Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16130

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,620,947	-		HGI48_RS16120	0.81	+1.9
3,621,077	+				-0.7
3,621,077	+		HGI48_RS16120	0.89	+0.7
3,621,114	+				-0.9
3,621,135	-				-1.9
3,621,179	+				-0.3
3,621,197	+				-0.3
3,621,197	+				+0.1
3,621,197	+				-0.1
3,621,198	-				-0.3
3,621,198	-				+0.3
3,621,223	+				+0.2
3,621,224	-				+1.1
3,621,238	+				+0.2
3,621,266	-				+1.1
3,621,282	-				+0.3
3,621,282	-				+0.9
3,621,284	+				-1.1
3,621,284	+				+0.1
3,621,284	+				+1.6
3,621,284	+				+0.4
3,621,285	-				+0.3
3,621,285	-				+1.0
3,621,285	-				+0.5
3,621,285	-				-0.1
3,621,287	+				-0.3
3,621,287	+				-0.1
3,621,315	-				-1.1
3,621,331	+				+0.9
3,621,356	+				-1.9
3,621,356	+				-1.3
3,621,356	+				-2.0
3,621,356	+				-0.5
3,621,357	-				-0.7
3,621,357	-				-1.1
3,621,357	-				-0.8
3,621,357	-				+0.6
3,621,397	-				-0.1
3,621,453	+				+1.0
3,621,463	+				-0.8
3,621,463	+				-0.0
3,621,463	+				+1.2
3,621,463	+				+0.1
3,621,463	+				-1.1
3,621,464	-				-1.9
3,621,464	-				+0.6
3,621,464	-				+0.2
3,621,464	-				+1.2
3,621,464	-				+1.5
3,621,464	-				-1.9
3,621,596	+				+0.3
3,621,597	-		HGI48_RS16125	0.31	-0.7
3,621,607	-		HGI48_RS16125	0.34	+0.7
3,621,705	+		HGI48_RS16125	0.62	-1.2
3,621,705	+		HGI48_RS16125	0.62	+0.2
3,621,705	+		HGI48_RS16125	0.62	+0.9
3,621,705	+		HGI48_RS16125	0.62	-0.3
3,621,705	+		HGI48_RS16125	0.62	-1.2
3,621,705	+		HGI48_RS16125	0.62	-0.1
3,621,705	+		HGI48_RS16125	0.62	-1.4
3,621,705	+		HGI48_RS16125	0.62	+1.1
3,621,706	-		HGI48_RS16125	0.62	-1.0
3,621,706	-		HGI48_RS16125	0.62	-0.7
3,621,706	-		HGI48_RS16125	0.62	+0.9
3,621,706	-		HGI48_RS16125	0.62	+0.1
3,621,792	+		HGI48_RS16125	0.87	+1.2
3,621,792	+		HGI48_RS16125	0.87	-0.3
3,621,835	-				+0.2
3,621,842	-				-0.0
3,621,892	-				+0.5
3,621,892	-				-0.4
3,621,892	-				-1.3
3,621,892	-				+0.2
3,621,892	-				+0.7
3,621,892	-				+0.7
3,621,892	-				-0.2
3,621,892	-				-0.1
3,621,892	-				-0.0
3,621,895	+				-1.5
3,621,896	-				-0.0
3,621,896	-				+1.5
3,621,896	-				-0.2
3,621,896	-				+0.0
3,621,896	-				+0.1
3,621,896	-				-1.0
3,621,896	-				-0.1
3,621,901	-				+0.7
3,621,941	+				-0.8
3,621,941	+				+0.1
3,621,942	-				-1.9
3,621,967	-				+0.0
3,622,020	+				-0.2
3,622,020	+				-1.7
3,622,021	-				-0.3
3,622,021	-				-0.4
3,622,021	-				-1.4
3,622,021	-				+0.5
3,622,021	-				+0.5
3,622,021	-				-0.8
3,622,021	-				+0.1
3,622,082	+				+0.3
3,622,082	+		HGI48_RS16130	0.16	-1.7
