Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS02300

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS02290 and HGI48_RS02295 are separated by 271 nucleotidesHGI48_RS02295 and HGI48_RS02300 are separated by 65 nucleotidesHGI48_RS02300 and HGI48_RS02305 are separated by 207 nucleotides HGI48_RS02290: HGI48_RS02290 - hypothetical protein, at 497,745 to 498,029 _RS02290 HGI48_RS02295: HGI48_RS02295 - DUF2778 domain-containing protein, at 498,301 to 498,819 _RS02295 HGI48_RS02300: HGI48_RS02300 - type VI secretion system tube protein Hcp, at 498,885 to 499,364 _RS02300 HGI48_RS02305: HGI48_RS02305 - ABC transporter ATP-binding protein, at 499,572 to 501,272 _RS02305 Position (kb) 498 499 500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 497.910 kb on + strandat 497.910 kb on + strand, within HGI48_RS02290at 497.947 kb on + strand, within HGI48_RS02290at 497.951 kb on + strandat 497.952 kb on - strand, within HGI48_RS02290at 497.952 kb on - strand, within HGI48_RS02290at 497.952 kb on - strand, within HGI48_RS02290at 497.952 kb on - strand, within HGI48_RS02290at 497.952 kb on - strandat 497.960 kb on - strand, within HGI48_RS02290at 497.994 kb on + strand, within HGI48_RS02290at 498.002 kb on + strandat 498.034 kb on + strandat 498.095 kb on + strandat 498.100 kb on - strandat 498.108 kb on + strandat 498.108 kb on + strandat 498.109 kb on - strandat 498.114 kb on + strandat 498.248 kb on + strandat 498.249 kb on - strandat 498.249 kb on - strandat 498.250 kb on + strandat 498.251 kb on - strandat 498.251 kb on - strandat 498.251 kb on - strandat 498.251 kb on - strandat 498.266 kb on - strandat 498.269 kb on - strandat 498.282 kb on + strandat 498.293 kb on + strandat 498.363 kb on + strand, within HGI48_RS02295at 498.364 kb on - strand, within HGI48_RS02295at 498.388 kb on + strand, within HGI48_RS02295at 498.423 kb on - strand, within HGI48_RS02295at 498.439 kb on - strand, within HGI48_RS02295at 498.452 kb on - strand, within HGI48_RS02295at 498.505 kb on + strand, within HGI48_RS02295at 498.513 kb on + strand, within HGI48_RS02295at 498.513 kb on + strand, within HGI48_RS02295at 498.513 kb on + strand, within HGI48_RS02295at 498.514 kb on - strand, within HGI48_RS02295at 498.514 kb on - strand, within HGI48_RS02295at 498.514 kb on - strand, within HGI48_RS02295at 498.514 kb on - strand, within HGI48_RS02295at 498.514 kb on - strand, within HGI48_RS02295at 498.514 kb on - strand, within HGI48_RS02295at 498.567 kb on + strand, within HGI48_RS02295at 498.568 kb on - strand, within HGI48_RS02295at 498.583 kb on + strand, within HGI48_RS02295at 498.588 kb on + strand, within HGI48_RS02295at 498.588 kb on + strand, within HGI48_RS02295at 498.589 kb on - strand, within HGI48_RS02295at 498.589 kb on - strand, within HGI48_RS02295at 498.615 kb on + strand, within HGI48_RS02295at 498.659 kb on + strand, within HGI48_RS02295at 498.699 kb on + strandat 498.699 kb on + strand, within HGI48_RS02295at 498.699 kb on + strandat 498.699 kb on + strand, within HGI48_RS02295at 