Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03655

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS03650 and HGI48_RS03655 overlap by 4 nucleotidesHGI48_RS03655 and HGI48_RS03660 are separated by 219 nucleotides HGI48_RS03650: HGI48_RS03650 - HlyD family secretion protein, at 774,442 to 775,593 _RS03650 HGI48_RS03655: HGI48_RS03655 - MarR family transcriptional regulator, at 775,590 to 776,045 _RS03655 HGI48_RS03660: HGI48_RS03660 - GntR family transcriptional regulator, at 776,265 to 776,967 _RS03660 Position (kb) 775 776 777Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 774.690 kb on + strand, within HGI48_RS03650at 774.803 kb on + strand, within HGI48_RS03650at 774.803 kb on + strandat 775.125 kb on + strand, within HGI48_RS03650at 775.126 kb on - strand, within HGI48_RS03650at 775.253 kb on + strandat 775.253 kb on + strand, within HGI48_RS03650at 775.481 kb on + strandat 775.536 kb on + strandat 775.537 kb on - strandat 775.537 kb on - strandat 775.552 kb on + strandat 775.552 kb on + strandat 775.553 kb on - strandat 775.662 kb on - strand, within HGI48_RS03655at 775.694 kb on + strand, within HGI48_RS03655at 775.728 kb on + strand, within HGI48_RS03655at 775.729 kb on - strand, within HGI48_RS03655at 775.729 kb on - strand, within HGI48_RS03655at 776.062 kb on + strandat 776.063 kb on - strandat 776.099 kb on + strandat 776.128 kb on + strandat 776.151 kb on + strandat 776.151 kb on + strandat 776.152 kb on - strandat 776.152 kb on - strandat 776.168 kb on + strandat 776.169 kb on - strandat 776.208 kb on + strandat 776.208 kb on + strandat 776.209 kb on - strandat 776.209 kb on - strandat 776.209 kb on - strandat 776.212 kb on + strandat 776.212 kb on + strandat 776.212 kb on + strandat 776.212 kb on + strandat 776.213 kb on - strandat 776.213 kb on - strandat 776.213 kb on - strandat 776.213 kb on - strandat 776.213 kb on - strandat 776.294 kb on + strandat 776.294 kb on + strandat 776.464 kb on - strand, within HGI48_RS03660at 776.469 kb on + strand, within HGI48_RS03660at 776.469 kb on + strand, within HGI48_RS03660at 776.469 kb on + strand, within HGI48_RS03660at 776.469 kb on + strand, within HGI48_RS03660at 776.470 kb on - strand, within HGI48_RS03660at 776.470 kb on - strand, within HGI48_RS03660at 776.470 kb on - strand, within HGI48_RS03660at 776.470 kb on - strand, within HGI48_RS03660at 776.470 kb on - strand, within HGI48_RS03660at 776.557 kb on + strand, within HGI48_RS03660at 776.558 kb on - strand, within HGI48_RS03660at 776.697 kb on + strand, within HGI48_RS03660at 776.697 kb on + strand, within HGI48_RS03660at 776.697 kb on + strand, within HGI48_RS03660at 776.697 kb on + strand, within HGI48_RS03660at 776.697 kb on + strand, within HGI48_RS03660at 776.697 kb on + strand, within HGI48_RS03660at 776.698 kb on - strandat 776.698 kb on - strand, within HGI48_RS03660at 776.698 kb on - strand, within HGI48_RS03660at 776.698 kb on - strand, within HGI48_RS03660at 776.698 kb on - strandat 776.699 kb on + strand, within HGI48_RS03660at 776.699 kb on + strand, within HGI48_RS03660at 776.700 kb on - strand, within HGI48_RS03660at 776.700 kb on - strand, within HGI48_RS03660at 776.700 kb on - strand, within HGI48_RS03660at 776.703 kb on + strand, within HGI48_RS03660at 776.703 kb on + strand, within