Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01700 and HGI48_RS01705 are separated by 63 nucleotides HGI48_RS01705 and HGI48_RS01710 are separated by 177 nucleotides HGI48_RS01710 and HGI48_RS01715 are separated by 260 nucleotides
HGI48_RS01700: HGI48_RS01700 - AraC family transcriptional regulator, at 376,052 to 376,966
_RS01700
HGI48_RS01705: HGI48_RS01705 - DedA family protein, at 377,030 to 377,689
_RS01705
HGI48_RS01710: HGI48_RS01710 - cystathionine beta-lyase, at 377,867 to 379,060
_RS01710
HGI48_RS01715: HGI48_RS01715 - tol-pal system-associated acyl-CoA thioesterase, at 379,321 to 380,253
_RS01715
Position (kb) 377
378
379
380 Strain fitness (log2 ratio) -2
-1
0
1
2 at 377.147 kb on + strand, within HGI48_RS01705 at 377.245 kb on + strand, within HGI48_RS01705 at 377.245 kb on + strand, within HGI48_RS01705 at 377.245 kb on + strand, within HGI48_RS01705 at 377.245 kb on + strand, within HGI48_RS01705 at 377.245 kb on + strand, within HGI48_RS01705 at 377.245 kb on + strand, within HGI48_RS01705 at 377.246 kb on - strand, within HGI48_RS01705 at 377.361 kb on + strand, within HGI48_RS01705 at 377.426 kb on + strand, within HGI48_RS01705 at 377.426 kb on + strand, within HGI48_RS01705 at 377.427 kb on - strand, within HGI48_RS01705 at 377.427 kb on - strand, within HGI48_RS01705 at 377.430 kb on + strand, within HGI48_RS01705 at 377.430 kb on + strand, within HGI48_RS01705 at 377.430 kb on + strand, within HGI48_RS01705 at 377.430 kb on + strand, within HGI48_RS01705 at 377.605 kb on - strand, within HGI48_RS01705 at 377.605 kb on - strand, within HGI48_RS01705 at 377.668 kb on + strand at 377.730 kb on + strand at 377.765 kb on - strand at 377.784 kb on + strand at 377.784 kb on + strand at 377.784 kb on + strand at 377.784 kb on + strand at 377.784 kb on + strand at 377.785 kb on - strand at 377.785 kb on - strand at 377.785 kb on - strand at 377.785 kb on - strand at 377.799 kb on + strand at 377.800 kb on - strand at 377.803 kb on - strand at 377.803 kb on - strand at 377.803 kb on - strand at 377.803 kb on - strand at 377.803 kb on - strand at 377.811 kb on + strand at 377.812 kb on - strand at 377.812 kb on - strand at 377.812 kb on - strand at 377.812 kb on - strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.813 kb on + strand at 377.814 kb on - strand at 377.814 kb on - strand at 377.814 kb on - strand at 377.814 kb on - strand at 377.814 kb on - strand at 377.814 kb on - strand at 377.829 kb on + strand at 377.829 kb on + strand at 377.829 kb on + strand at 377.829 kb on + strand at 377.829 kb on + strand at 377.830 kb on - strand at 377.860 kb on - strand at 378.049 kb on - strand at 378.081 kb on + strand, within HGI48_RS01710 at 378.082 kb on - strand, within HGI48_RS01710 at 378.310 kb on + strand, within HGI48_RS01710 at 378.310 kb on + strand, within HGI48_RS01710 at 378.311 kb on - strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.312 kb on + strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand, within HGI48_RS01710 at 378.313 kb on - strand at 378.313 kb on - strand, within HGI48_RS01710 at 378.429 kb on + strand, within HGI48_RS01710 at 378.429 kb on + strand, within