498.700 kb on - strand, within HGI48_RS02295at 498.700 kb on - strand, within HGI48_RS02295at 498.700 kb on - strand, within HGI48_RS02295at 498.700 kb on - strand, within HGI48_RS02295at 498.760 kb on + strandat 498.760 kb on + strand, within HGI48_RS02295at 498.761 kb on - strand, within HGI48_RS02295at 498.763 kb on + strand, within HGI48_RS02295at 498.764 kb on - strand, within HGI48_RS02295at 498.779 kb on + strandat 498.780 kb on - strandat 498.811 kb on + strandat 498.812 kb on - strandat 498.820 kb on - strandat 498.820 kb on - strandat 498.840 kb on - strandat 498.865 kb on + strandat 498.870 kb on + strandat 498.870 kb on + strandat 498.870 kb on + strandat 498.871 kb on - strandat 498.871 kb on - strandat 498.871 kb on - strandat 498.913 kb on + strandat 498.920 kb on + strandat 498.920 kb on + strandat 498.920 kb on + strandat 498.921 kb on - strandat 498.969 kb on + strand, within HGI48_RS02300at 498.970 kb on - strand, within HGI48_RS02300at 499.021 kb on + strandat 499.021 kb on + strand, within HGI48_RS02300at 499.022 kb on - strand, within HGI48_RS02300at 499.029 kb on - strand, within HGI48_RS02300at 499.057 kb on - strand, within HGI48_RS02300at 499.190 kb on + strand, within HGI48_RS02300at 499.364 kb on + strandat 499.364 kb on + strandat 499.380 kb on + strandat 499.406 kb on + strandat 499.517 kb on + strandat 499.517 kb on + strandat 499.579 kb on + strandat 499.584 kb on - strandat 499.605 kb on + strandat 499.629 kb on + strandat 499.642 kb on + strandat 499.665 kb on + strandat 499.666 kb on - strandat 499.760 kb on + strand, within HGI48_RS02305at 499.761 kb on - strand, within HGI48_RS02305at 499.761 kb on - strand, within HGI48_RS02305at 499.904 kb on + strand, within HGI48_RS02305at 499.904 kb on + strand, within HGI48_RS02305at 499.904 kb on + strand, within HGI48_RS02305at 499.904 kb on + strand, within HGI48_RS02305at 499.904 kb on + strandat 499.904 kb on + strand, within HGI48_RS02305at 499.905 kb on - strand, within HGI48_RS02305at 499.991 kb on + strand, within HGI48_RS02305at 499.991 kb on + strand, within HGI48_RS02305at 499.992 kb on - strand, within HGI48_RS02305at 499.992 kb on - strand, within HGI48_RS02305at 499.992 kb on - strand, within HGI48_RS02305at 499.992 kb on - strand, within HGI48_RS02305at 500.043 kb on + strand, within HGI48_RS02305at 500.044 kb on - strand, within HGI48_RS02305at 500.044 kb on - strandat 500.208 kb on + strand, within HGI48_RS02305at 500.232 kb on - strand, within HGI48_RS02305at 500.352 kb on + strand, within HGI48_RS02305at 500.353 kb on - strand, within HGI48_RS02305

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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497,910 + +0.9
497,910 + HGI48_RS02290 0.58 +0.5
497,947 + HGI48_RS02290 0.71 +0.9
497,951 + +1.9
497,952 - HGI48_RS02290 0.73 -1.2
497,952 - HGI48_RS02290 0.73 -3.1
497,952 - HGI48_RS02290 0.73 -3.7
497,952 - HGI48_RS02290 0.73 +0.5
497,952 - -0.7
497,960 - HGI48_RS02290 0.75 -3.3
497,994 + HGI48_RS02290 0.87 -2.1
498,002 + -2.3
