Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00190

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00185 and HGI48_RS00190 overlap by 4 nucleotidesHGI48_RS00190 and HGI48_RS00195 are separated by 57 nucleotidesHGI48_RS00195 and HGI48_RS00200 overlap by 4 nucleotides HGI48_RS00185: HGI48_RS00185 - AAA family ATPase, at 47,763 to 49,421 _RS00185 HGI48_RS00190: HGI48_RS00190 - TIGR02646 family protein, at 49,418 to 50,065 _RS00190 HGI48_RS00195: HGI48_RS00195 - N-acetyltransferase, at 50,123 to 50,578 _RS00195 HGI48_RS00200: HGI48_RS00200 - DNA-3-methyladenine glycosylase I, at 50,575 to 51,135 _RS00200 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 48.447 kb on + strandat 48.448 kb on - strand, within HGI48_RS00185at 48.460 kb on + strand, within HGI48_RS00185at 48.532 kb on + strand, within HGI48_RS00185at 48.532 kb on + strand, within HGI48_RS00185at 48.533 kb on - strand, within HGI48_RS00185at 48.548 kb on + strand, within HGI48_RS00185at 48.729 kb on - strand, within HGI48_RS00185at 48.797 kb on + strand, within HGI48_RS00185at 48.817 kb on + strand, within HGI48_RS00185at 48.896 kb on - strand, within HGI48_RS00185at 48.896 kb on - strand, within HGI48_RS00185at 48.935 kb on + strand, within HGI48_RS00185at 48.936 kb on - strand, within HGI48_RS00185at 48.937 kb on + strand, within HGI48_RS00185at 48.938 kb on - strand, within HGI48_RS00185at 48.938 kb on - strand, within HGI48_RS00185at 49.038 kb on - strand, within HGI48_RS00185at 49.038 kb on - strand, within HGI48_RS00185at 49.082 kb on - strand, within HGI48_RS00185at 49.117 kb on + strand, within HGI48_RS00185at 49.117 kb on + strand, within HGI48_RS00185at 49.118 kb on - strand, within HGI48_RS00185at 49.154 kb on - strand, within HGI48_RS00185at 49.154 kb on - strand, within HGI48_RS00185at 49.247 kb on - strand, within HGI48_RS00185at 49.432 kb on + strandat 49.432 kb on + strandat 49.464 kb on + strandat 49.465 kb on - strandat 49.499 kb on - strand, within HGI48_RS00190at 49.528 kb on + strand, within HGI48_RS00190at 49.528 kb on + strandat 49.550 kb on + strand, within HGI48_RS00190at 49.617 kb on + strand, within HGI48_RS00190at 49.657 kb on + strand, within HGI48_RS00190at 49.695 kb on - strand, within HGI48_RS00190at 49.702 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.720 kb on + strand, within HGI48_RS00190at 49.721 kb on - strand, within HGI48_RS00190at 49.721 kb on - strand, within HGI48_RS00190at 49.721 kb on - strandat 49.830 kb on + strand, within HGI48_RS00190at 49.830 kb on + strand, within HGI48_RS00190at 49.830 kb on + strand, within HGI48_RS00190at 49.831 kb on - strand, within HGI48_RS00190at 49.831 kb on - strand, within HGI48_RS00190at 49.831 kb on - strand, within HGI48_RS00190at 49.846 kb on + strand, within HGI48_RS00190at 49.863 kb on + strand, within HGI48_RS00190at 49.888 kb on + strand, within HGI48_RS00190at 49.888 kb on + strand, within HGI48_RS00190at 49.889 kb on - strand, within HGI48_RS00190at 49.907 kb on - strand, within HGI48_RS00190at 49.937 kb on + strand, within HGI48_RS00190at 49.937 kb on + strand, within HGI48_RS00190at 49.956 kb on + strand, within HGI48_RS00190at 49.957 kb