HGI48_RS01710 at 378.429 kb on + strand, within HGI48_RS01710 at 378.429 kb on + strand, within HGI48_RS01710 at 378.429 kb on + strand at 378.429 kb on + strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.430 kb on - strand, within HGI48_RS01710 at 378.455 kb on - strand, within HGI48_RS01710 at 378.455 kb on - strand, within HGI48_RS01710 at 378.455 kb on - strand, within HGI48_RS01710 at 378.957 kb on - strand at 379.051 kb on + strand at 379.052 kb on - strand at 379.060 kb on + strand at 379.074 kb on + strand at 379.075 kb on - strand at 379.075 kb on - strand at 379.097 kb on - strand at 379.104 kb on + strand at 379.105 kb on - strand at 379.144 kb on + strand at 379.144 kb on + strand at 379.144 kb on + strand at 379.144 kb on + strand at 379.147 kb on + strand at 379.147 kb on + strand at 379.148 kb on - strand at 379.148 kb on - strand at 379.156 kb on + strand at 379.156 kb on + strand at 379.156 kb on + strand at 379.156 kb on + strand at 379.156 kb on + strand at 379.156 kb on + strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.157 kb on - strand at 379.207 kb on - strand at 379.235 kb on - strand at 379.325 kb on - strand at 379.325 kb on - strand at 379.341 kb on + strand at 379.341 kb on + strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.342 kb on - strand at 379.344 kb on + strand at 379.345 kb on - strand at 379.372 kb on - strand at 379.564 kb on + strand at 379.564 kb on + strand at 379.564 kb on + strand, within HGI48_RS01715 at 379.564 kb on + strand, within HGI48_RS01715 at 379.564 kb on + strand, within HGI48_RS01715 at 379.564 kb on + strand, within HGI48_RS01715 at 379.565 kb on - strand, within HGI48_RS01715 at 379.565 kb on - strand, within HGI48_RS01715 at 379.565 kb on - strand, within HGI48_RS01715 at 379.565 kb on - strand at 379.647 kb on + strand, within HGI48_RS01715 at 379.648 kb on - strand at 379.693 kb on + strand, within HGI48_RS01715 at 379.693 kb on + strand, within HGI48_RS01715 at 379.694 kb on - strand, within HGI48_RS01715 at 379.848 kb on + strand, within HGI48_RS01715 at 379.848 kb on + strand, within HGI48_RS01715 at 379.848 kb on + strand, within HGI48_RS01715 at 379.848 kb on + strand at 379.849 kb on - strand at 379.849 kb on - strand, within HGI48_RS01715 at 379.849 kb on - strand, within HGI48_RS01715
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 377,147 + HGI48_RS01705 0.18 +0.2 377,245 + HGI48_RS01705 0.33 +0.9 377,245 + HGI48_RS01705 0.33 -1.1 377,245 + HGI48_RS01705 0.33 +0.6 377,245 + HGI48_RS01705 0.33 -1.6 377,245 + HGI48_RS01705 0.33 -0.3 377,245 + HGI48_RS01705 0.33 -0.1 377,246 - HGI48_RS01705 0.33 -0.6 377,361 + HGI48_RS01705 0.50 -1.1 377,426 + HGI48_RS01705 0.60 -0.1 377,426 + HGI48_RS01705 0.60 +1.7 377,427 - HGI48_RS01705 0.60 +1.7 377,427 - HGI48_RS01705 0.60 +0.4 377,430 + HGI48_RS01705 0.61 +0.2 377,430 + HGI48_RS01705 0.61 +0.4 377,430 + HGI48_RS01705 0.61 +0.5 377,430 + HGI48_RS01705 0.61 +0.4 377,605 - HGI48_RS01705 0.87 +0.4 377,605 - HGI48_RS01705 0.87 +1.6 377,668 + -2.1 377,730 + -0.8 377,765 - -1.6 377,784 + +0.4 377,784 + +1.7 377,784 + +0.7 377,784 + -0.5 377,784 + -0.3 377,785 - -0.4 377,785 - +0.7 