498,034 + -1.4
498,095 + -1.7
498,100 - -0.1
498,108 + -2.4
498,108 + +0.2
498,109 - -0.5
498,114 + +0.9
498,248 + +0.1
498,249 - +0.3
498,249 - +0.4
498,250 + -0.2
498,251 - +0.5
498,251 - -0.1
498,251 - -0.5
498,251 - +0.6
498,266 - +0.1
498,269 - +0.9
498,282 + +0.9
498,293 + -1.8
498,363 + HGI48_RS02295 0.12 -1.1
498,364 - HGI48_RS02295 0.12 +0.3
498,388 + HGI48_RS02295 0.17 +1.9
498,423 - HGI48_RS02295 0.24 -0.7
498,439 - HGI48_RS02295 0.27 -1.1
498,452 - HGI48_RS02295 0.29 -1.1
498,505 + HGI48_RS02295 0.39 +0.6
498,513 + HGI48_RS02295 0.41 +0.9
498,513 + HGI48_RS02295 0.41 -2.4
498,513 + HGI48_RS02295 0.41 +0.9
498,514 - HGI48_RS02295 0.41 +0.0
498,514 - HGI48_RS02295 0.41 -1.6
498,514 - HGI48_RS02295 0.41 +0.2
498,514 - HGI48_RS02295 0.41 -1.3
498,514 - HGI48_RS02295 0.41 +0.9
498,514 - HGI48_RS02295 0.41 +1.1
498,567 + HGI48_RS02295 0.51 -1.1
498,568 - HGI48_RS02295 0.51 -0.3
498,583 + HGI48_RS02295 0.54 -0.9
498,588 + HGI48_RS02295 0.55 -0.3
498,588 + HGI48_RS02295 0.55 -0.1
498,589 - HGI48_RS02295 0.55 +1.7
498,589 - HGI48_RS02295 0.55 +1.2
498,615 + HGI48_RS02295 0.61 +0.5
498,659 + HGI48_RS02295 0.69 -0.3
498,699 + -0.1
498,699 + HGI48_RS02295 0.77 -0.3
498,699 + +0.9
498,699 + HGI48_RS02295 0.77 +1.2
498,700 - HGI48_RS02295 0.77 +0.9
498,700 - HGI48_RS02295 0.77 -0.7
498,700 - HGI48_RS02295 0.77 -1.7
498,700 - HGI48_RS02295 0.77 -1.1
498,760 + +1.6
498,760 + HGI48_RS02295 0.88 +0.7
498,761 - HGI48_RS02295 0.89 +1.1
498,763 + HGI48_RS02295 0.89 +0.4
498,764 - HGI48_RS02295 0.89 -0.4
498,779 + -0.1
498,780 - -0.1
498,811 + +1.9
498,812 - -1.1
498,820 - -0.7
498,820 - +1.5
498,840 - -1.4
498,865 + +0.6
498,870 + -1.1
498,870 + -0.8
498,870 + -1.1
498,871 - -0.1
498,871 - -1.4
498,871 - -1.4
498,913 + -2.0
498,920 + -0.1
498,920 + -1.1
498,920 + -0.1
498,921 - +0.9
498,969 + HGI48_RS02300 0.17 -1.4
498,970 - HGI48_RS02300 0.18 -1.1
499,021 + -0.7
499,021 + HGI48_RS02300 0.28 -0.0
499,022 - HGI48_RS02300 0.29 -1.4
499,029 - HGI48_RS02300 0.30 -1.4
499,057 - HGI48_RS02300 0.36 -0.8
499,190 + HGI48_RS02300 0.64 -1.1
499,364 + -0.7
499,364 + -0.4
499,380 + +1.6
499,406 + -0.1
499,517 + +0.2
499,517 + +0.9
499,579 + +0.9
499,584 - +0.9
499,605 + -2.0
499,629 + +0.0
499,642 + -2.6
499,665 + -1.9
499,666 - -0.4
499,760 + HGI48_RS02305 0.11 -0.3
499,761 - HGI48_RS02305 0.11 +0.2
499,761 - HGI48_RS02305 0.11 +0.0
499,904 + HGI48_RS02305 0.20 -0.4
499,904 + HGI48_RS02305 0.20 +0.1
499,904 + HGI48_RS02305 0.20 -1.4
499,904 + HGI48_RS02305 0.20 +0.1
499,904 + +0.9
499,904 + HGI48_RS02305 0.20 -0.7
499,905 - HGI48_RS02305 0.20 -1.1
499,991 + HGI48_RS02305 0.25 -0.5
499,991 + HGI48_RS02305 0.25 -0.4
499,992 - HGI48_RS02305 0.25 -0.1
499,992 - HGI48_RS02305 0.25 -0.4
499,992 - HGI48_RS02305 0.25 +0.5
499,992 - HGI48_RS02305 0.25 +1.8
500,043 + HGI48_RS02305 0.28 +0.7
500,044 - HGI48_RS02305 0.28 -0.7
500,044 - +0.9
500,208 + HGI48_RS02305 0.37 -0.1
500,232 - HGI48_RS02305 0.39 -1.7
500,352 + HGI48_RS02305 0.46 -1.7
500,353 - HGI48_RS02305 0.46 -0.3

Or see this region's nucleotide sequence