Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17790

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,989,297	+		HGI48_RS17785	0.44	-0.6
3,989,297	+		HGI48_RS17785	0.44	+0.8
3,989,298	-		HGI48_RS17785	0.44	-0.6
3,989,298	-		HGI48_RS17785	0.44	+0.0
3,989,426	+		HGI48_RS17785	0.55	+0.6
3,989,426	+		HGI48_RS17785	0.55	-2.0
3,989,426	+		HGI48_RS17785	0.55	-0.4
3,989,426	+		HGI48_RS17785	0.55	-0.2
3,989,426	+		HGI48_RS17785	0.55	-1.7
3,989,426	+		HGI48_RS17785	0.55	-0.9
3,989,426	+		HGI48_RS17785	0.55	-1.1
3,989,426	+				+2.3
3,989,427	-		HGI48_RS17785	0.55	-0.3
3,989,427	-		HGI48_RS17785	0.55	+1.0
3,989,427	-		HGI48_RS17785	0.55	-1.2
3,989,427	-		HGI48_RS17785	0.55	-0.3
3,989,427	-		HGI48_RS17785	0.55	+0.5
3,989,427	-		HGI48_RS17785	0.55	+0.2
3,989,509	+		HGI48_RS17785	0.62	+0.3
3,989,509	+		HGI48_RS17785	0.62	-1.0
3,989,509	+		HGI48_RS17785	0.62	+0.2
3,989,509	+				-0.6
3,989,510	-		HGI48_RS17785	0.62	+0.8
3,989,510	-		HGI48_RS17785	0.62	+0.0
3,989,525	+		HGI48_RS17785	0.64	-1.6
3,989,526	-		HGI48_RS17785	0.64	-0.5
3,989,526	-		HGI48_RS17785	0.64	-2.7
3,989,526	-		HGI48_RS17785	0.64	-0.1
3,989,526	-		HGI48_RS17785	0.64	-1.1
3,989,528	+		HGI48_RS17785	0.64	+0.2
3,989,528	+		HGI48_RS17785	0.64	-0.3
3,989,528	+		HGI48_RS17785	0.64	-0.3
3,989,528	+				+1.0
3,989,529	-				+0.0
3,989,529	-		HGI48_RS17785	0.64	+0.0
3,989,529	-		HGI48_RS17785	0.64	-1.0
3,989,600	+		HGI48_RS17785	0.70	-1.0
3,989,600	+		HGI48_RS17785	0.70	-1.2
3,989,601	-		HGI48_RS17785	0.70	-1.6
3,989,760	-		HGI48_RS17785	0.84	+0.4
3,989,838	-				+0.8
3,989,862	+				+0.0
3,989,863	-				+0.8
3,989,863	-				-0.5
3,989,922	-				+0.4
3,989,922	-				-0.4
3,989,922	-				-0.6
3,989,976	+				-0.6
3,989,976	+				-2.8
3,989,992	-				+2.0
3,989,992	-				+0.5
3,990,041	+				-0.8
3,990,042	-				-1.8
3,990,059	-				-1.6
3,990,102	-				+0.5
3,990,102	-				-0.6
3,990,357	+		HGI48_RS17790	0.36	-1.8
3,990,357	+		HGI48_RS17790	0.36	-2.1
3,990,357	+				+2.0
3,990,357	+		HGI48_RS17790	0.36	-0.5
3,990,358	-		HGI48_RS17790	0.36	+0.7
3,990,358	-		HGI48_RS17790	0.36	-0.1
3,990,358	-		HGI48_RS17790	0.36	+0.4
3,990,438	+		HGI48_RS17790	0.45	+1.4
3,990,438	+		HGI48_RS17790	0.45	+0.4
3,990,438	+		HGI48_RS17790	0.45	-1.0
3,990,438	+		HGI48_RS17790	0.45	+0.0
3,990,438	+		HGI48_RS17790	0.45	+0.2
3,990,438	+		HGI48_RS17790	0.45	+0.8
3,990,438	+		HGI48_RS17790	0.45	-0.7
3,990,438	+		HGI48_RS17790	0.45	-1.6
3,990,439	-		HGI48_RS17790	0.46	-2.1
3,990,540	+		HGI48_RS17790	0.57	+0.0
3,990,541	-		HGI48_RS17790	0.57	+1.0
3,990,653	+		HGI48_RS17790	0.70	+0.0
3,990,653	+		HGI48_RS17790	0.70	-1.6
3,990,654	-		HGI48_RS17790	0.70	-1.8
3,990,839	-				-0.2
3,990,885	-				-0.6
3,990,885	-				-1.2
3,990,899	+				-1.0
3,990,899	+				+0.1
3,990,899	+				-2.9
3,990,900	-				-1.7
3,990,903	-				-0.1
3,990,930	+				-0.4
3,990,930	+				-0.8
3,990,930	+				+0.6
3,990,930	+				-1.0
3,990,930	+				+0.7
