Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21335

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,762,230	-				-0.4
4,762,230	-		HGI48_RS21330	0.34	-0.2
4,762,230	-		HGI48_RS21330	0.34	-0.3
4,762,231	+		HGI48_RS21330	0.34	+0.3
4,762,231	+		HGI48_RS21330	0.34	+0.4
4,762,231	+		HGI48_RS21330	0.34	+1.9
4,762,232	-		HGI48_RS21330	0.34	+0.1
4,762,283	+		HGI48_RS21330	0.38	-0.4
4,762,502	+		HGI48_RS21330	0.52	-0.3
4,762,502	+		HGI48_RS21330	0.52	-0.1
4,762,502	+		HGI48_RS21330	0.52	+2.0
4,762,634	+		HGI48_RS21330	0.61	-1.2
4,762,634	+		HGI48_RS21330	0.61	+0.7
4,762,634	+		HGI48_RS21330	0.61	+0.6
4,762,634	+		HGI48_RS21330	0.61	+0.2
4,762,634	+		HGI48_RS21330	0.61	+0.4
4,762,634	+		HGI48_RS21330	0.61	+1.8
4,762,635	-		HGI48_RS21330	0.61	+0.4
4,762,635	-		HGI48_RS21330	0.61	-2.0
4,762,635	-				+1.1
4,762,636	+		HGI48_RS21330	0.61	-1.3
4,762,636	+		HGI48_RS21330	0.61	+0.1
4,762,636	+		HGI48_RS21330	0.61	-1.1
4,762,636	+		HGI48_RS21330	0.61	+0.6
4,762,636	+		HGI48_RS21330	0.61	+0.7
4,762,636	+		HGI48_RS21330	0.61	+0.1
4,762,636	+		HGI48_RS21330	0.61	-0.2
4,762,636	+		HGI48_RS21330	0.61	+0.4
4,762,637	-		HGI48_RS21330	0.61	+1.1
4,762,637	-				+0.1
4,762,637	-		HGI48_RS21330	0.61	-0.5
4,762,637	-		HGI48_RS21330	0.61	-1.2
4,762,637	-		HGI48_RS21330	0.61	+0.4
4,762,670	+		HGI48_RS21330	0.63	-0.3
4,762,867	+		HGI48_RS21330	0.76	+0.1
4,762,867	+		HGI48_RS21330	0.76	+1.3
4,762,867	+		HGI48_RS21330	0.76	+1.1
4,762,867	+				-0.4
4,762,867	+		HGI48_RS21330	0.76	-1.4
4,762,868	-				+1.1
4,762,868	-		HGI48_RS21330	0.76	-0.4
4,762,868	-		HGI48_RS21330	0.76	-2.8
4,762,868	-		HGI48_RS21330	0.76	-0.7
4,762,904	+		HGI48_RS21330	0.79	-1.4
4,763,043	-				-0.4
4,763,076	+				+0.4
4,763,076	+				+0.1
4,763,076	+				+2.6
4,763,076	+				+0.6
4,763,077	-				+1.7
4,763,141	-				-0.9
4,763,141	-				-0.9
4,763,212	-				-1.4
4,763,268	-				-1.0
4,763,293	-		HGI48_RS21335	0.15	-2.3
4,763,327	+				+1.1
4,763,327	+		HGI48_RS21335	0.23	+0.1
4,763,342	+		HGI48_RS21335	0.27	-0.2
4,763,342	+				-0.4
4,763,342	+		HGI48_RS21335	0.27	-0.9
4,763,342	+		HGI48_RS21335	0.27	+0.7
4,763,342	+		HGI48_RS21335	0.27	+0.3
4,763,342	+		HGI48_RS21335	0.27	-1.0
4,763,343	-				-0.4
4,763,343	-		HGI48_RS21335	0.27	+0.3
4,763,343	-		HGI48_RS21335	0.27	-0.4
4,763,343	-		HGI48_RS21335	0.27	+1.0
4,763,355	+		HGI48_RS21335	0.30	+1.1
4,763,355	+		HGI48_RS21335	0.30	+1.1
4,763,356	-		HGI48_RS21335	0.30	+0.6
4,763,356	-				+1.6
4,763,356	-		HGI48_RS21335	0.30	-0.2
4,763,358	+		HGI48_RS21335	0.30	-0.1
4,763,358	+				-0.4
4,763,358	+		HGI48_RS21335	0.30	-1.9
4,763,359	-				+0.6
4,763,359	-		HGI48_RS21335	0.31	+0.8
4,763,359	-		HGI48_RS21335	0.31	+1.4
4,763,386	+		HGI48_RS21335	0.37	-1.3
4,763,386	+		HGI48_RS21335	0.37	+0.6
4,763,387	-		HGI48_RS21335	0.37	+0.9
4,763,418	+		HGI48_RS21335	0.45	-0.2
4,763,418	+		HGI48_RS21335	0.45	+0.8
4,763,419	-		HGI48_RS21335	0.45	+1.4
4,763,419	-		HGI48_RS21335	0.45	-0.0
4,763,419	-		HGI48_RS21335	0.45	+0.1
4,763,419	-		HGI48_RS21335	0.45	+0.0
4,763,419	-		HGI48_RS21335	0.45	+0.4
4,763,419	-		HGI48_RS21335	0.45	+0.7
4,763,511	+		HGI48_RS21335	0.67	-0.7
4,763,512	-		HGI48_RS21335	0.67	+0.3
4,763,589	+		HGI48_RS21335	0.85	-1.1
4,763,620	-				-0.4
4,763,628	+				+1.6