377,785 - -0.2 377,785 - +0.5 377,799 + -1.4 377,800 - +0.2 377,803 - -0.6 377,803 - -0.9 377,803 - -1.8 377,803 - -1.2 377,803 - -1.4 377,811 + -2.0 377,812 - -1.6 377,812 - +0.2 377,812 - +0.6 377,812 - +0.7 377,813 + +0.6 377,813 + +0.1 377,813 + +0.8 377,813 + +2.6 377,813 + +0.1 377,813 + +0.4 377,813 + +0.5 377,813 + +0.9 377,814 - +0.3 377,814 - -1.4 377,814 - +0.4 377,814 - -1.4 377,814 - -0.2 377,814 - -0.5 377,829 + -0.1 377,829 + +0.9 377,829 + +0.8 377,829 + +2.4 377,829 + -0.3 377,830 - +0.5 377,860 - -0.6 378,049 - +0.9 378,081 + HGI48_RS01710 0.18 -1.4 378,082 - HGI48_RS01710 0.18 -1.4 378,310 + HGI48_RS01710 0.37 -0.1 378,310 + HGI48_RS01710 0.37 -1.9 378,311 - HGI48_RS01710 0.37 -2.6 378,312 + HGI48_RS01710 0.37 -0.4 378,312 + HGI48_RS01710 0.37 -0.1 378,312 + HGI48_RS01710 0.37 -1.0 378,312 + HGI48_RS01710 0.37 -0.9 378,312 + HGI48_RS01710 0.37 -1.8 378,312 + HGI48_RS01710 0.37 +0.2 378,312 + HGI48_RS01710 0.37 -0.6 378,312 + HGI48_RS01710 0.37 +0.4 378,313 - HGI48_RS01710 0.37 +0.3 378,313 - HGI48_RS01710 0.37 -0.5 378,313 - HGI48_RS01710 0.37 +0.9 378,313 - HGI48_RS01710 0.37 -0.4 378,313 - HGI48_RS01710 0.37 -1.4 378,313 - HGI48_RS01710 0.37 -1.6 378,313 - HGI48_RS01710 0.37 -0.9 378,313 - HGI48_RS01710 0.37 -1.2 378,313 - -0.1 378,313 - HGI48_RS01710 0.37 +0.2 378,429 + HGI48_RS01710 0.47 -0.3 378,429 + HGI48_RS01710 0.47 -0.1 378,429 + HGI48_RS01710 0.47 -1.9 378,429 + HGI48_RS01710 0.47 -0.6 378,429 + +0.4 378,429 + HGI48_RS01710 0.47 -1.4 378,430 - HGI48_RS01710 0.47 -0.4 378,430 - HGI48_RS01710 0.47 -1.8 378,430 - HGI48_RS01710 0.47 -1.7 378,430 - HGI48_RS01710 0.47 -1.4 378,430 - HGI48_RS01710 0.47 -1.9 378,430 - HGI48_RS01710 0.47 -0.8 378,430 - HGI48_RS01710 0.47 -1.2 378,455 - HGI48_RS01710 0.49 -1.1 378,455 - HGI48_RS01710 0.49 +0.1 378,455 - HGI48_RS01710 0.49 +0.4 378,957 - -1.1 379,051 + -1.4 379,052 - +0.7 379,060 + -0.6 379,074 + -1.3 379,075 - -2.1 379,075 - -0.1 379,097 - -1.6 379,104 + +0.5 379,105 - -0.6 379,144 + -1.3 379,144 + -0.3 379,144 + -0.1 379,144 + -1.6 379,147 + +0.7 379,147 + -1.4 379,148 - +1.4 379,148 - -1.4 379,156 + +0.9 379,156 + +0.4 379,156 + -1.5 379,156 + -0.1 379,156 + -2.1 379,156 + +0.9 379,157 - -1.3 379,157 - +0.0 379,157 - -1.1 379,157 - +0.5 379,157 - +1.4 379,157 - -0.1 379,157 - +0.9 379,157 - -1.4 379,207 - +0.5 379,235 - +0.7 379,325 - -1.5 379,325 - -1.4 379,341 + -0.7 379,341 + -0.7 379,342 - -0.4 379,342 - -0.6 379,342 - +0.9 379,342 - -0.4 379,344 + -0.1 379,345 - -1.6 379,372 - +0.4 379,564 + +0.9 379,564 + +0.9 379,564 + HGI48_RS01715 0.26 +0.6 379,564 + HGI48_RS01715 0.26 -0.5 379,564 + HGI48_RS01715 0.26 +0.0 379,564 + HGI48_RS01715 0.26 -1.9 379,565 - HGI48_RS01715 0.26 -1.4 379,565 - HGI48_RS01715 0.26 -1.4 379,565 - HGI48_RS01715 0.26 -0.6 379,565 - +2.3 379,647 + HGI48_RS01715 0.35 +0.3 379,648 - +1.9 379,693 + HGI48_RS01715 0.40 -1.4 379,693 + HGI48_RS01715 0.40 -2.1 379,694 - HGI48_RS01715 0.40 -1.0 379,848 + HGI48_RS01715 0.56 -1.1 379,848 + HGI48_RS01715 0.56 +0.1 379,848 + HGI48_RS01715 0.56 +0.3 379,848 + -0.6 379,849 - -0.6 379,849 - HGI48_RS01715 0.57 -1.2 379,849 - HGI48_RS01715 0.57 +1.1
Or see this region's nucleotide sequence