3,622,099	+		HGI48_RS16130	0.18	+1.2
3,622,100	-		HGI48_RS16130	0.18	+0.5
3,622,100	-		HGI48_RS16130	0.18	-1.2
3,622,131	+		HGI48_RS16130	0.22	-2.3
3,622,131	+		HGI48_RS16130	0.22	-0.9
3,622,131	+		HGI48_RS16130	0.22	-0.0
3,622,132	-		HGI48_RS16130	0.22	+1.2
3,622,132	-		HGI48_RS16130	0.22	+2.5
3,622,132	-		HGI48_RS16130	0.22	+0.6
3,622,132	-		HGI48_RS16130	0.22	+1.3
3,622,241	+		HGI48_RS16130	0.34	-0.9
3,622,242	-		HGI48_RS16130	0.34	+1.2
3,622,242	-		HGI48_RS16130	0.34	-0.4
3,622,242	-				-0.7
3,622,246	+		HGI48_RS16130	0.35	-0.4
3,622,246	+		HGI48_RS16130	0.35	+0.2
3,622,246	+		HGI48_RS16130	0.35	-0.1
3,622,246	+		HGI48_RS16130	0.35	+3.2
3,622,246	+				+0.9
3,622,246	+		HGI48_RS16130	0.35	+0.6
3,622,246	+		HGI48_RS16130	0.35	+0.1
3,622,246	+		HGI48_RS16130	0.35	-0.7
3,622,246	+		HGI48_RS16130	0.35	+0.6
3,622,246	+		HGI48_RS16130	0.35	+0.2
3,622,246	+		HGI48_RS16130	0.35	+0.1
3,622,246	+				+2.2
3,622,246	+		HGI48_RS16130	0.35	+0.5
3,622,246	+		HGI48_RS16130	0.35	-0.4
3,622,246	+		HGI48_RS16130	0.35	-0.1
3,622,246	+		HGI48_RS16130	0.35	+2.4
3,622,246	+		HGI48_RS16130	0.35	+0.1
3,622,246	+		HGI48_RS16130	0.35	+0.3
3,622,246	+		HGI48_RS16130	0.35	-0.1
3,622,247	-		HGI48_RS16130	0.35	-0.5
3,622,247	-		HGI48_RS16130	0.35	-0.1
3,622,247	-		HGI48_RS16130	0.35	-0.1
3,622,247	-		HGI48_RS16130	0.35	-0.8
3,622,247	-		HGI48_RS16130	0.35	+0.1
3,622,247	-		HGI48_RS16130	0.35	-0.8
3,622,247	-		HGI48_RS16130	0.35	+0.1
3,622,247	-		HGI48_RS16130	0.35	+0.3
3,622,247	-		HGI48_RS16130	0.35	+1.2
3,622,247	-		HGI48_RS16130	0.35	-0.3
3,622,247	-		HGI48_RS16130	0.35	-1.3
3,622,247	-		HGI48_RS16130	0.35	+0.2
3,622,247	-		HGI48_RS16130	0.35	-0.1
3,622,247	-		HGI48_RS16130	0.35	-0.3
3,622,247	-		HGI48_RS16130	0.35	-3.4
3,622,247	-		HGI48_RS16130	0.35	+0.4
3,622,247	-		HGI48_RS16130	0.35	-1.1
3,622,247	-		HGI48_RS16130	0.35	-1.1
3,622,247	-		HGI48_RS16130	0.35	-0.2
3,622,247	-		HGI48_RS16130	0.35	+0.2
3,622,247	-		HGI48_RS16130	0.35	-1.4
3,622,247	-		HGI48_RS16130	0.35	-0.7
3,622,247	-		HGI48_RS16130	0.35	-0.7
3,622,247	-		HGI48_RS16130	0.35	-0.4
3,622,302	+		HGI48_RS16130	0.41	-0.2
3,622,302	+		HGI48_RS16130	0.41	+0.5
3,622,303	-		HGI48_RS16130	0.41	+0.9
3,622,303	-		HGI48_RS16130	0.41	-0.2
3,622,303	-		HGI48_RS16130	0.41	-1.4
3,622,310	+				-0.1
3,622,311	-		HGI48_RS16130	0.42	-0.3
3,622,311	-		HGI48_RS16130	0.42	+0.8
3,622,430	+		HGI48_RS16130	0.56	+0.7
3,622,454	+		HGI48_RS16130	0.59	-1.7
3,622,599	+		HGI48_RS16130	0.76	+0.2
