Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00620 and HGI48_RS00625 are separated by 53 nucleotides HGI48_RS00625 and HGI48_RS00630 are separated by 32 nucleotides HGI48_RS00630 and HGI48_RS00635 are separated by 11 nucleotides HGI48_RS00635 and HGI48_RS00640 are separated by 8 nucleotides
HGI48_RS00620: HGI48_RS00620 - isoaspartyl peptidase/L-asparaginase, at 147,358 to 148,326
_RS00620
HGI48_RS00625: HGI48_RS00625 - M55 family metallopeptidase, at 148,380 to 149,201
_RS00625
HGI48_RS00630: HGI48_RS00630 - P1 family peptidase, at 149,234 to 150,289
_RS00630
HGI48_RS00635: HGI48_RS00635 - ABC transporter permease subunit, at 150,301 to 151,200
_RS00635
HGI48_RS00640: HGI48_RS00640 - ABC transporter permease subunit, at 151,209 to 152,129
_RS00640
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2 at 148.360 kb on + strand at 148.381 kb on + strand at 148.381 kb on + strand at 148.382 kb on - strand at 148.382 kb on - strand at 148.382 kb on - strand at 148.403 kb on - strand at 148.454 kb on - strand at 148.547 kb on - strand, within HGI48_RS00625 at 148.547 kb on - strand, within HGI48_RS00625 at 148.577 kb on + strand, within HGI48_RS00625 at 148.578 kb on - strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.687 kb on + strand, within HGI48_RS00625 at 148.688 kb on - strand, within HGI48_RS00625 at 148.688 kb on - strand, within HGI48_RS00625 at 148.688 kb on - strand at 148.705 kb on + strand, within HGI48_RS00625 at 148.706 kb on - strand, within HGI48_RS00625 at 148.743 kb on + strand, within HGI48_RS00625 at 148.787 kb on - strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.790 kb on + strand, within HGI48_RS00625 at 148.791 kb on - strand, within HGI48_RS00625 at 148.791 kb on - strand, within HGI48_RS00625 at 149.113 kb on - strand, within HGI48_RS00625 at 149.120 kb on - strand at 149.120 kb on - strand at 149.190 kb on - strand at 149.193 kb on + strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.194 kb on - strand at 149.460 kb on + strand, within HGI48_RS00630 at 149.461 kb on - strand, within HGI48_RS00630 at 149.921 kb on - strand at 149.951 kb on - strand, within HGI48_RS00630 at 150.052 kb on + strand, within HGI48_RS00630 at 150.085 kb on + strand, within HGI48_RS00630 at 150.086 kb on - strand, within HGI48_RS00630 at 150.086 kb on - strand, within HGI48_RS00630 at 150.086 kb on - strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.151 kb on + strand, within HGI48_RS00630 at 150.302 kb on + strand at 150.447 kb on + strand, within HGI48_RS00635 at 150.448 kb on - strand, within HGI48_RS00635 at 150.448 kb on - strand, within HGI48_RS00635 at 150.517 kb on - strand, within HGI48_RS00635 at 150.517 kb on - strand at 150.542 kb on + strand, within HGI48_RS00635 at 150.542 kb on + strand, within HGI48_RS00635 at 150.542 kb on + strand, within HGI48_RS00635 at 150.543 kb on - strand, within HGI48_RS00635 at 150.576 kb on + strand, within HGI48_RS00635 at 150.576 kb on + strand, within HGI48_RS00635 at 150.576 kb on + strand, within HGI48_RS00635 at 150.577 kb on - strand, within HGI48_RS00635 at 150.577 kb on - strand, within HGI48_RS00635 at 150.577 kb on - strand, within HGI48_RS00635 at 150.632 kb on + strand, within HGI48_RS00635 at 150.633 kb on - strand at 150.787 kb on + strand, within HGI48_RS00635 at 150.787 kb on + strand, within HGI48_RS00635 at 150.787 kb on + strand, within HGI48_RS00635 at 150.787 kb on + strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.788 kb on - strand, within HGI48_RS00635 at 150.831 kb on - strand, within HGI48_RS00635 at 150.831 kb on - strand, within HGI48_RS00635 at 150.834 kb on - strand, within HGI48_RS00635 at 150.871 kb on - strand, within HGI48_RS00635 at 150.899 kb on + strand, within HGI48_RS00635 at 150.900 kb on - strand, within HGI48_RS00635 at 150.900 kb on - strand, within HGI48_RS00635 at 150.920 kb on + strand, within HGI48_RS00635 at 150.920 kb on + strand, within HGI48_RS00635 at 150.921 kb on - strand, within HGI48_RS00635 at 150.924 kb on + strand, within HGI48_RS00635 at 150.925 kb on - strand, within HGI48_RS00635 at 150.925 kb on - strand, within HGI48_RS00635 at 151.111 kb on - strand at 151.210 kb on + strand at 151.215 kb on + strand at 151.215 kb on + strand at 151.266 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 148,360 + +0.6 148,381 + -1.3 148,381 + -1.0 148,382 - -1.0 148,382 - -0.4 148,382 - +0.0 148,403 - +2.0 148,454 - +0.4 148,547 - HGI48_RS00625 0.20 -0.6 148,547 - HGI48_RS00625 0.20 -1.3 148,577 + HGI48_RS00625 0.24 -1.0 148,578 - HGI48_RS00625 0.24 +1.0 148,687 + HGI48_RS00625 0.37 -0.8 148,687 + HGI48_RS00625 0.37 +0.6 148,687 + HGI48_RS00625 0.37 -2.1 148,687 + HGI48_RS00625 0.37 -1.4 148,687 + HGI48_RS00625 0.37 +0.7 148,688 - HGI48_RS00625 0.37 +0.5 148,688 - HGI48_RS00625 0.37 -1.2 148,688 - -0.6 148,705 + HGI48_RS00625 0.40 -0.4 148,706 - HGI48_RS00625 0.40 -2.4 148,743 + HGI48_RS00625 0.44 -1.6 148,787 - HGI48_RS00625 0.50 +1.6 148,790 + HGI48_RS00625 0.50 -0.6 148,790 + HGI48_RS00625 0.50 +0.0 148,790 + HGI48_RS00625 0.50 -1.1 148,791 - HGI48_RS00625 0.50 +0.2 148,791 - HGI48_RS00625 0.50 -1.2 149,113 - HGI48_RS00625 0.89 +1.0 149,120 - +1.4 149,120 - +0.8 149,190 - +0.6 149,193 + -1.8 149,194 - +1.0 149,194 - -1.6 149,194 - +0.0 149,194 - +0.7 149,194 - -0.1 149,194 - -0.2 149,460 + HGI48_RS00630 0.21 +0.1 149,461 - HGI48_RS00630 0.21 -1.0 149,921 - +1.0 149,951 - HGI48_RS00630 0.68 +0.8 150,052 + HGI48_RS00630 0.77 -1.3 150,085 + HGI48_RS00630 0.81 -0.2 150,086 - HGI48_RS00630 0.81 +0.8 150,086 - HGI48_RS00630 0.81 -1.3 150,086 - HGI48_RS00630 0.81 +0.1 150,151 + HGI48_RS00630 0.87 +1.2 150,151 + HGI48_RS00630 0.87 +0.7 150,151 + HGI48_RS00630 0.87 -2.4 150,151 + HGI48_RS00630 0.87 -0.4 150,151 + HGI48_RS00630 0.87 +0.0 150,302 + -0.9 150,447 + HGI48_RS00635 0.16 -0.5 150,448 - HGI48_RS00635 0.16 +1.0 150,448 - HGI48_RS00635 0.16 -1.3 150,517 - HGI48_RS00635 0.24 +1.6 150,517 - +2.0 150,542 + HGI48_RS00635 0.27 +0.1 150,542 + HGI48_RS00635 0.27 -0.3 150,542 + HGI48_RS00635 0.27 -0.9 150,543 - HGI48_RS00635 0.27 +0.6 150,576 + HGI48_RS00635 0.31 -0.3 150,576 + HGI48_RS00635 0.31 -0.6 150,576 + HGI48_RS00635 0.31 -0.3 150,577 - HGI48_RS00635 0.31 -1.5 150,577 - HGI48_RS00635 0.31 -1.3 150,577 - HGI48_RS00635 0.31 +0.2 150,632 + HGI48_RS00635 0.37 -0.6 150,633 - -0.6 150,787 + HGI48_RS00635 0.54 -0.1 150,787 + HGI48_RS00635 0.54 +1.2 150,787 + HGI48_RS00635 0.54 -0.6 150,787 + HGI48_RS00635 0.54 -1.0 150,788 - HGI48_RS00635 0.54 -0.3 150,788 - HGI48_RS00635 0.54 +2.2 150,788 - HGI48_RS00635 0.54 -0.7 150,788 - HGI48_RS00635 0.54 -0.7 150,788 - HGI48_RS00635 0.54 -2.0 150,831 - HGI48_RS00635 0.59 -1.7 150,831 - HGI48_RS00635 0.59 +0.8 150,834 - HGI48_RS00635 0.59 -1.4 150,871 - HGI48_RS00635 0.63 -0.6 150,899 + HGI48_RS00635 0.66 -0.1 150,900 - HGI48_RS00635 0.67 -0.9 150,900 - HGI48_RS00635 0.67 -1.0 150,920 + HGI48_RS00635 0.69 -0.1 150,920 + HGI48_RS00635 0.69 -0.4 150,921 - HGI48_RS00635 0.69 -1.1 150,924 + HGI48_RS00635 0.69 +0.7 150,925 - HGI48_RS00635 0.69 +0.0 150,925 - HGI48_RS00635 0.69 -2.0 151,111 - +0.2 151,210 + +1.6 151,215 + -0.3 151,215 + -1.6 151,266 - +0.8
Or see this region's nucleotide sequence