Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21560

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,810,312	+		HGI48_RS21550	0.80	+1.1
4,810,337	-		HGI48_RS21550	0.82	-0.6
4,810,337	-		HGI48_RS21550	0.82	+0.6
4,810,338	+		HGI48_RS21550	0.82	-0.9
4,810,339	-		HGI48_RS21550	0.82	+0.0
4,810,374	+		HGI48_RS21550	0.85	-0.3
4,810,374	+		HGI48_RS21550	0.85	-1.2
4,810,374	+		HGI48_RS21550	0.85	-0.4
4,810,374	+		HGI48_RS21550	0.85	+0.2
4,810,374	+		HGI48_RS21550	0.85	+0.5
4,810,374	+		HGI48_RS21550	0.85	+0.7
4,810,374	+		HGI48_RS21550	0.85	-0.5
4,810,374	+		HGI48_RS21550	0.85	-0.4
4,810,375	-		HGI48_RS21550	0.85	+0.7
4,810,375	-		HGI48_RS21550	0.85	+1.5
4,810,375	-		HGI48_RS21550	0.85	-1.4
4,810,375	-		HGI48_RS21550	0.85	-2.2
4,810,466	+				+1.1
4,810,467	-				+0.6
4,810,508	+				+0.8
4,810,511	+				+1.1
4,810,511	+				-1.9
4,810,511	+				+1.6
4,810,512	-				+0.3
4,810,512	-				-0.4
4,810,512	-				-1.3
4,810,512	-				+0.1
4,810,523	-				-1.0
4,810,523	-				-1.0
4,810,529	+				+0.4
4,810,529	+				+1.5
4,810,535	+				+0.4
4,810,535	+				-0.1
4,810,535	+				-1.4
4,810,536	-				+0.7
4,810,536	-				-0.1
4,810,547	+				-0.2
4,810,547	+				+0.1
4,810,548	-				+1.6
4,810,551	+				+0.7
4,810,552	-				-1.7
4,810,574	+				-0.4
4,810,592	-				-0.9
4,810,606	+				+2.5
4,810,606	+				+1.1
4,810,677	+		HGI48_RS21555	0.25	-0.4
4,810,677	+		HGI48_RS21555	0.25	+1.1
4,810,678	-		HGI48_RS21555	0.26	-0.7
4,810,678	-		HGI48_RS21555	0.26	+0.1
4,810,721	+		HGI48_RS21555	0.36	-2.0
4,810,721	+		HGI48_RS21555	0.36	-0.9
4,810,722	-		HGI48_RS21555	0.36	-2.0
4,810,722	-		HGI48_RS21555	0.36	-0.3
4,810,722	-		HGI48_RS21555	0.36	+0.9
4,810,722	-		HGI48_RS21555	0.36	+2.3
4,810,728	+		HGI48_RS21555	0.38	+0.2
4,810,728	+		HGI48_RS21555	0.38	+0.4
4,810,729	-		HGI48_RS21555	0.38	-0.4
4,810,759	-				+1.6
4,810,759	-		HGI48_RS21555	0.45	+1.1
4,810,768	-		HGI48_RS21555	0.47	-0.4
4,810,781	-		HGI48_RS21555	0.50	-0.9
4,810,781	-		HGI48_RS21555	0.50	+0.1
4,810,786	+		HGI48_RS21555	0.52	-1.0
4,810,786	+		HGI48_RS21555	0.52	-0.2
4,810,786	+				+0.6
4,810,786	+		HGI48_RS21555	0.52	+0.6
4,810,787	-				+1.6
4,810,787	-		HGI48_RS21555	0.52	+2.0
4,810,789	+		HGI48_RS21555	0.52	+0.5
4,810,789	+		HGI48_RS21555	0.52	-0.2
4,810,789	+		HGI48_RS21555	0.52	+0.4
4,810,789	+		HGI48_RS21555	0.52	+0.5
4,810,789	+		HGI48_RS21555	0.52	+0.2
4,810,789	+		HGI48_RS21555	0.52	+1.0
4,810,789	+				+1.1
4,810,790	-		HGI48_RS21555	0.53	+0.3
4,810,790	-		HGI48_RS21555	0.53	-1.6
4,810,790	-		HGI48_RS21555	0.53	-0.7