3,990,930	+				-0.4
3,990,931	-				+0.8
3,990,936	+				-1.3
3,990,936	+				+0.6
3,990,942	+				-1.4
3,990,942	+				-0.8
3,990,943	-				-1.6
3,990,943	-				-0.6
3,990,943	-				-0.7
3,991,012	+				-0.2
3,991,012	+				+0.6
3,991,012	+				-1.6
3,991,012	+				-1.3
3,991,012	+				+0.0
3,991,012	+				-1.1
3,991,012	+				-1.2
3,991,012	+				-1.0
3,991,012	+				-0.6
3,991,012	+				+0.2
3,991,013	-				-1.6
3,991,013	-				+0.4
3,991,013	-				-1.0
3,991,013	-				+1.0
3,991,013	-				+0.5
3,991,013	-				+0.0
3,991,013	-				-0.3
3,991,013	-				+0.0
3,991,013	-				-1.0
3,991,013	-				+1.0
3,991,013	-				-0.9
3,991,014	+				-1.0
3,991,047	-				+0.3
3,991,053	+				-1.6
3,991,054	-				+0.0
3,991,258	+		HGI48_RS17795	0.21	+1.7
3,991,259	-		HGI48_RS17795	0.21	-0.2
3,991,259	-		HGI48_RS17795	0.21	+0.0
3,991,259	-		HGI48_RS17795	0.21	-1.6
3,991,259	-				+1.0
3,991,327	-		HGI48_RS17795	0.26	+1.0
3,991,327	-		HGI48_RS17795	0.26	+0.8
3,991,345	+		HGI48_RS17795	0.27	+0.4
3,991,346	-		HGI48_RS17795	0.27	+0.8
3,991,375	+		HGI48_RS17795	0.29	-1.3
3,991,376	-		HGI48_RS17795	0.29	+0.0
3,991,376	-		HGI48_RS17795	0.29	+1.0
3,991,376	-		HGI48_RS17795	0.29	+0.0
3,991,376	-		HGI48_RS17795	0.29	-0.6
3,991,376	-		HGI48_RS17795	0.29	-2.0
3,991,376	-		HGI48_RS17795	0.29	+0.8
3,991,376	-				+1.8
3,991,406	+		HGI48_RS17795	0.32	-0.8
3,991,407	-		HGI48_RS17795	0.32	+0.3
3,991,455	+		HGI48_RS17795	0.35	-0.8
3,991,455	+		HGI48_RS17795	0.35	-0.4
3,991,462	+		HGI48_RS17795	0.35	+1.0
3,991,463	-		HGI48_RS17795	0.36	+0.0
3,991,495	+		HGI48_RS17795	0.38	-1.4
3,991,495	+		HGI48_RS17795	0.38	-2.0
3,991,495	+		HGI48_RS17795	0.38	-2.1
3,991,495	+		HGI48_RS17795	0.38	+0.9
3,991,496	-		HGI48_RS17795	0.38	-1.0
3,991,496	-		HGI48_RS17795	0.38	-2.1
3,991,496	-		HGI48_RS17795	0.38	-0.2
3,991,496	-		HGI48_RS17795	0.38	+1.0
3,991,525	+		HGI48_RS17795	0.40	+1.2
3,991,525	+		HGI48_RS17795	0.40	-1.0
3,991,525	+		HGI48_RS17795	0.40	-0.1
3,991,525	+		HGI48_RS17795	0.40	-0.3
3,991,526	-				-0.6
3,991,526	-				+1.0
3,991,549	+		HGI48_RS17795	0.42	-0.1
3,991,549	+		HGI48_RS17795	0.42	-0.3
3,991,549	+		HGI48_RS17795	0.42	-1.3
3,991,549	+		HGI48_RS17795	0.42	-0.1
3,991,549	+		HGI48_RS17795	0.42	-0.5
3,991,550	-		HGI48_RS17795	0.42	+0.8
3,991,550	-		HGI48_RS17795	0.42	-0.8
3,991,550	-		HGI48_RS17795	0.42	-0.2
3,991,606	+		HGI48_RS17795	0.46	+0.7
3,991,606	+				+1.0
3,991,606	+		HGI48_RS17795	0.46	+0.3
3,991,606	+		HGI48_RS17795	0.46	+0.1
3,991,606	+		HGI48_RS17795	0.46	-0.8
3,991,606	+		HGI48_RS17795	0.46	-1.1
3,991,606	+		HGI48_RS17795	0.46	-1.3
3,991,606	+		HGI48_RS17795	0.46	-0.1
3,991,606	+		HGI48_RS17795	0.46	+1.5
3,991,607	-				+1.0
3,991,607	-				+2.0
3,991,607	-		HGI48_RS17795	0.46	-2.4
3,991,609	+		HGI48_RS17795	0.46	+1.4
3,991,770	+		HGI48_RS17795	0.57	+0.4
3,991,771	-		HGI48_RS17795	0.57	-0.8
3,991,917	+				+0.0
3,991,917	+		HGI48_RS17795	0.67	-1.6
3,991,918	-		HGI48_RS17795	0.68	-1.8