on - strand, within HGI48_RS00190at 49.957 kb on - strand, within HGI48_RS00190at 49.960 kb on - strand, within HGI48_RS00190at 50.004 kb on + strandat 50.004 kb on + strandat 50.004 kb on + strandat 50.004 kb on + strandat 50.004 kb on + strandat 50.005 kb on - strandat 50.005 kb on - strandat 50.005 kb on - strandat 50.006 kb on + strandat 50.006 kb on + strandat 50.006 kb on + strandat 50.007 kb on - strandat 50.007 kb on - strandat 50.007 kb on - strandat 50.024 kb on - strandat 50.049 kb on - strandat 50.049 kb on - strandat 50.049 kb on - strandat 50.050 kb on + strandat 50.060 kb on + strandat 50.061 kb on - strandat 50.061 kb on - strandat 50.061 kb on - strandat 50.064 kb on - strandat 50.118 kb on + strandat 50.119 kb on - strandat 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.170 kb on + strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strand, within HGI48_RS00195at 50.171 kb on - strandat 50.174 kb on + strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.175 kb on - strand, within HGI48_RS00195at 50.199 kb on + strand, within HGI48_RS00195at 50.218 kb on + strand, within HGI48_RS00195at 50.219 kb on - strand, within HGI48_RS00195at 50.219 kb on - strand, within HGI48_RS00195at 50.266 kb on - strand, within HGI48_RS00195at 50.302 kb on + strand, within HGI48_RS00195at 50.302 kb on + strand, within HGI48_RS00195at 50.302 kb on + strand, within HGI48_RS00195at 50.303 kb on - strand, within HGI48_RS00195at 50.337 kb on + strand, within HGI48_RS00195at 50.338 kb on - strand, within HGI48_RS00195at 50.393 kb on - strand, within HGI48_RS00195at 50.421 kb on + strand, within HGI48_RS00195at 50.448 kb on + strand, within HGI48_RS00195at 50.448 kb on + strand, within HGI48_RS00195at 50.448 kb on + strandat 50.449 kb on - strand, within HGI48_RS00195at 50.449 kb on - strand, within HGI48_RS00195at 50.498 kb on - strand, within HGI48_RS00195at 50.531 kb on + strand, within HGI48_RS00195at 50.532 kb on - strand, within HGI48_RS00195at 50.640 kb on + strand, within HGI48_RS00200at 50.641 kb on - strand, within HGI48_RS00200at 50.790 kb on + strand, within HGI48_RS00200at 50.790 kb on + strand, within HGI48_RS00200at 50.790 kb on + strand, within HGI48_RS00200at 50.853 kb on + strand, within HGI48_RS00200at 50.854 kb on - strand, within HGI48_RS00200at 50.908 kb on + strandat 50.970 kb on - strand, within HGI48_RS00200

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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48,447 + -0.6
48,448 - HGI48_RS00185 0.41 +0.0
48,460 + HGI48_RS00185 0.42 -0.1
48,532 + HGI48_RS00185 0.46 -0.1
48,532 + HGI48_RS00185 0.46 +0.9
48,533 - HGI48_RS00185 0.46 +1.5
48,548 + HGI48_RS00185 0.47 -1.2
48,729 - HGI48_RS00185 0.58 -0.2
48,797 + HGI48_RS00185 0.62 -1.2
48,817 + HGI48_RS00185 0.64 +0.4
48,896 - HGI48_RS00185 0.68 -1.6
48,896 - HGI48_RS00185 0.68 -1.6
48,935 + HGI48_RS00185 0.71 +0.1
48,936 - HGI48_RS00185 0.71 -0.3
48,937 + HGI48_RS00185 0.71 +0.3
48,938 - HGI48_RS00185 0.71 +1.8
48,938 - HGI48_RS00185 0.71 +0.8
49,038 - HGI48_RS00185 0.77 +1.3
49,038 - HGI48_RS00185 0.77 -0.9
49,082 - HGI48_RS00185 0.80 +2.5
49,117 + HGI48_RS00185 0.82 +0.4
