Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS00525 and HGI48_RS00530 are separated by 135 nucleotides HGI48_RS00530 and HGI48_RS00535 are separated by 55 nucleotides HGI48_RS00535 and HGI48_RS00540 are separated by 167 nucleotides HGI48_RS00540 and HGI48_RS00545 are separated by 129 nucleotides
HGI48_RS00525: HGI48_RS00525 - DUF1471 domain-containing protein, at 128,227 to 128,475
_RS00525
HGI48_RS00530: HGI48_RS00530 - hypothetical protein, at 128,611 to 128,829
_RS00530
HGI48_RS00535: HGI48_RS00535 - helix-turn-helix transcriptional regulator, at 128,885 to 129,238
_RS00535
HGI48_RS00540: HGI48_RS00540 - YicC family protein, at 129,406 to 130,269
_RS00540
HGI48_RS00545: HGI48_RS00545 - LysR family transcriptional regulator, at 130,399 to 131,307
_RS00545
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.420 kb on + strand, within HGI48_RS00525 at 128.421 kb on - strand, within HGI48_RS00525 at 128.467 kb on + strand at 128.467 kb on + strand at 128.468 kb on - strand at 128.468 kb on - strand at 128.469 kb on + strand at 128.473 kb on + strand at 128.473 kb on + strand at 128.473 kb on + strand at 128.474 kb on - strand at 128.474 kb on - strand at 128.474 kb on - strand at 128.474 kb on - strand at 128.474 kb on - strand at 128.474 kb on - strand at 128.474 kb on - strand at 128.545 kb on + strand at 128.550 kb on + strand at 128.551 kb on - strand at 128.551 kb on - strand at 128.551 kb on - strand at 128.551 kb on - strand at 128.551 kb on - strand at 128.586 kb on + strand at 128.609 kb on + strand at 128.610 kb on - strand at 128.612 kb on + strand at 128.612 kb on + strand at 128.626 kb on + strand at 128.627 kb on - strand at 128.636 kb on + strand, within HGI48_RS00530 at 128.636 kb on + strand, within HGI48_RS00530 at 128.637 kb on - strand, within HGI48_RS00530 at 128.640 kb on + strand, within HGI48_RS00530 at 128.641 kb on - strand, within HGI48_RS00530 at 128.641 kb on - strand, within HGI48_RS00530 at 128.641 kb on - strand, within HGI48_RS00530 at 128.735 kb on + strand, within HGI48_RS00530 at 128.736 kb on - strand, within HGI48_RS00530 at 128.736 kb on - strand, within HGI48_RS00530 at 128.764 kb on + strand, within HGI48_RS00530 at 128.791 kb on + strand at 128.792 kb on - strand, within HGI48_RS00530 at 128.812 kb on + strand at 128.812 kb on + strand at 128.812 kb on + strand at 128.812 kb on + strand at 128.812 kb on + strand at 128.813 kb on - strand at 128.813 kb on - strand at 128.813 kb on - strand at 128.819 kb on + strand at 128.819 kb on + strand at 128.819 kb on + strand at 128.820 kb on - strand at 128.846 kb on + strand at 128.868 kb on - strand at 128.868 kb on - strand at 128.868 kb on - strand at 128.868 kb on - strand at 128.876 kb on + strand at 128.876 kb on + strand at 128.876 kb on + strand at 128.876 kb on + strand at 128.876 kb on + strand at 128.877 kb on - strand at 128.937 kb on - strand, within HGI48_RS00535 at 129.018 kb on + strand, within HGI48_RS00535 at 129.018 kb on + strand at 129.018 kb on + strand, within HGI48_RS00535 at 129.019 kb on - strand, within HGI48_RS00535 at 129.019 kb on - strand, within HGI48_RS00535 at 129.115 kb on + strand, within HGI48_RS00535 at 129.116 kb on - strand, within HGI48_RS00535 at 129.193 kb on + strand at 129.193 kb on + strand, within HGI48_RS00535 at 129.193 kb on + strand, within HGI48_RS00535 at 129.193 kb on + strand, within HGI48_RS00535 at 129.194 kb on - strand, within HGI48_RS00535 at 129.220 kb on - strand at 129.220 kb on - strand at 129.243 kb on - strand at 129.274 kb on - strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.276 kb on + strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.277 kb on - strand at 129.287 kb on + strand at 129.287 kb on + strand at 129.287 kb on + strand at 129.291 kb on + strand at 129.311 kb on - strand at 129.341 kb on + strand at 129.342 kb on - strand at 129.343 kb on + strand at 129.344 kb on - strand at 129.344 kb on - strand at 129.344 kb on - strand at 129.346 kb on + strand at 129.346 kb on + strand at 129.347 kb on - strand at 129.347 kb on - strand at 129.347 kb on - strand at 129.384 kb on - strand at 129.407 kb on + strand at 129.408 kb on - strand at 129.585 kb on - strand, within HGI48_RS00540 at 129.846 kb on + strand at 129.846 kb on + strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 129.847 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.167 kb on - strand, within HGI48_RS00540 at 130.260 kb on + strand at 130.261 kb on - strand at 130.261 kb on - strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.277 kb on + strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.278 kb on - strand at 130.299 kb on + strand at 130.299 kb on + strand at 130.300 kb on - strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.303 kb on + strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.304 kb on - strand at 130.305 kb on + strand at 130.510 kb on + strand at 130.510 kb on + strand, within HGI48_RS00545 at 130.571 kb on + strand, within HGI48_RS00545 at 130.643 kb on + strand, within HGI48_RS00545 at 130.644 kb on - strand, within HGI48_RS00545 at 130.644 kb on - strand, within HGI48_RS00545 at 130.644 kb on - strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.655 kb on + strand, within HGI48_RS00545 at 130.656 kb on - strand, within HGI48_RS00545 at 130.656 kb on - strand, within HGI48_RS00545 at 130.656 kb on - strand, within HGI48_RS00545 at 130.816 kb on - strand, within HGI48_RS00545 at 130.816 kb on - strand, within HGI48_RS00545 at 130.816 kb on - strand at 130.903 kb on - strand, within HGI48_RS00545 at 130.903 kb on - strand, within HGI48_RS00545 at 131.076 kb on + strand, within HGI48_RS00545 at 131.076 kb on + strand, within HGI48_RS00545 at 131.077 kb on - strand, within HGI48_RS00545 at 131.077 kb on - strand at 131.083 kb on + strand, within HGI48_RS00545 at 131.083 kb on + strand, within HGI48_RS00545 at 131.083 kb on + strand, within HGI48_RS00545 at 131.083 kb on + strand, within HGI48_RS00545 at 131.084 kb on - strand, within HGI48_RS00545 at 131.084 kb on - strand at 131.084 kb on - strand, within HGI48_RS00545 at 131.084 kb on - strand, within HGI48_RS00545 at 131.094 kb on - strand, within HGI48_RS00545 at 131.233 kb on + strand at 131.234 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 128,420 + HGI48_RS00525 0.78 +0.3 128,421 - HGI48_RS00525 0.78 -1.6 128,467 + +0.2 128,467 + -1.3 128,468 - +0.6 128,468 - +0.0 128,469 + +0.5 128,473 + -0.6 128,473 + -0.3 128,473 + +0.4 128,474 - +0.4 128,474 - -0.6 128,474 - +0.0 128,474 - +0.3 128,474 - +0.2 128,474 - -1.0 128,474 - +1.3 128,545 + +2.3 128,550 + +0.6 128,551 - +0.5 128,551 - +1.4 128,551 - -0.3 128,551 - +0.5 128,551 - +0.4 128,586 + +0.0 128,609 + +0.2 128,610 - -1.0 128,612 + -0.6 128,612 + -1.4 128,626 + -0.8 128,627 - +0.2 128,636 + HGI48_RS00530 0.11 -0.1 128,636 + HGI48_RS00530 0.11 -1.4 128,637 - HGI48_RS00530 0.12 -0.3 128,640 + HGI48_RS00530 0.13 -0.5 128,641 - HGI48_RS00530 0.14 +1.3 128,641 - HGI48_RS00530 0.14 -0.6 128,641 - HGI48_RS00530 0.14 -0.4 128,735 + HGI48_RS00530 0.57 -0.6 128,736 - HGI48_RS00530 0.57 -1.3 128,736 - HGI48_RS00530 0.57 +0.3 128,764 + HGI48_RS00530 0.70 +0.6 128,791 + +1.0 128,792 - HGI48_RS00530 0.83 +0.6 128,812 + +0.6 128,812 + -1.3 128,812 + +0.4 128,812 + -1.8 128,812 + -0.4 128,813 - +0.3 128,813 - -0.2 128,813 - -0.9 128,819 + -0.1 128,819 + -0.3 128,819 + +0.3 128,820 - +1.0 128,846 + -0.6 128,868 - +1.6 128,868 - -1.2 128,868 - -0.7 128,868 - +0.2 128,876 + -1.2 128,876 + -1.0 128,876 + +0.3 128,876 + -0.6 128,876 + -0.2 128,877 - +0.3 128,937 - HGI48_RS00535 0.15 +1.0 129,018 + HGI48_RS00535 0.38 +0.9 129,018 + +1.0 129,018 + HGI48_RS00535 0.38 -0.5 129,019 - HGI48_RS00535 0.38 +0.7 129,019 - HGI48_RS00535 0.38 -0.8 129,115 + HGI48_RS00535 0.65 +0.9 129,116 - HGI48_RS00535 0.65 -0.4 129,193 + +1.0 129,193 + HGI48_RS00535 0.87 +1.3 129,193 + HGI48_RS00535 0.87 -1.0 129,193 + HGI48_RS00535 0.87 +0.7 129,194 - HGI48_RS00535 0.87 +1.2 129,220 - -0.4 129,220 - -1.3 129,243 - +0.7 129,274 - +0.7 129,276 + +0.0 129,276 + +0.4 129,276 + +0.3 129,276 + -0.4 129,277 - +0.2 129,277 - -1.4 129,277 - -1.8 129,287 + -0.9 129,287 + -0.3 129,287 + +1.0 129,291 + +1.0 129,311 - +2.0 129,341 + +0.7 129,342 - +0.0 129,343 + -0.6 129,344 - +0.5 129,344 - +0.7 129,344 - +0.4 129,346 + +0.7 129,346 + -1.3 129,347 - -1.6 129,347 - +1.9 129,347 - +1.4 129,384 - +0.3 129,407 + +0.6 129,408 - +0.7 129,585 - HGI48_RS00540 0.21 -0.6 129,846 + +0.4 129,846 + HGI48_RS00540 0.51 -0.3 129,847 - HGI48_RS00540 0.51 -0.7 129,847 - HGI48_RS00540 0.51 +1.5 129,847 - HGI48_RS00540 0.51 +1.0 129,847 - HGI48_RS00540 0.51 -0.3 129,847 - HGI48_RS00540 0.51 -1.6 129,847 - HGI48_RS00540 0.51 +2.0 129,847 - HGI48_RS00540 0.51 -1.6 130,167 - HGI48_RS00540 0.88 -1.3 130,167 - HGI48_RS00540 0.88 +1.2 130,167 - HGI48_RS00540 0.88 +0.7 130,167 - HGI48_RS00540 0.88 +0.7 130,260 + -0.4 130,261 - -0.6 130,261 - +0.6 130,277 + -2.0 130,277 + -1.0 130,277 + -1.8 130,277 + -2.3 130,277 + +0.6 130,278 - -0.3 130,278 - +2.5 130,278 - +1.0 130,278 - +0.6 130,278 - -1.3 130,278 - +0.2 130,299 + -1.0 130,299 + +0.6 130,300 - +1.3 130,303 + +1.0 130,303 + +1.0 130,303 + +0.4 130,303 + +0.7 130,303 + +0.0 130,303 + +0.5 130,304 - +0.7 130,304 - +0.3 130,304 - +0.2 130,304 - -1.0 130,304 - -1.6 130,304 - +0.5 130,304 - +0.4 130,305 + +0.2 130,510 + +1.7 130,510 + HGI48_RS00545 0.12 -0.1 130,571 + HGI48_RS00545 0.19 +0.0 130,643 + HGI48_RS00545 0.27 +0.2 130,644 - HGI48_RS00545 0.27 -0.6 130,644 - HGI48_RS00545 0.27 -2.0 130,644 - HGI48_RS00545 0.27 -0.3 130,655 + HGI48_RS00545 0.28 -0.1 130,655 + HGI48_RS00545 0.28 -0.3 130,655 + +0.0 130,655 + HGI48_RS00545 0.28 -0.7 130,655 + HGI48_RS00545 0.28 -2.0 130,655 + HGI48_RS00545 0.28 +0.7 130,656 - HGI48_RS00545 0.28 +0.7 130,656 - HGI48_RS00545 0.28 -0.8 130,656 - HGI48_RS00545 0.28 -0.8 130,816 - HGI48_RS00545 0.46 -0.6 130,816 - HGI48_RS00545 0.46 -0.3 130,816 - +0.0 130,903 - HGI48_RS00545 0.55 +1.2 130,903 - HGI48_RS00545 0.55 -1.1 131,076 + HGI48_RS00545 0.74 -0.6 131,076 + HGI48_RS00545 0.74 +1.6 131,077 - HGI48_RS00545 0.75 -0.5 131,077 - -0.6 131,083 + HGI48_RS00545 0.75 +0.2 131,083 + HGI48_RS00545 0.75 -1.8 131,083 + HGI48_RS00545 0.75 -0.6 131,083 + HGI48_RS00545 0.75 -1.3 131,084 - HGI48_RS00545 0.75 -1.6 131,084 - -0.6 131,084 - HGI48_RS00545 0.75 -0.4 131,084 - HGI48_RS00545 0.75 -1.2 131,094 - HGI48_RS00545 0.76 -0.5 131,233 + +0.0 131,234 - -0.1
Or see this region's nucleotide sequence