Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21120

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,711,866	+		HGI48_RS21115	0.26	+0.6
4,711,960	+				+0.6
4,712,210	-		HGI48_RS21115	0.66	+2.2
4,712,210	-		HGI48_RS21115	0.66	-0.2
4,712,357	+		HGI48_RS21115	0.84	+1.4
4,712,358	-		HGI48_RS21115	0.84	-0.9
4,712,358	-		HGI48_RS21115	0.84	-1.2
4,712,358	-		HGI48_RS21115	0.84	-0.3
4,712,378	-		HGI48_RS21115	0.86	-0.9
4,712,390	+				-0.4
4,712,391	-		HGI48_RS21115	0.88	-0.2
4,712,391	-		HGI48_RS21115	0.88	-0.7
4,712,414	+				+0.6
4,712,414	+				-1.2
4,712,415	-				+0.8
4,712,415	-				-0.3
4,712,416	+				+0.4
4,712,416	+				+0.1
4,712,416	+				+1.1
4,712,416	+				+0.7
4,712,416	+				+1.1
4,712,416	+				-0.7
4,712,417	-				-0.3
4,712,417	-				-0.7
4,712,417	-				-0.4
4,712,417	-				-0.0
4,712,417	-				-1.0
4,712,417	-				-0.1
4,712,448	+				+1.1
4,712,527	-				+0.3
4,712,576	+				-0.5
4,712,576	+				-0.4
4,712,576	+				-2.2
4,712,577	-				-0.9
4,712,579	+				+0.8
4,712,580	-				-1.4
4,712,580	-				-0.9
4,712,593	+				-0.4
4,712,593	+				-1.0
4,712,638	-				-0.9
4,712,638	-				-0.4
4,712,638	-				+1.1
4,712,638	-				+0.1
4,712,740	+				-1.7
4,712,744	+				-0.7
4,712,744	+				-0.4
4,712,772	+				+0.9
4,712,772	+				+1.7
4,712,773	-				-0.9
4,712,776	+				-0.4
4,712,777	-				+0.1
4,712,777	-				-0.1
4,712,777	-				-0.1
4,712,777	-				-1.4
4,712,836	+				+0.1
4,712,836	+				-1.2
4,712,836	+				+1.1
4,712,837	-				+0.3
4,712,837	-				+0.1
4,712,837	-				+0.1
4,712,851	+				+0.4
4,712,851	+				+0.0
4,712,851	+				-0.2
4,712,851	+				+0.5
4,712,851	+				-0.2
4,712,851	+				-1.0
4,712,851	+				+0.6
4,712,851	+				+0.1
4,712,851	+				-3.9
4,712,851	+				-2.7
4,712,851	+				+0.1
4,712,851	+				-0.4
4,712,851	+				+0.2
4,712,851	+				+0.6
4,712,852	-				-0.4
4,712,852	-				+0.4
4,712,852	-				-0.5
4,712,852	-				-0.4
4,712,852	-				+1.1
4,712,852	-				-0.4
4,712,852	-				+0.3
4,712,852	-				-1.0
4,712,852	-				+0.6
4,712,852	-				-0.2
4,712,856	+				+0.1
4,712,856	+				-0.9
4,712,857	-				+2.0
4,712,857	-				+0.8
4,712,965	-				-0.1
4,713,107	+		HGI48_RS21120	0.20	-0.3
4,713,120	-		HGI48_RS21120	0.21	-0.6
4,713,120	-				+1.7
4,713,234	+		HGI48_RS21120	0.30	+0.3
4,713,234	+				+0.1
4,713,234	+		HGI48_RS21120	0.30	-2.0
4,713,235	-		HGI48_RS21120	0.30	-1.2
4,713,235	-		HGI48_RS21120	0.30	+0.3
4,713,235	-		HGI48_RS21120	0.30	-0.2
4,713,442	+		HGI48_RS21120	0.46	+1.7
4,713,443	-		HGI48_RS21120	0.46	-1.9
4,713,499	+				-0.4
4,713,499	+		HGI48_RS21120	0.51	-0.4
4,713,499	+		HGI48_RS21120	0.51	-0.2
4,713,500	-		HGI48_RS21120	0.51	-2.3
4,713,500	-		HGI48_RS21120	0.51	-0.1
4,713,500	-		HGI48_RS21120	0.51	-0.4