49,117 + HGI48_RS00185 0.82 +1.0
49,118 - HGI48_RS00185 0.82 -0.9
49,154 - HGI48_RS00185 0.84 -0.2
49,154 - HGI48_RS00185 0.84 -2.2
49,247 - HGI48_RS00185 0.89 +1.1
49,432 + -0.2
49,432 + +3.5
49,464 + -0.4
49,465 - +0.4
49,499 - HGI48_RS00190 0.12 -1.3
49,528 + HGI48_RS00190 0.17 +0.2
49,528 + +0.4
49,550 + HGI48_RS00190 0.20 +0.6
49,617 + HGI48_RS00190 0.31 +0.2
49,657 + HGI48_RS00190 0.37 +0.0
49,695 - HGI48_RS00190 0.43 -1.2
49,702 + HGI48_RS00190 0.44 -1.4
49,720 + HGI48_RS00190 0.47 -1.0
49,720 + HGI48_RS00190 0.47 +0.1
49,720 + HGI48_RS00190 0.47 +1.5
49,720 + HGI48_RS00190 0.47 +0.4
49,720 + HGI48_RS00190 0.47 -1.7
49,721 - HGI48_RS00190 0.47 +1.1
49,721 - HGI48_RS00190 0.47 +0.0
49,721 - +1.0
49,830 + HGI48_RS00190 0.64 -2.2
49,830 + HGI48_RS00190 0.64 -2.2
49,830 + HGI48_RS00190 0.64 +2.6
49,831 - HGI48_RS00190 0.64 -0.6
49,831 - HGI48_RS00190 0.64 -1.6
49,831 - HGI48_RS00190 0.64 -1.5
49,846 + HGI48_RS00190 0.66 +0.0
49,863 + HGI48_RS00190 0.69 +0.0
49,888 + HGI48_RS00190 0.73 +0.3
49,888 + HGI48_RS00190 0.73 +1.5
49,889 - HGI48_RS00190 0.73 -1.8
49,907 - HGI48_RS00190 0.75 +0.6
49,937 + HGI48_RS00190 0.80 +0.6
49,937 + HGI48_RS00190 0.80 +1.3
49,956 + HGI48_RS00190 0.83 -1.3
49,957 - HGI48_RS00190 0.83 +0.6
49,957 - HGI48_RS00190 0.83 -0.6
49,960 - HGI48_RS00190 0.84 +0.0
50,004 + -0.6
50,004 + +0.4
50,004 + +0.3
50,004 + -1.6
50,004 + -2.0
50,005 - -1.7
50,005 - +0.4
50,005 - -0.6
50,006 + -1.3
50,006 + +0.0
50,006 + -1.4
50,007 - -2.0
50,007 - +1.3
50,007 - +0.6
50,024 - -0.2
50,049 - -0.6
50,049 - +0.5
50,049 - -0.7
50,050 + -0.3
50,060 + -0.8
50,061 - +0.0
50,061 - -1.6
50,061 - +0.1
50,064 - +1.0
50,118 + +0.4
50,119 - +1.0
50,170 + HGI48_RS00195 0.10 -0.1
50,170 + HGI48_RS00195 0.10 -0.1
50,170 + HGI48_RS00195 0.10 -1.9
50,170 + HGI48_RS00195 0.10 -0.1
50,170 + HGI48_RS00195 0.10 -0.1
50,171 - HGI48_RS00195 0.11 -2.3
50,171 - HGI48_RS00195 0.11 +0.0
50,171 - HGI48_RS00195 0.11 -0.6
50,171 - HGI48_RS00195 0.11 -0.9
50,171 - HGI48_RS00195 0.11 -1.0
50,171 - +1.0
50,174 + HGI48_RS00195 0.11 -1.1
50,175 - HGI48_RS00195 0.11 -1.3
50,175 - HGI48_RS00195 0.11 -0.8
50,175 - HGI48_RS00195 0.11 +0.6
50,175 - HGI48_RS00195 0.11 -0.5
50,199 + HGI48_RS00195 0.17 -1.1
50,218 + HGI48_RS00195 0.21 -0.4
50,219 - HGI48_RS00195 0.21 +0.6
50,219 - HGI48_RS00195 0.21 -2.8
50,266 - HGI48_RS00195 0.31 -0.4
50,302 + HGI48_RS00195 0.39 +1.0
50,302 + HGI48_RS00195 0.39 -2.2
50,302 + HGI48_RS00195 0.39 +0.6
50,303 - HGI48_RS00195 0.39 +1.1
50,337 + HGI48_RS00195 0.47 -0.8
50,338 - HGI48_RS00195 0.47 +0.6
50,393 - HGI48_RS00195 0.59 +0.0
50,421 + HGI48_RS00195 0.65 +0.0
50,448 + HGI48_RS00195 0.71 -1.4
50,448 + HGI48_RS00195 0.71 -1.0
50,448 + +2.0
50,449 - HGI48_RS00195 0.71 -1.6
50,449 - HGI48_RS00195 0.71 -0.7
50,498 - HGI48_RS00195 0.82 -0.7
50,531 + HGI48_RS00195 0.89 -0.1
50,532 - HGI48_RS00195 0.90 +1.3
50,640 + HGI48_RS00200 0.12 -0.8
50,641 - HGI48_RS00200 0.12 -0.9
50,790 + HGI48_RS00200 0.38 -2.2
50,790 + HGI48_RS00200 0.38 -0.2
50,790 + HGI48_RS00200 0.38 +0.6
50,853 + HGI48_RS00200 0.50 +0.3
50,854 - HGI48_RS00200 0.50 -2.3
50,908 + +2.0
50,970 - HGI48_RS00200 0.70 -2.0

Or see this region's nucleotide sequence