3,622,620	+		HGI48_RS16130	0.78	-0.4
3,622,620	+		HGI48_RS16130	0.78	-0.3
3,622,620	+				+2.9
3,622,621	-		HGI48_RS16130	0.78	+0.6
3,622,621	-				+1.9
3,622,621	-		HGI48_RS16130	0.78	-0.3
3,622,621	-		HGI48_RS16130	0.78	+0.1
3,622,621	-		HGI48_RS16130	0.78	+0.7
3,622,621	-		HGI48_RS16130	0.78	-0.1
3,622,621	-		HGI48_RS16130	0.78	-0.1
3,622,621	-		HGI48_RS16130	0.78	+0.9
3,622,621	-		HGI48_RS16130	0.78	+0.7
3,622,621	-		HGI48_RS16130	0.78	-0.9
3,622,621	-		HGI48_RS16130	0.78	-0.7
3,622,621	-		HGI48_RS16130	0.78	-0.2
3,622,621	-		HGI48_RS16130	0.78	-0.3
3,622,621	-		HGI48_RS16130	0.78	-0.3
3,622,673	+		HGI48_RS16130	0.84	+0.2
3,622,674	-		HGI48_RS16130	0.84	+1.1
3,622,674	-		HGI48_RS16130	0.84	-1.0
3,622,674	-		HGI48_RS16130	0.84	-0.1
3,622,674	-		HGI48_RS16130	0.84	-1.1
3,622,732	-				+1.2
3,622,732	-				+1.9
3,622,734	+				-0.9
3,622,734	+				-0.9
3,622,734	+				+0.6
3,622,734	+				-0.9
3,622,735	-				-0.7
3,622,735	-				-0.2
3,622,776	+				+1.4
3,622,777	-				-0.3
3,622,780	+				+0.6
3,622,780	+				+0.1
3,622,781	-				+0.0
3,622,836	-				-0.4
3,622,878	-				+0.5
3,622,878	-				-0.5
3,622,895	+				+0.4
3,622,896	-				-0.6
3,622,896	-				+0.3
3,622,899	+				-0.8
3,622,899	+				+0.5
3,622,899	+				-2.3
3,622,899	+				+0.9
3,622,899	+				-1.5
3,622,899	+				-0.4
3,622,899	+				-0.3
3,622,899	+				-1.0
3,622,899	+				+1.4
3,622,899	+				+0.4
3,622,899	+				-0.9
3,622,899	+				-0.2
3,622,899	+				+0.3
3,622,899	+				-0.8
3,622,899	+				-0.1
3,622,900	-				-1.3
3,622,900	-				+0.4
3,622,900	-				-0.9
3,622,900	-				+0.7
3,622,900	-				-0.2
3,622,900	-				-1.1
3,622,900	-				+1.2
3,622,900	-				+0.3
3,622,900	-				+1.5
3,622,900	-				-0.3
3,622,900	-				-0.0
3,622,905	-				+1.1
3,622,905	-				-1.4
3,622,912	-				-1.4
3,622,941	+		HGI48_RS16135	0.13	+0.5
3,622,941	+		HGI48_RS16135	0.13	+1.6
3,622,941	+		HGI48_RS16135	0.13	-0.4
3,622,941	+		HGI48_RS16135	0.13	+1.7
3,622,941	+		HGI48_RS16135	0.13	+0.6
3,622,941	+		HGI48_RS16135	0.13	-1.2
3,622,942	-		HGI48_RS16135	0.13	+0.2
3,622,942	-				-0.7
3,622,942	-				+2.1
3,622,942	-		HGI48_RS16135	0.13	-0.1
3,622,942	-		HGI48_RS16135	0.13	-0.3
3,622,942	-		HGI48_RS16135	0.13	+0.2
3,622,942	-		HGI48_RS16135	0.13	+0.6
3,622,942	-		HGI48_RS16135	0.13	-0.4
3,622,943	+		HGI48_RS16135	0.13	-0.6
3,622,950	+		HGI48_RS16135	0.14	-1.7
3,622,950	+		HGI48_RS16135	0.14	-0.7
3,622,950	+		HGI48_RS16135	0.14	-0.2
3,622,950	+		HGI48_RS16135	0.14	-0.9
3,622,950	+		HGI48_RS16135	0.14	-1.1
