Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS04150

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS04140 and HGI48_RS04145 are separated by 66 nucleotidesHGI48_RS04145 and HGI48_RS04150 are separated by 188 nucleotidesHGI48_RS04150 and HGI48_RS04155 are separated by 516 nucleotides HGI48_RS04140: HGI48_RS04140 - IS3 family transposase, at 875,660 to 876,811 _RS04140 HGI48_RS04145: HGI48_RS04145 - carboxymuconolactone decarboxylase family protein, at 876,878 to 877,060 _RS04145 HGI48_RS04150: HGI48_RS04150 - alkene reductase, at 877,249 to 878,361 _RS04150 HGI48_RS04155: HGI48_RS04155 - TetR family transcriptional regulator, at 878,878 to 879,441 _RS04155 Position (kb) 877 878 879Strain fitness (log2 ratio) -2 -1 0 1 2at 877.000 kb on + strand, within HGI48_RS04145at 877.074 kb on + strandat 877.116 kb on + strandat 877.144 kb on - strandat 877.375 kb on + strand, within HGI48_RS04150at 877.375 kb on + strand, within HGI48_RS04150at 877.376 kb on - strandat 877.376 kb on - strand, within HGI48_RS04150at 877.409 kb on - strandat 877.549 kb on - strand, within HGI48_RS04150at 877.600 kb on - strand, within HGI48_RS04150at 877.602 kb on - strandat 877.638 kb on + strand, within HGI48_RS04150at 877.639 kb on - strand, within HGI48_RS04150at 877.639 kb on - strand, within HGI48_RS04150at 877.754 kb on + strandat 877.755 kb on - strand, within HGI48_RS04150at 877.755 kb on - strandat 877.757 kb on - strand, within HGI48_RS04150at 877.757 kb on - strandat 877.758 kb on + strand, within HGI48_RS04150at 877.758 kb on + strand, within HGI48_RS04150at 877.759 kb on - strand, within HGI48_RS04150at 877.767 kb on + strand, within HGI48_RS04150at 877.767 kb on + strand, within HGI48_RS04150at 877.768 kb on - strandat 877.773 kb on + strand, within HGI48_RS04150at 877.805 kb on + strand, within HGI48_RS04150at 877.945 kb on + strand, within HGI48_RS04150at 877.946 kb on - strand, within HGI48_RS04150at 877.997 kb on - strand, within HGI48_RS04150at 878.004 kb on + strandat 878.004 kb on + strand, within HGI48_RS04150at 878.004 kb on + strand, within HGI48_RS04150at 878.037 kb on + strand, within HGI48_RS04150at 878.037 kb on + strand, within HGI48_RS04150at 878.037 kb on + strandat 878.037 kb on + strand, within HGI48_RS04150at 878.123 kb on + strand, within HGI48_RS04150at 878.123 kb on + strand, within HGI48_RS04150at 878.123 kb on + strand, within HGI48_RS04150at 878.124 kb on - strand, within HGI48_RS04150at 878.124 kb on - strand, within HGI48_RS04150at 878.124 kb on - strand, within HGI48_RS04150at 878.124 kb on - strand, within HGI48_RS04150at 878.139 kb on + strand, within HGI48_RS04150at 878.139 kb on + strand, within HGI48_RS04150at 878.140 kb on - strand, within HGI48_RS04150at 878.140 kb on - strand, within HGI48_RS04150at 878.141 kb on + strand, within HGI48_RS04150at 878.141 kb on + strand, within HGI48_RS04150at 878.142 kb on - strand, within HGI48_RS04150at 878.145 kb on + strand, within HGI48_RS04150at 878.146 kb on - strand, within HGI48_RS04150at 878.182 kb on - strand, within HGI48_RS04150at 878.182 kb on - strand, within HGI48_RS04150at 878.200 kb on + strand, within HGI48_RS04150at 878.201 kb on - strandat 878.234 kb on + strand, within HGI48_RS04150at 878.244 kb on + strand, within HGI48_RS04150at 878.244 kb on + strandat 878.340 kb on - strandat 878.365 kb on + strandat 878.376 kb on + strandat 878.382 kb on - strandat 878.382 kb on - strandat 878.447 kb on - strandat 878.471 kb on - strandat 878.581 kb on + strandat 878.585 kb on + strandat 878.585 kb on + strandat 878.638 kb on + strandat 878.691 kb on - strandat 878.691 kb on - strandat 878.700 kb on + strandat 878.701 kb on - strandat 878.706 kb on - strandat 878.706 kb on - strandat 878.706 kb on - strandat 878.739 kb on + strandat 878.739 kb on + strandat 878.825 kb on + strandat 878.825 kb on + strandat 878.852 kb on + strandat 878.906 kb on + strandat 878.941 kb on + strand, within HGI48_RS04155at 878.957 kb on - strand, within HGI48_RS04155at 879.115 kb on - strand, within HGI48_RS04155at 879.151 kb on - strand, within HGI48_RS04155at 879.163 kb on - strand, within HGI48_RS04155at 879.173 kb on + strand, within HGI48_RS04155at 879.174 kb on - strand, within HGI48_RS04155at 879.213 kb on + strand, within HGI48_RS04155