4,810,790	-		HGI48_RS21555	0.53	+0.5
4,810,790	-		HGI48_RS21555	0.53	-0.2
4,810,832	-		HGI48_RS21555	0.63	-1.4
4,810,832	-				+1.1
4,810,843	+		HGI48_RS21555	0.65	-1.1
4,810,853	+		HGI48_RS21555	0.68	-2.2
4,810,894	-		HGI48_RS21555	0.77	+0.4
4,810,894	-		HGI48_RS21555	0.77	+0.4
4,811,022	+				-1.7
4,811,022	+				+0.6
4,811,023	-				-0.2
4,811,023	-				+0.1
4,811,023	-				-1.7
4,811,037	+				-0.4
4,811,037	+				+0.6
4,811,037	+				-0.0
4,811,037	+				+0.1
4,811,037	+				-2.0
4,811,037	+				-0.9
4,811,037	+				+0.6
4,811,037	+				+0.7
4,811,038	-				+0.7
4,811,038	-				-1.6
4,811,038	-				+1.4
4,811,038	-				-1.4
4,811,044	+				+0.1
4,811,044	+				+0.0
4,811,044	+				-0.9
4,811,044	+				-1.1
4,811,044	+				+1.9
4,811,044	+				-1.4
4,811,044	+				-0.7
4,811,045	-				+0.5
4,811,045	-				+0.3
4,811,045	-				+0.7
4,811,045	-				-0.5
4,811,045	-				-0.4
4,811,045	-				+0.1
4,811,078	+				-0.7
4,811,078	+				+0.3
4,811,084	+				-1.2
4,811,085	-				+0.1
4,811,085	-				-0.6
4,811,098	+				-0.9
4,811,118	-				+0.7
4,811,144	+				+0.1
4,811,170	+				+0.1
4,811,170	+				+0.9
4,811,170	+				+0.5
4,811,170	+				-0.7
4,811,170	+				+0.0
4,811,179	+				+0.7
4,811,179	+				-0.3
4,811,180	-				-0.6
4,811,183	+				+0.6
4,811,183	+				+1.1
4,811,183	+				+0.1
4,811,183	+				+1.5
4,811,183	+				-0.0
4,811,184	-				-0.2
4,811,184	-				+1.5
4,811,184	-				+0.1
4,811,184	-				-0.9
4,811,184	-				-1.2
4,811,187	-				+0.3
4,811,187	-				-2.4
4,811,193	+				-1.3
4,811,193	+				+0.1
4,811,212	+				-0.8
4,811,212	+				-1.0
4,811,232	+				+0.9
4,811,232	+				+2.1
4,811,233	-				+0.3
4,811,233	-				+1.1
4,811,233	-				+0.1
4,811,250	+				+2.9
4,811,250	+				-0.1
4,811,250	+				+0.0
4,811,250	+				+1.1
4,811,250	+				-0.4
4,811,250	+				-1.4
4,811,250	+				+0.7
4,811,251	-				+1.7
4,811,251	-				+0.8
4,811,251	-				-0.7
4,811,251	-				-0.4
4,811,270	+				+1.7
4,811,270	+				-1.7
4,811,270	+				+0.4
4,811,270	+				+1.5
4,811,270	+				-0.3
4,811,270	+				-1.2
4,811,270	+				-0.0
4,811,271	-				-1.2
4,811,271	-				+1.1
4,811,271	-				-0.4
4,811,271	-				+0.9
4,811,271	-				+1.1
4,811,271	-				+1.3
4,811,274	+				+0.4
4,811,275	-				+0.2
4,811,275	-				-0.3
4,811,275	-				-0.2
4,811,292	-				+1.4
4,811,300	+				+1.1
4,811,300	+				+1.1
4,811,300	+				+0.1
4,811,300	+				+0.5
4,811,307	-				-0.9
4,811,412	+		HGI48_RS21560	0.12	+0.9
4,811,433	+		HGI48_RS21560	0.14	+0.5
4,811,433	+		HGI48_RS21560	0.14	-0.9
4,811,459	+		HGI48_RS21560	0.16	+0.3
