 970.055 kb on + strand at 970.056 kb on - strand at 970.057 kb on + strand at 970.057 kb on + strand at 970.058 kb on - strand at 970.159 kb on + strand at 970.159 kb on + strand at 970.160 kb on - strand at 970.160 kb on - strand at 970.212 kb on + strand at 970.213 kb on - strand at 970.236 kb on - strand at 970.277 kb on - strand at 970.297 kb on + strand at 970.408 kb on + strand, within HGI48_RS04630 at 970.408 kb on + strand, within HGI48_RS04630 at 970.408 kb on + strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.409 kb on - strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630 at 970.442 kb on + strand, within HGI48_RS04630
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 967,889 + -1.2 967,890 - -0.2 967,944 + -2.2 967,945 - -0.9 967,945 - -0.8 967,945 - -1.6 967,947 + -1.6 967,947 + -1.8 967,948 - +0.2 967,948 - -0.7 967,948 - -1.4 967,948 - -1.6 967,948 - +0.2 968,021 - -2.8 968,047 + HGI48_RS04620 0.10 +0.8 968,048 - HGI48_RS04620 0.10 +0.1 968,111 + HGI48_RS04620 0.17 +1.2 968,111 + HGI48_RS04620 0.17 +0.0 968,112 - HGI48_RS04620 0.17 +0.9 968,112 - HGI48_RS04620 0.17 +0.5 968,114 - HGI48_RS04620 0.18 +0.3 968,114 - HGI48_RS04620 0.18 +0.5 968,192 - HGI48_RS04620 0.27 +0.0 968,258 - HGI48_RS04620 0.34 +0.3 968,311 + HGI48_RS04620 0.40 -1.2 968,312 - HGI48_RS04620 0.40 -1.2 968,312 - HGI48_RS04620 0.40 +0.5 968,324 - HGI48_RS04620 0.42 -2.9 968,405 + HGI48_RS04620 0.51 +0.3 968,405 + HGI48_RS04620 0.51 +1.2 968,406 - HGI48_RS04620 0.51 +0.1 968,406 - HGI48_RS04620 0.51 +0.4 968,406 - HGI48_RS04620 0.51 +0.2 968,406 - HGI48_RS04620 0.51 +0.8 968,462 + HGI48_RS04620 0.57 -0.6 968,504 + -0.8 968,504 + HGI48_RS04620 0.62 -0.0 968,504 + -0.2 968,505 - +1.8 968,520 - HGI48_RS04620 0.64 -1.2 968,557 + HGI48_RS04620 0.68 +0.3 968,590 + HGI48_RS04620 0.72 +0.2 968,629 + HGI48_RS04620 0.76 +0.6 968,630 - HGI48_RS04620 0.77 -0.2 968,630 - HGI48_RS04620 0.77 -1.8 968,763 + -0.2 968,836 + +1.3 968,836 + -0.6 968,836 + -2.4 968,837 - +0.4 968,837 - -0.6 968,837 - +2.3 968,837 - -0.2 968,837 - +1.8 968,837 - +0.8 968,838 + -1.0 968,850 + -0.9 968,850 + -2.0 968,850 + -0.6 968,855 + -1.0 968,855 + -0.6 968,855 + -0.3 968,855 + +0.1 968,855 + -0.8 968,855 + +0.1 968,855 + +1.1 968,855 + +0.4 968,855 + -2.2 968,855 + -0.3 968,855 + -0.4 968,855 + +0.6 968,855 + +0.6 968,855 + -1.0 968,855 + -2.2 968,855 + +1.8 968,856 - +0.8 968,856 - -0.8 968,856 - -1.9 968,856 - -1.8 968,856 - +0.8 968,856 - -0.7 968,856 - -0.2 968,856 - +1.0 968,856 - +0.3 968,856 - -1.5 968,856 - +0.8 968,856 - +0.2 968,857 + -0.9 968,857 + +0.5 968,857 + +0.0 968,858 - -0.8 968,858 - +1.3 968,858 - +0.8 968,858 - -0.8 969,056 + HGI48_RS04625 0.36 +0.8 969,056 + HGI48_RS04625 0.36 +0.6 969,056 + HGI48_RS04625 0.36 -1.0 969,080 - HGI48_RS04625 0.40 +0.1 969,103 - HGI48_RS04625 0.44 -0.0 969,197 + HGI48_RS04625 0.59 +0.5 969,197 + HGI48_RS04625 0.59 -2.2 969,198 - HGI48_RS04625 0.59 -1.8 969,230 - HGI48_RS04625 0.64 -0.8 969,230 - HGI48_RS04625 0.64 +0.2 969,303 + -0.8 969,308 + HGI48_RS04625 0.77 +0.3 969,325 + HGI48_RS04625 0.80 -1.4 969,326 - HGI48_RS04625 0.80 -0.8 969,330 - HGI48_RS04625 0.80 +0.8 969,330 - HGI48_RS04625 0.80 -1.1 969,335 + HGI48_RS04625 0.81 -2.1 969,393 + -0.2 969,393 + -0.8 969,393 + -0.2 969,394 - -0.1 969,394 - -0.2 969,398 - -0.6 969,398 - +1.3 969,416 + -0.6 969,417 - -0.4 969,417 - -0.8 969,419 + -0.6 969,419 + +0.0 969,419 + -2.4 969,419 + +0.4 969,420 - -1.8 969,491 - -1.1 969,496 - -0.1 969,503 + +1.6 969,503 + +1.3 969,504 - -0.7 969,513 + +0.9 969,552 + +0.8 969,553 - -1.4 969,563 + +1.0 969,563 + -0.7 969,563 + -0.5 969,563 + +0.8 969,563 + +1.1 969,563 + -0.0 969,563 + +0.1 969,563 + +0.3 969,563 + -1.2 969,563 + -1.1 969,563 + -0.4 969,564 - -1.6 969,564 - -1.3 969,564 - -1.0 969,564 - -1.8 969,564 - -1.8 969,564 - +0.5 969,564 - +0.0 969,598 - +0.0 969,605 + +0.4 969,606 - -1.6 969,606 - -0.7 969,606 - +0.6 969,606 - +1.8 969,646 + +1.6 969,647 - +0.6 969,655 + -0.2 969,658 + -0.1 969,659 - -1.8 969,662 + +0.8 969,663 - +0.6 969,690 + -0.8 969,719 - +0.3 969,741 + -1.2 969,742 - +1.3 969,744 + -0.8 969,745 - -1.0 969,745 - +0.8 969,745 - -1.7 969,746 + -1.0 969,746 + -0.7 969,747 - -0.5 969,747 - +2.3 969,747 - -1.8 969,747 - +0.4 969,764 - -2.4 969,811 + -0.2 969,843 + +2.8 969,844 - +0.8 969,844 - -2.2 969,844 - +0.0 969,873 + +0.2 969,873 + -0.4 969,874 - -1.7 969,883 + +0.4 969,884 - +1.0 969,884 - -1.2 969,887 + +0.8 969,977 - +1.1 969,977 - -0.5 970,027 + -0.8 970,027 + +1.2 970,028 - +0.8 970,028 - +0.7 970,029 + -1.8 970,029 + +2.1 970,030 - -0.4 970,030 - -0.2 970,039 + +4.7 970,039 + -0.0 970,040 - -0.8 970,040 - -1.6 970,040 - +0.3 970,040 - -2.5 970,043 + +0.3 970,043 + -0.8 970,044 - +0.5 970,044 - -1.6 970,044 - -0.7 970,044 - -0.6 970,055 + -1.1 970,056 - +0.1 970,057 + -1.6 970,057 + -2.0 970,058 - -0.4 970,159 + -1.6 970,159 + +0.4 970,160 - -0.5 970,160 - -0.9 970,212 + -1.8 970,213 - -0.0 970,236 - -0.5 970,277 - -0.2 970,297 + -0.0 970,408 + HGI48_RS04630 0.16 -0.4 970,408 + HGI48_RS04630 0.16 -0.8 970,408 + HGI48_RS04630 0.16 -0.5 970,409 - HGI48_RS04630 0.16 +1.1 970,409 - HGI48_RS04630 0.16 -1.4 970,409 - HGI48_RS04630 0.16 -0.6 970,409 - HGI48_RS04630 0.16 -1.2 970,409 - HGI48_RS04630 0.16 -0.2 970,409 - HGI48_RS04630 0.16 +0.8 970,442 + HGI48_RS04630 0.18 -2.1 970,442 + HGI48_RS04630 0.18 +0.1 970,442 + HGI48_RS04630 0.18 -1.2 970,442 + HGI48_RS04630 0.18 -1.8
Or see this region's nucleotide sequence