Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21435

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,783,258	+		HGI48_RS21430	0.77	-0.2
4,783,258	+		HGI48_RS21430	0.77	-1.2
4,783,277	+		HGI48_RS21430	0.81	-1.2
4,783,277	+		HGI48_RS21430	0.81	-1.2
4,783,277	+		HGI48_RS21430	0.81	+0.7
4,783,278	-		HGI48_RS21430	0.81	+0.7
4,783,278	-		HGI48_RS21430	0.81	-1.0
4,783,352	+				-1.9
4,783,352	+				-0.4
4,783,352	+				+2.1
4,783,352	+				+0.1
4,783,353	-				-0.5
4,783,367	+				+0.4
4,783,367	+				-2.6
4,783,368	-				-0.8
4,783,368	-				+0.8
4,783,385	+				-0.4
4,783,385	+				-0.7
4,783,386	-				-0.9
4,783,386	-				-0.4
4,783,386	-				+0.8
4,783,386	-				-1.2
4,783,492	+				-1.7
4,783,492	+				+0.1
4,783,493	-				+1.3
4,783,493	-				+0.7
4,783,536	-				-1.2
4,783,536	-				+0.8
4,783,582	+				+0.1
4,783,583	-				-0.9
4,783,642	+				+0.3
4,783,642	+				-0.7
4,783,642	+				-1.0
4,783,642	+				-1.4
4,783,642	+				-0.9
4,783,643	-				+1.7
4,783,643	-				-0.2
4,783,643	-				-0.1
4,783,643	-				-1.3
4,783,643	-				+1.1
4,783,643	-				-0.1
4,783,681	+				+0.6
4,783,681	+				+0.1
4,783,682	-				+0.0
4,783,682	-				+0.3
4,783,682	-				-1.7
4,783,682	-				+0.9
4,783,682	-				-0.4
4,783,698	-				-0.9
4,783,724	+		HGI48_RS21435	0.10	+0.4
4,783,724	+		HGI48_RS21435	0.10	-0.9
4,783,725	-		HGI48_RS21435	0.10	-0.7
4,783,745	-		HGI48_RS21435	0.11	-0.7
4,783,745	-		HGI48_RS21435	0.11	-0.4
4,783,748	-		HGI48_RS21435	0.11	-0.9
4,783,766	+		HGI48_RS21435	0.12	+0.9
4,783,767	-		HGI48_RS21435	0.12	-0.3
4,783,871	+		HGI48_RS21435	0.17	-0.3
4,783,871	+		HGI48_RS21435	0.17	+0.6
4,783,871	+		HGI48_RS21435	0.17	+0.6
4,783,872	-		HGI48_RS21435	0.17	-0.7
4,783,916	+		HGI48_RS21435	0.19	-0.3
4,784,145	-		HGI48_RS21435	0.29	-1.4
4,784,196	-		HGI48_RS21435	0.32	-0.0
4,784,300	-		HGI48_RS21435	0.36	-0.1
4,784,360	+		HGI48_RS21435	0.39	-0.4
4,784,360	+		HGI48_RS21435	0.39	-1.2
4,784,360	+		HGI48_RS21435	0.39	-0.4
4,784,361	-		HGI48_RS21435	0.39	-1.9
4,784,361	-		HGI48_RS21435	0.39	+1.9
4,784,397	+		HGI48_RS21435	0.41	+0.0
4,784,398	-		HGI48_RS21435	0.41	-0.2
4,784,398	-		HGI48_RS21435	0.41	-0.4
4,784,410	+		HGI48_RS21435	0.41	-0.2
4,784,411	-		HGI48_RS21435	0.41	-0.7
4,784,527	+		HGI48_RS21435	0.47	+1.1
4,784,527	+				+0.1
4,784,527	+		HGI48_RS21435	0.47	+1.3
4,784,527	+				+0.6
4,784,527	+		HGI48_RS21435	0.47	-2.6
4,784,527	+		HGI48_RS21435	0.47	-1.0
4,784,527	+				-0.4
4,784,527	+		HGI48_RS21435	0.47	-0.7
4,784,527	+		HGI48_RS21435	0.47	-0.4