4,811,460	-		HGI48_RS21560	0.16	-0.3
4,811,460	-				+1.1
4,811,460	-		HGI48_RS21560	0.16	-0.4
4,811,460	-		HGI48_RS21560	0.16	+0.7
4,811,463	+		HGI48_RS21560	0.16	-0.4
4,811,463	+		HGI48_RS21560	0.16	-2.0
4,811,463	+				+1.6
4,811,463	+		HGI48_RS21560	0.16	-0.1
4,811,464	-		HGI48_RS21560	0.17	+0.5
4,811,464	-		HGI48_RS21560	0.17	-0.1
4,811,464	-		HGI48_RS21560	0.17	+0.5
4,811,606	-		HGI48_RS21560	0.30	+0.1
4,811,676	+		HGI48_RS21560	0.37	-0.9
4,811,676	+		HGI48_RS21560	0.37	-0.9
4,811,676	+		HGI48_RS21560	0.37	-0.0
4,811,676	+		HGI48_RS21560	0.37	-0.3
4,811,676	+		HGI48_RS21560	0.37	-0.4
4,811,676	+		HGI48_RS21560	0.37	-0.1
4,811,676	+		HGI48_RS21560	0.37	-0.1
4,811,676	+		HGI48_RS21560	0.37	-1.2
4,811,676	+		HGI48_RS21560	0.37	-0.9
4,811,676	+		HGI48_RS21560	0.37	-0.4
4,811,677	-		HGI48_RS21560	0.37	-1.0
4,811,677	-		HGI48_RS21560	0.37	+0.0
4,811,677	-				+1.1
4,811,677	-		HGI48_RS21560	0.37	-2.4
4,811,677	-		HGI48_RS21560	0.37	-2.1
4,811,677	-		HGI48_RS21560	0.37	-1.7
4,811,677	-				-0.4
4,811,677	-		HGI48_RS21560	0.37	+0.7
4,811,677	-		HGI48_RS21560	0.37	-1.9
4,811,677	-		HGI48_RS21560	0.37	+1.5
4,811,677	-		HGI48_RS21560	0.37	+0.7
4,811,677	-		HGI48_RS21560	0.37	+1.1
4,811,677	-		HGI48_RS21560	0.37	-1.9
4,811,677	-		HGI48_RS21560	0.37	-0.7
4,811,764	+		HGI48_RS21560	0.45	+0.1
4,811,765	-		HGI48_RS21560	0.45	+0.1
4,811,765	-		HGI48_RS21560	0.45	-0.5
4,811,765	-		HGI48_RS21560	0.45	-1.2
4,811,765	-		HGI48_RS21560	0.45	+1.0
4,811,793	+				+1.1
4,811,793	+		HGI48_RS21560	0.48	-0.0
4,811,793	+		HGI48_RS21560	0.48	+0.5
4,811,794	-		HGI48_RS21560	0.48	-0.1
4,811,794	-		HGI48_RS21560	0.48	-0.3
4,811,794	-		HGI48_RS21560	0.48	+1.1
4,811,794	-		HGI48_RS21560	0.48	+0.1
4,811,794	-		HGI48_RS21560	0.48	-1.2
4,811,794	-		HGI48_RS21560	0.48	-0.9
4,811,794	-		HGI48_RS21560	0.48	+0.4
4,811,794	-		HGI48_RS21560	0.48	-1.9
4,811,808	+		HGI48_RS21560	0.50	-0.0
4,811,808	+		HGI48_RS21560	0.50	+0.8
4,811,808	+		HGI48_RS21560	0.50	-1.4
4,811,808	+		HGI48_RS21560	0.50	-1.4
4,811,809	-		HGI48_RS21560	0.50	+1.1
4,811,809	-		HGI48_RS21560	0.50	+1.1
4,811,809	-		HGI48_RS21560	0.50	-0.9
4,811,817	-		HGI48_RS21560	0.50	-0.4
4,811,863	+		HGI48_RS21560	0.55	-0.2
4,811,863	+		HGI48_RS21560	0.55	-0.0
4,811,863	+		HGI48_RS21560	0.55	+2.0
4,811,864	-		HGI48_RS21560	0.55	-0.3
4,811,944	-		HGI48_RS21560	0.63	+0.5
4,811,953	-		HGI48_RS21560	0.63	+0.4
4,811,953	-		HGI48_RS21560	0.63	-0.6
4,811,972	+		HGI48_RS21560	0.65	+0.7
4,811,972	+		HGI48_RS21560	0.65	-1.7