HGI48_RS03660at 776.704 kb on - strandat 776.704 kb on - strand, within HGI48_RS03660at 776.704 kb on - strandat 776.707 kb on + strand, within HGI48_RS03660at 776.748 kb on - strand, within HGI48_RS03660at 776.748 kb on - strand, within HGI48_RS03660at 776.748 kb on - strand, within HGI48_RS03660at 776.748 kb on - strand, within HGI48_RS03660at 776.748 kb on - strand, within HGI48_RS03660at 776.748 kb on - strand, within HGI48_RS03660at 776.771 kb on + strand, within HGI48_RS03660at 776.863 kb on + strand, within HGI48_RS03660at 776.887 kb on + strand, within HGI48_RS03660at 777.006 kb on + strandat 777.006 kb on + strandat 777.006 kb on + strandat 777.007 kb on - strandat 777.007 kb on - strandat 777.011 kb on + strandat 777.025 kb on + strandat 777.025 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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774,690 + HGI48_RS03650 0.22 -0.2
774,803 + HGI48_RS03650 0.31 +0.5
774,803 + +0.8
775,125 + HGI48_RS03650 0.59 -0.6
775,126 - HGI48_RS03650 0.59 +0.4
775,253 + +1.4
775,253 + HGI48_RS03650 0.70 -1.2
775,481 + +1.1
775,536 + +1.8
775,537 - +1.1
775,537 - +1.1
775,552 + -0.2
775,552 + -0.2
775,553 - +0.2
775,662 - HGI48_RS03655 0.16 -1.2
775,694 + HGI48_RS03655 0.23 -1.5
775,728 + HGI48_RS03655 0.30 -1.8
775,729 - HGI48_RS03655 0.30 -0.4
775,729 - HGI48_RS03655 0.30 -0.2
776,062 + -1.5
776,063 - -0.2
776,099 + +2.4
776,128 + -0.8
776,151 + -0.2
776,151 + +0.5
776,152 - -0.0
776,152 - +0.6
776,168 + +0.1
776,169 - +0.6
776,208 + +0.5
776,208 + -1.8
776,209 - +1.3
776,209 - -0.7
776,209 - +0.8
776,212 + -0.4
776,212 + -0.0
776,212 + -0.7
776,212 + +0.3
776,213 - -2.9
776,213 - -0.2
776,213 - -0.5
776,213 - -0.5
776,213 - +0.3
776,294 + -0.2
776,294 + -0.2
776,464 - HGI48_RS03660 0.28 +0.1
776,469 + HGI48_RS03660 0.29 -1.5
776,469 + HGI48_RS03660 0.29 -0.4
776,469 + HGI48_RS03660 0.29 +0.8
776,469 + HGI48_RS03660 0.29 +0.1
776,470 - HGI48_RS03660 0.29 -0.2
776,470 - HGI48_RS03660 0.29 +0.4
776,470 - HGI48_RS03660 0.29 -0.9
776,470 - HGI48_RS03660 0.29 +0.8
776,470 - HGI48_RS03660 0.29 -1.2
776,557 + HGI48_RS03660 0.42 -1.4
776,558 - HGI48_RS03660 0.42 -0.3
776,697 + HGI48_RS03660 0.61 -1.8
776,697 + HGI48_RS03660 0.61 +0.1
776,697 + HGI48_RS03660 0.61 -1.2
776,697 + HGI48_RS03660 0.61 -0.8
776,697 + HGI48_RS03660 0.61 -1.5
776,697 + HGI48_RS03660 0.61 -0.2
776,698 - +0.8
776,698 - HGI48_RS03660 0.62 -0.0
776,698 - HGI48_RS03660 0.62 -1.0
776,698 - HGI48_RS03660 0.62 -0.3
776,698 - +0.2
776,699 + HGI48_RS03660 0.62 +1.7
776,699 + HGI48_RS03660 0.62 -0.4
776,700 - HGI48_RS03660 0.62 +0.1
776,700 - HGI48_RS03660 0.62 +1.8
776,700 - HGI48_RS03660 0.62 +3.1
776,703 + HGI48_RS03660 0.62 -0.8
776,703 + HGI48_RS03660 0.62 -0.4
776,704 - +0.2
776,704 - HGI48_RS03660 0.62 +0.5
776,704 - +0.2
776,707 + HGI48_RS03660 0.63 -0.2
776,748 - HGI48_RS03660 0.69 +2.2
776,748 - HGI48_RS03660 0.69 +0.8
776,748 - HGI48_RS03660 0.69 -0.7
776,748 - HGI48_RS03660 0.69 +0.0
776,748 - HGI48_RS03660 0.69 +0.9
776,748 - HGI48_RS03660 0.69 -0.0
776,771 + HGI48_RS03660 0.72 -0.8
776,863 + HGI48_RS03660 0.85 -0.6
776,887 + HGI48_RS03660 0.88 +0.4
777,006 + -2.2
777,006 + -0.7
777,006 + +0.1
777,007 - +0.5
777,007 - +0.1
777,011 + -0.4
777,025 + +0.4
777,025 + -0.1

Or see this region's nucleotide sequence