4,784,527	+		HGI48_RS21435	0.47	+0.1
4,784,528	-		HGI48_RS21435	0.47	+0.1
4,784,528	-		HGI48_RS21435	0.47	+0.3
4,784,528	-		HGI48_RS21435	0.47	-0.2
4,784,614	+		HGI48_RS21435	0.51	-1.7
4,784,614	+		HGI48_RS21435	0.51	-1.9
4,784,615	-		HGI48_RS21435	0.51	-0.7
4,784,615	-		HGI48_RS21435	0.51	-1.6
4,784,615	-		HGI48_RS21435	0.51	+1.7
4,784,657	+		HGI48_RS21435	0.52	-0.4
4,784,657	+		HGI48_RS21435	0.52	-0.1
4,784,657	+		HGI48_RS21435	0.52	-0.4
4,784,669	-				+1.1
4,784,738	+		HGI48_RS21435	0.56	-0.2
4,784,740	+		HGI48_RS21435	0.56	+0.0
4,784,740	+		HGI48_RS21435	0.56	-0.3
4,784,740	+		HGI48_RS21435	0.56	+0.7
4,784,740	+		HGI48_RS21435	0.56	+0.6
4,784,740	+		HGI48_RS21435	0.56	-0.7
4,784,740	+		HGI48_RS21435	0.56	+0.1
4,784,740	+		HGI48_RS21435	0.56	+0.9
4,784,741	-		HGI48_RS21435	0.56	-1.4
4,784,741	-		HGI48_RS21435	0.56	-0.4
4,784,741	-		HGI48_RS21435	0.56	-0.2
4,784,741	-		HGI48_RS21435	0.56	-1.2
4,784,741	-		HGI48_RS21435	0.56	+0.1
4,784,764	+				+0.1
4,784,796	+		HGI48_RS21435	0.59	+0.1
4,784,796	+		HGI48_RS21435	0.59	+0.6
4,784,797	-		HGI48_RS21435	0.59	+0.1
4,784,797	-				+0.1
4,784,889	+		HGI48_RS21435	0.63	+1.0
4,784,889	+		HGI48_RS21435	0.63	-0.1
4,784,890	-		HGI48_RS21435	0.63	-0.4
4,784,923	+		HGI48_RS21435	0.65	+0.1
4,784,923	+		HGI48_RS21435	0.65	-0.2
4,784,923	+		HGI48_RS21435	0.65	+0.3
4,784,923	+		HGI48_RS21435	0.65	-0.9
4,784,923	+		HGI48_RS21435	0.65	-0.8
4,784,923	+		HGI48_RS21435	0.65	+0.0
4,784,923	+		HGI48_RS21435	0.65	-2.2
4,784,923	+		HGI48_RS21435	0.65	-0.9
4,784,923	+				+1.9
4,784,923	+		HGI48_RS21435	0.65	-0.2
4,784,923	+		HGI48_RS21435	0.65	-0.3
4,784,923	+		HGI48_RS21435	0.65	+0.1
4,784,923	+		HGI48_RS21435	0.65	+0.3
4,784,923	+		HGI48_RS21435	0.65	+0.6
4,784,923	+				+1.1
4,784,923	+		HGI48_RS21435	0.65	+0.4
4,784,923	+				+2.5
4,784,923	+				-0.4
4,784,923	+				+0.1
4,784,923	+		HGI48_RS21435	0.65	+2.7
4,784,923	+		HGI48_RS21435	0.65	+1.1
4,784,923	+		HGI48_RS21435	0.65	-0.9
4,784,923	+		HGI48_RS21435	0.65	-1.4
4,784,924	-		HGI48_RS21435	0.65	-0.9
4,784,924	-		HGI48_RS21435	0.65	-0.0
4,784,924	-		HGI48_RS21435	0.65	-0.4
4,784,924	-		HGI48_RS21435	0.65	-0.7
4,784,924	-		HGI48_RS21435	0.65	-2.3
4,784,924	-		HGI48_RS21435	0.65	+1.1
4,784,924	-		HGI48_RS21435	0.65	-0.0
4,784,924	-		HGI48_RS21435	0.65	-0.7
4,784,924	-		HGI48_RS21435	0.65	-1.4
4,784,924	-		HGI48_RS21435	0.65	+0.1
4,784,924	-		HGI48_RS21435	0.65	-1.8
4,784,924	-		HGI48_RS21435	0.65	+1.1
4,784,924	-		HGI48_RS21435	0.65	-0.0