4,811,973	-		HGI48_RS21560	0.65	+1.1
4,811,973	-		HGI48_RS21560	0.65	+0.5
4,811,983	-		HGI48_RS21560	0.66	+0.7
4,812,009	-				-0.4
4,812,112	+				+0.6
4,812,128	+				+0.1
4,812,128	+		HGI48_RS21560	0.80	+0.0
4,812,129	-				+0.1
4,812,208	-		HGI48_RS21560	0.88	-0.9
4,812,213	-		HGI48_RS21560	0.88	-2.0
4,812,243	+				+0.3
4,812,243	+				+2.2
4,812,327	+				-0.6
4,812,328	-				-0.9
4,812,347	-				-0.9
4,812,347	-				-0.2
4,812,347	-				-0.7
4,812,352	+				+0.8
4,812,352	+				-0.0
4,812,352	+				-1.6
4,812,352	+				-1.2
4,812,357	+				+0.4
4,812,357	+				+0.6
4,812,357	+				-0.1
4,812,357	+				+0.4
4,812,357	+				+0.6
4,812,358	-				-0.9
4,812,358	-				-0.3
4,812,358	-				-0.2
4,812,358	-				-0.1
4,812,358	-				-0.3
4,812,463	+				+0.1
4,812,464	-				+0.0
4,812,464	-				-2.4
4,812,464	-				+0.6
4,812,480	+				+1.7
4,812,481	-				+0.7
4,812,481	-				-1.0
4,812,481	-				+0.1
4,812,481	-				-0.9
4,812,500	+				+0.1
4,812,500	+				+0.4
4,812,500	+				+0.8
4,812,500	+				+1.7
4,812,501	-				-1.9
4,812,501	-				-0.5
4,812,501	-				-1.2
4,812,501	-				-0.7
4,812,501	-				-1.4
4,812,501	-				+2.1
4,812,524	+				+0.1
4,812,524	+				-1.0
4,812,524	+				-1.2
4,812,524	+				-0.8
4,812,525	-				-0.4
4,812,525	-				+0.1
4,812,525	-				+0.6
4,812,647	+		HGI48_RS21565	0.15	-0.9
4,812,726	+		HGI48_RS21565	0.23	-0.0
4,812,879	+		HGI48_RS21565	0.39	-1.9
4,812,924	+		HGI48_RS21565	0.44	+0.4
4,812,925	-		HGI48_RS21565	0.44	-1.2
4,812,925	-		HGI48_RS21565	0.44	+0.2
4,813,042	+		HGI48_RS21565	0.56	-0.2
4,813,050	+		HGI48_RS21565	0.57	-1.3
4,813,050	+		HGI48_RS21565	0.57	+0.1
4,813,051	-		HGI48_RS21565	0.57	+1.1
4,813,051	-		HGI48_RS21565	0.57	-1.4
4,813,051	-		HGI48_RS21565	0.57	-0.9
4,813,051	-		HGI48_RS21565	0.57	-0.4
4,813,051	-				+1.1
4,813,051	-				+0.1
4,813,051	-		HGI48_RS21565	0.57	-0.2
4,813,114	-		HGI48_RS21565	0.64	+0.1
4,813,130	+		HGI48_RS21565	0.66	-1.4
4,813,142	+		HGI48_RS21565	0.67	-1.0
4,813,180	+		HGI48_RS21565	0.71	+0.1
4,813,180	+		HGI48_RS21565	0.71	-0.9
4,813,257	+		HGI48_RS21565	0.79	-1.7
4,813,257	+		HGI48_RS21565	0.79	-1.4
4,813,257	+				+2.1
4,813,258	-		HGI48_RS21565	0.79	-1.2
4,813,258	-		HGI48_RS21565	0.79	+0.6
4,813,281	+				-0.4
4,813,281	+		HGI48_RS21565	0.81	-1.4
4,813,281	+				+1.1
4,813,281	+		HGI48_RS21565	0.81	-0.9
4,813,282	-		HGI48_RS21565	0.81	+0.6
4,813,282	-		HGI48_RS21565	0.81	-1.2
4,813,282	-		HGI48_RS21565	0.81	-0.5
4,813,282	-		HGI48_RS21565	0.81	-1.2
4,813,282	-		HGI48_RS21565	0.81	-0.2
4,813,283	+		HGI48_RS21565	0.81	-0.9