3,622,950	+		HGI48_RS16135	0.14	-1.1
3,622,950	+		HGI48_RS16135	0.14	-0.1
3,622,950	+		HGI48_RS16135	0.14	+1.4
3,622,951	-		HGI48_RS16135	0.14	+0.7
3,622,951	-		HGI48_RS16135	0.14	-1.3
3,622,951	-		HGI48_RS16135	0.14	-0.4
3,622,951	-		HGI48_RS16135	0.14	+1.4
3,622,965	+		HGI48_RS16135	0.16	-1.7
3,622,965	+		HGI48_RS16135	0.16	+0.9
3,622,965	+		HGI48_RS16135	0.16	-1.1
3,622,965	+		HGI48_RS16135	0.16	-1.4
3,622,965	+		HGI48_RS16135	0.16	-0.7
3,622,965	+		HGI48_RS16135	0.16	-1.1
3,622,965	+		HGI48_RS16135	0.16	-0.1
3,622,965	+		HGI48_RS16135	0.16	+0.1
3,622,965	+				+0.9
3,622,965	+		HGI48_RS16135	0.16	-0.4
3,622,966	-		HGI48_RS16135	0.16	-1.4
3,622,966	-		HGI48_RS16135	0.16	-0.0
3,622,966	-		HGI48_RS16135	0.16	+0.5
3,622,966	-		HGI48_RS16135	0.16	-0.9
3,622,966	-		HGI48_RS16135	0.16	+0.1
3,622,998	-		HGI48_RS16135	0.20	-1.1
3,623,034	-		HGI48_RS16135	0.25	-0.1
3,623,049	+				+1.5
3,623,177	+		HGI48_RS16135	0.43	-0.1
3,623,177	+		HGI48_RS16135	0.43	+0.1
3,623,177	+		HGI48_RS16135	0.43	+0.6
3,623,177	+		HGI48_RS16135	0.43	+0.7
3,623,177	+		HGI48_RS16135	0.43	+0.2
3,623,177	+				+0.3
3,623,178	-				+0.9
3,623,178	-		HGI48_RS16135	0.43	+0.2
3,623,194	-		HGI48_RS16135	0.45	-0.1
3,623,252	+		HGI48_RS16135	0.52	+0.2
3,623,252	+		HGI48_RS16135	0.52	+0.1
3,623,252	+		HGI48_RS16135	0.52	-1.7
3,623,252	+		HGI48_RS16135	0.52	-0.4
3,623,253	-		HGI48_RS16135	0.52	-1.1
3,623,289	+		HGI48_RS16135	0.57	-0.2
3,623,290	-		HGI48_RS16135	0.57	+0.3
3,623,306	-		HGI48_RS16135	0.59	-1.4
3,623,436	+		HGI48_RS16135	0.75	+0.3
3,623,437	-		HGI48_RS16135	0.75	+0.9
3,623,452	+		HGI48_RS16135	0.77	+0.1
3,623,452	+		HGI48_RS16135	0.77	-1.3
3,623,460	+		HGI48_RS16135	0.78	+0.2
3,623,460	+		HGI48_RS16135	0.78	+1.5
3,623,517	+		HGI48_RS16135	0.85	-0.5
3,623,517	+		HGI48_RS16135	0.85	-1.1
3,623,517	+		HGI48_RS16135	0.85	-0.3
3,623,517	+		HGI48_RS16135	0.85	+0.1
3,623,518	-		HGI48_RS16135	0.85	-1.1
3,623,518	-		HGI48_RS16135	0.85	+1.7
3,623,518	-		HGI48_RS16135	0.85	-0.7
3,623,518	-		HGI48_RS16135	0.85	-1.5
3,623,518	-		HGI48_RS16135	0.85	+0.2
3,623,518	-		HGI48_RS16135	0.85	-0.7
3,623,567	+				-0.7
3,623,567	+				+0.9
3,623,567	+				-0.5
3,623,568	-				-0.2
3,623,568	-				-0.1
3,623,568	-				-0.1
3,623,568	-				-0.3
3,623,568	-				+0.6
3,623,568	-				-0.1
3,623,604	+				-1.4
3,623,605	-				-0.3
3,623,605	-				+1.8
3,623,605	-				-0.3
3,623,605	-				+3.1
3,623,607	+				-0.7
3,623,746	-				+0.9
3,623,750	-				+0.7
3,623,750	-				-0.5
3,623,756	+				-0.1
3,623,756	+				+0.1