4,784,924	-		HGI48_RS21435	0.65	-1.2
4,784,924	-		HGI48_RS21435	0.65	-1.9
4,784,924	-		HGI48_RS21435	0.65	-1.2
4,784,926	+		HGI48_RS21435	0.65	-0.4
4,784,926	+		HGI48_RS21435	0.65	+0.4
4,784,927	-		HGI48_RS21435	0.65	-0.6
4,784,927	-				+0.6
4,784,927	-		HGI48_RS21435	0.65	-0.3
4,784,927	-		HGI48_RS21435	0.65	-0.0
4,784,927	-		HGI48_RS21435	0.65	+1.1
4,784,927	-		HGI48_RS21435	0.65	+1.7
4,785,007	+		HGI48_RS21435	0.68	+1.0
4,785,008	-		HGI48_RS21435	0.68	-1.1
4,785,008	-		HGI48_RS21435	0.68	-0.8
4,785,015	-		HGI48_RS21435	0.69	-0.4
4,785,089	-		HGI48_RS21435	0.72	+0.8
4,785,185	+		HGI48_RS21435	0.76	-1.2
4,785,185	+		HGI48_RS21435	0.76	+0.5
4,785,186	-		HGI48_RS21435	0.76	+0.4
4,785,186	-		HGI48_RS21435	0.76	-0.9
4,785,241	+		HGI48_RS21435	0.79	-0.0
4,785,241	+		HGI48_RS21435	0.79	+2.0
4,785,242	-				+2.7
4,785,242	-		HGI48_RS21435	0.79	-1.9
4,785,404	-		HGI48_RS21435	0.86	-1.0
4,785,428	+		HGI48_RS21435	0.87	-1.1
4,785,428	+		HGI48_RS21435	0.87	+1.1
4,785,428	+		HGI48_RS21435	0.87	-0.4
4,785,429	-		HGI48_RS21435	0.87	+0.1
4,785,429	-				+1.6
4,785,429	-		HGI48_RS21435	0.87	+0.1
4,785,461	+				+1.6
4,785,462	-		HGI48_RS21435	0.89	+0.2
4,785,492	+				-1.2
4,785,492	+				-1.2
4,785,492	+				+0.6
4,785,493	-				+1.4
4,785,493	-				-0.9
4,785,493	-				+1.1
4,785,666	-				-0.5
4,785,666	-				+0.4
4,785,678	+				+0.5
4,785,679	-				-2.0
4,785,679	-				+0.1
4,785,679	-				+0.8
4,785,697	+				-1.4
4,785,697	+				-1.1
4,785,697	+				+1.6
4,785,697	+				+0.5
4,785,697	+				+0.7
4,785,697	+				+0.9
4,785,698	-				+1.1
4,785,698	-				+0.3
4,785,698	-				-0.7
4,785,698	-				-1.4
4,785,698	-				+0.3
4,785,698	-				-0.9
4,785,698	-				+0.1
4,785,698	-				-0.9
4,785,698	-				+0.1
4,785,698	-				-0.7
4,785,719	+				+0.1
4,785,719	+				+0.2
4,785,719	+				-0.9
4,785,719	+				-0.2
4,785,719	+				+0.3
4,785,719	+				+0.7
4,785,720	-				-0.4
4,785,720	-				-0.9
4,785,720	-				+0.6
4,785,720	-				-0.2
4,785,720	-				+0.1
4,785,720	-				+0.9
4,785,720	-				+0.4
4,785,720	-				-0.4
4,785,741	+				+1.0
4,785,742	-				+1.5
4,785,742	-				+0.6
4,785,788	+				-1.0
4,785,824	+				-0.4
4,785,825	-				-0.4
4,785,841	+				-0.4
4,785,842	-				+1.3
4,785,842	-				+0.7
4,785,845	+				+0.7
4,785,845	+				-0.2
4,785,845	+				-0.1
4,785,845	+				+0.6
4,785,845	+				-1.2
4,785,845	+				+0.1
4,785,846	-				-0.9
4,785,846	-				-1.4
4,785,846	-				-1.7
4,785,846	-				+0.1
4,785,846	-				-0.3
4,785,848	+				-0.6
4,785,849	-				+1.0
4,785,849	-				-0.5