4,763,629	-				-0.9
4,763,629	-				+0.4
4,763,633	-				-0.6
4,763,657	+				-1.2
4,763,658	-				-0.1
4,763,729	-				-0.9
4,763,729	-				-0.2
4,763,767	-				+0.1
4,763,767	-				+0.4
4,763,769	+				-1.0
4,763,769	+				+1.1
4,763,769	+				+1.7
4,763,770	-				-0.6
4,763,784	-				-0.4
4,763,784	-				+0.4
4,763,788	+				+1.4
4,763,791	+				+0.1
4,763,791	+				-1.2
4,763,791	+				+0.7
4,763,792	-				+2.1
4,763,857	+				-0.7
4,763,857	+				-0.1
4,763,857	+				-0.9
4,763,857	+				+1.1
4,763,857	+				-0.7
4,763,858	-				+2.0
4,763,858	-				+0.1
4,763,858	-				-0.2
4,763,858	-				-0.3
4,763,874	+				+0.9
4,763,903	+		HGI48_RS21340	0.12	-1.4
4,763,903	+		HGI48_RS21340	0.12	-0.9
4,763,903	+				+0.1
4,763,903	+		HGI48_RS21340	0.12	-0.5
4,763,904	-		HGI48_RS21340	0.12	+1.1
4,763,904	-		HGI48_RS21340	0.12	+0.6
4,763,935	-		HGI48_RS21340	0.19	-0.0
4,763,989	-		HGI48_RS21340	0.33	+1.1
4,764,022	+		HGI48_RS21340	0.41	+1.7
4,764,022	+		HGI48_RS21340	0.41	+1.4
4,764,022	+		HGI48_RS21340	0.41	-0.9
4,764,023	-				+1.7
4,764,051	-		HGI48_RS21340	0.48	-0.7
4,764,051	-		HGI48_RS21340	0.48	-0.0
4,764,053	+		HGI48_RS21340	0.48	-0.1
4,764,053	+		HGI48_RS21340	0.48	+0.1
4,764,053	+		HGI48_RS21340	0.48	+0.2
4,764,053	+		HGI48_RS21340	0.48	-1.0
4,764,053	+		HGI48_RS21340	0.48	+0.6
4,764,053	+		HGI48_RS21340	0.48	-0.6
4,764,054	-		HGI48_RS21340	0.49	-1.2
4,764,054	-		HGI48_RS21340	0.49	-0.3
4,764,054	-		HGI48_RS21340	0.49	-0.9
4,764,054	-		HGI48_RS21340	0.49	-1.2
4,764,087	-		HGI48_RS21340	0.57	-0.7
4,764,143	+		HGI48_RS21340	0.70	+2.2
4,764,208	+		HGI48_RS21340	0.86	-0.4
4,764,208	+				+2.7
4,764,208	+		HGI48_RS21340	0.86	+0.4
4,764,208	+		HGI48_RS21340	0.86	-0.7
4,764,226	-				-0.2
4,764,246	+				+2.3
4,764,247	-				+0.3
4,764,247	-				+0.9
4,764,247	-				+0.3
4,764,247	-				-0.4
4,764,281	+				-1.4
4,764,281	+				-0.2
4,764,281	+				-1.7
4,764,281	+				+0.7
4,764,282	-				-0.4
4,764,282	-				-1.7
4,764,282	-				-0.9
4,764,282	-				-0.5
4,764,282	-				-0.7
4,764,282	-				+0.1
4,764,282	-				-1.8
4,764,282	-				-0.4
4,764,282	-				+1.1
4,764,282	-				+1.1
4,764,282	-				-1.9
4,764,316	-				+1.1
4,764,318	+				+1.7
4,764,345	+				-0.2
4,764,345	+				-0.2
4,764,345	+				+0.1
4,764,345	+				+0.8
4,764,345	+				+0.8
4,764,346	-				-1.4
4,764,368	+				-0.7
4,764,368	+				+1.6
4,764,369	-				-0.4
4,764,369	-				-1.2
4,764,372	+				-1.9
4,764,414	+				-0.4
4,764,415	-				-0.4
4,764,415	-				-1.4
4,764,433	+				-0.7
4,764,433	+				+0.3
4,764,433	+				-0.9
4,764,438	+				+0.4
4,764,438	+				-1.2
4,764,438	+				+1.1
4,764,438	+				+1.7
4,764,439	-				-2.0
4,764,439	-				+1.0
4,764,439	-				+0.6
4,764,439	-				+1.6
4,764,439	-				+0.6
4,764,439	-				-0.2
4,764,439	-				+0.9
4,764,439	-				+0.0
4,764,439	-				-0.4
4,764,439	-				-1.2
4,764,439	-				+2.4
4,764,439	-				+0.1
4,764,439	-				+0.1
4,764,440	+				+1.3
4,764,476	+				-0.3
4,764,476	+				+2.8
4,764,477	-				+0.1
4,764,477	-				-0.7
4,764,477	-				-1.9
4,764,477	-				+0.5
4,764,477	-				+0.1
4,764,477	-				-0.7
4,764,477	-				+1.8
4,764,543	+		HGI48_RS21345	0.11	+0.9
4,764,602	-		HGI48_RS21345	0.20	-0.4
4,764,602	-		HGI48_RS21345	0.20	+0.6
4,764,602	-		HGI48_RS21345	0.20	+0.6
4,764,602	-		HGI48_RS21345	0.20	+1.1