4,713,500	-		HGI48_RS21120	0.51	-0.4
4,713,565	+		HGI48_RS21120	0.56	+0.7
4,713,566	-		HGI48_RS21120	0.56	+1.0
4,713,650	+		HGI48_RS21120	0.62	+1.1
4,713,650	+		HGI48_RS21120	0.62	-0.3
4,713,650	+		HGI48_RS21120	0.62	-0.3
4,713,651	-		HGI48_RS21120	0.62	+0.1
4,713,651	-		HGI48_RS21120	0.62	-0.3
4,713,674	+		HGI48_RS21120	0.64	+2.4
4,713,674	+		HGI48_RS21120	0.64	-0.2
4,713,776	+		HGI48_RS21120	0.72	+0.8
4,713,776	+		HGI48_RS21120	0.72	-1.4
4,713,776	+		HGI48_RS21120	0.72	-0.7
4,713,777	-		HGI48_RS21120	0.72	-0.9
4,713,777	-		HGI48_RS21120	0.72	+2.0
4,713,777	-		HGI48_RS21120	0.72	+0.7
4,713,777	-		HGI48_RS21120	0.72	+0.7
4,713,932	+		HGI48_RS21120	0.84	+1.1
4,713,932	+		HGI48_RS21120	0.84	+0.3
4,713,932	+		HGI48_RS21120	0.84	+0.9
4,713,933	-		HGI48_RS21120	0.84	-0.1
4,713,933	-		HGI48_RS21120	0.84	-0.6
4,714,058	+				+1.1
4,714,058	+				-0.1
4,714,058	+				+1.5
4,714,059	-				+0.8
4,714,059	-				+1.6
4,714,059	-				-1.2
4,714,131	-				-1.2
4,714,131	-				-1.9
4,714,131	-				+0.2
4,714,133	+				+0.1
4,714,133	+				-0.4
4,714,133	+				+1.0
4,714,133	+				-0.4
4,714,133	+				+1.1
4,714,133	+				+2.0
4,714,134	-				-0.9
4,714,134	-				+0.6
4,714,134	-				+0.8
4,714,137	+				-1.2
4,714,137	+				-1.0
4,714,137	+				-0.0
4,714,138	-				-0.1
4,714,138	-				-0.6
4,714,138	-				+0.0
4,714,138	-				+0.3
4,714,157	-				-0.7
4,714,171	+				-0.2
4,714,171	+				+0.1
4,714,171	+				-1.9
4,714,171	+				-1.0
4,714,172	-				-0.4
4,714,172	-				-0.4
4,714,172	-				-1.4
4,714,341	+		HGI48_RS21125	0.11	+0.1
4,714,342	-		HGI48_RS21125	0.11	-0.7
4,714,342	-				+2.7
4,714,359	+		HGI48_RS21125	0.12	+1.2
4,714,359	+				+2.4
4,714,360	-		HGI48_RS21125	0.13	-0.4
4,714,360	-		HGI48_RS21125	0.13	-0.2
4,714,394	+				+2.1
4,714,395	-		HGI48_RS21125	0.16	-0.6
4,714,447	+		HGI48_RS21125	0.20	+0.2
4,714,448	-		HGI48_RS21125	0.20	+0.5
4,714,661	+		HGI48_RS21125	0.38	-0.1
4,714,661	+		HGI48_RS21125	0.38	-1.3
4,714,661	+				+0.1
4,714,661	+		HGI48_RS21125	0.38	-1.7
4,714,662	-		HGI48_RS21125	0.38	-0.0
4,714,662	-		HGI48_RS21125	0.38	-0.9
4,714,705	+		HGI48_RS21125	0.42	-0.2
4,714,705	+		HGI48_RS21125	0.42	-0.6
4,714,705	+		HGI48_RS21125	0.42	-1.1
4,714,705	+		HGI48_RS21125	0.42	-1.9
4,714,705	+		HGI48_RS21125	0.42	+0.7
4,714,705	+		HGI48_RS21125	0.42	-0.3
4,714,705	+				-0.4
4,714,705	+		HGI48_RS21125	0.42	-0.1
4,714,705	+				+0.1
4,714,812	+		HGI48_RS21125	0.51	+0.8
4,714,812	+		HGI48_RS21125	0.51	-0.8
4,714,812	+		HGI48_RS21125	0.51	-0.9
4,714,813	-		HGI48_RS21125	0.51	-0.4
4,714,813	-		HGI48_RS21125	0.51	+0.7
4,714,813	-		HGI48_RS21125	0.51	-0.9
4,714,813	-		HGI48_RS21125	0.51	+0.0
4,715,098	+		HGI48_RS21125	0.76	-1.8