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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877,000 + HGI48_RS04145 0.67 +0.1
877,074 + -1.5
877,116 + -0.7
877,144 - -0.8
877,375 + HGI48_RS04150 0.11 -1.4
877,375 + HGI48_RS04150 0.11 -0.5
877,376 - +0.8
877,376 - HGI48_RS04150 0.11 -0.8
877,409 - +1.4
877,549 - HGI48_RS04150 0.27 +0.5
877,600 - HGI48_RS04150 0.32 -1.4
877,602 - -0.8
877,638 + HGI48_RS04150 0.35 -1.1
877,639 - HGI48_RS04150 0.35 +0.0
877,639 - HGI48_RS04150 0.35 -0.1
877,754 + +1.4
877,755 - HGI48_RS04150 0.45 -0.6
877,755 - -0.8
877,757 - HGI48_RS04150 0.46 +0.5
877,757 - -0.8
877,758 + HGI48_RS04150 0.46 -1.8
877,758 + HGI48_RS04150 0.46 +0.5
877,759 - HGI48_RS04150 0.46 -0.4
877,767 + HGI48_RS04150 0.47 +0.8
877,767 + HGI48_RS04150 0.47 -2.0
877,768 - +0.8
877,773 + HGI48_RS04150 0.47 +0.3
877,805 + HGI48_RS04150 0.50 -0.5
877,945 + HGI48_RS04150 0.63 +0.8
877,946 - HGI48_RS04150 0.63 +2.3
877,997 - HGI48_RS04150 0.67 -2.0
878,004 + +0.2
878,004 + HGI48_RS04150 0.68 +0.9
878,004 + HGI48_RS04150 0.68 +0.5
878,037 + HGI48_RS04150 0.71 +0.9
878,037 + HGI48_RS04150 0.71 -0.0
878,037 + +0.8
878,037 + HGI48_RS04150 0.71 -1.2
878,123 + HGI48_RS04150 0.79 +0.0
878,123 + HGI48_RS04150 0.79 +0.3
878,123 + HGI48_RS04150 0.79 -1.4
878,124 - HGI48_RS04150 0.79 -1.7
878,124 - HGI48_RS04150 0.79 -0.2
878,124 - HGI48_RS04150 0.79 -0.6
878,124 - HGI48_RS04150 0.79 -2.7
878,139 + HGI48_RS04150 0.80 -0.2
878,139 + HGI48_RS04150 0.80 +1.4
878,140 - HGI48_RS04150 0.80 -0.4
878,140 - HGI48_RS04150 0.80 -0.2
878,141 + HGI48_RS04150 0.80 -1.3
878,141 + HGI48_RS04150 0.80 -0.6
878,142 - HGI48_RS04150 0.80 +0.7
878,145 + HGI48_RS04150 0.81 -0.7
878,146 - HGI48_RS04150 0.81 -1.1
878,182 - HGI48_RS04150 0.84 +0.8
878,182 - HGI48_RS04150 0.84 -1.4
878,200 + HGI48_RS04150 0.85 -0.6
878,201 - -0.2
878,234 + HGI48_RS04150 0.88 -1.8
878,244 + HGI48_RS04150 0.89 +1.1
878,244 + +2.1
878,340 - -1.8
878,365 + +1.4
878,376 + -0.2
878,382 - -0.2
878,382 - -0.2
878,447 - +0.3
878,471 - -1.2
878,581 + +0.4
878,585 + -0.8
878,585 + -0.8
878,638 + +0.8
878,691 - -0.2
878,691 - -0.8
878,700 + -1.0
878,701 - -0.6
878,706 - +0.1
878,706 - -1.5
878,706 - -0.4
878,739 + -0.4
878,739 + -0.1
878,825 + +0.9
878,825 + -0.5
878,852 + +0.6
878,906 + +0.2
878,941 + HGI48_RS04155 0.11 -1.0
878,957 - HGI48_RS04155 0.14 -0.5
879,115 - HGI48_RS04155 0.42 -0.4
879,151 - HGI48_RS04155 0.48 -0.2
879,163 - HGI48_RS04155 0.51 +0.0
879,173 + HGI48_RS04155 0.52 +0.1
879,174 - HGI48_RS04155 0.52 +1.5
879,213 + HGI48_RS04155 0.59 -1.8

Or see this region's nucleotide sequence