Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15525

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,488,948	+				-0.1
3,488,948	+		HGI48_RS15520	0.30	-0.1
3,488,948	+		HGI48_RS15520	0.30	+0.9
3,488,949	-		HGI48_RS15520	0.30	+0.2
3,488,949	-		HGI48_RS15520	0.30	-0.7
3,489,056	+		HGI48_RS15520	0.38	-1.1
3,489,057	-		HGI48_RS15520	0.38	-0.5
3,489,101	-		HGI48_RS15520	0.42	+0.7
3,489,131	+		HGI48_RS15520	0.44	-1.4
3,489,135	+		HGI48_RS15520	0.44	+0.7
3,489,135	+				+0.9
3,489,135	+		HGI48_RS15520	0.44	+0.9
3,489,143	+		HGI48_RS15520	0.45	+0.3
3,489,144	-				+0.3
3,489,170	+		HGI48_RS15520	0.47	+0.6
3,489,171	-		HGI48_RS15520	0.47	-0.1
3,489,176	+		HGI48_RS15520	0.47	+0.5
3,489,177	-		HGI48_RS15520	0.47	+0.6
3,489,177	-		HGI48_RS15520	0.47	-0.1
3,489,212	+		HGI48_RS15520	0.50	+0.0
3,489,212	+		HGI48_RS15520	0.50	-0.1
3,489,212	+		HGI48_RS15520	0.50	-0.1
3,489,212	+				+0.9
3,489,212	+		HGI48_RS15520	0.50	-0.0
3,489,213	-		HGI48_RS15520	0.50	-2.7
3,489,213	-		HGI48_RS15520	0.50	-1.0
3,489,242	+		HGI48_RS15520	0.52	-0.5
3,489,243	-		HGI48_RS15520	0.53	-0.7
3,489,243	-		HGI48_RS15520	0.53	-1.4
3,489,287	+		HGI48_RS15520	0.56	+0.3
3,489,288	-		HGI48_RS15520	0.56	-1.1
3,489,288	-				+1.9
3,489,293	+		HGI48_RS15520	0.56	-1.8
3,489,293	+		HGI48_RS15520	0.56	-1.1
3,489,293	+				-0.1
3,489,304	+		HGI48_RS15520	0.57	-0.5
3,489,304	+		HGI48_RS15520	0.57	-0.1
3,489,304	+				+1.3
3,489,304	+		HGI48_RS15520	0.57	-1.4
3,489,304	+		HGI48_RS15520	0.57	+0.0
3,489,305	-				+0.3
3,489,305	-		HGI48_RS15520	0.57	-0.4
3,489,357	+		HGI48_RS15520	0.61	-1.1
3,489,357	+		HGI48_RS15520	0.61	-1.4
3,489,358	-		HGI48_RS15520	0.61	-1.4
3,489,358	-		HGI48_RS15520	0.61	-0.1
3,489,358	-				+0.3
3,489,358	-		HGI48_RS15520	0.61	-1.7
3,489,392	-		HGI48_RS15520	0.64	-0.4
3,489,392	-		HGI48_RS15520	0.64	+1.0
3,489,392	-		HGI48_RS15520	0.64	-1.9
3,489,392	-		HGI48_RS15520	0.64	+0.7
3,489,406	-		HGI48_RS15520	0.65	-2.0
3,489,419	+		HGI48_RS15520	0.66	-0.5
3,489,420	-		HGI48_RS15520	0.66	+0.2
3,489,432	+				+2.5
3,489,433	-		HGI48_RS15520	0.67	-1.3
3,489,433	-		HGI48_RS15520	0.67	-1.1
3,489,450	+		HGI48_RS15520	0.68	-0.5
3,489,451	-		HGI48_RS15520	0.68	+0.9
3,489,462	+		HGI48_RS15520	0.69	-1.1
3,489,485	+		HGI48_RS15520	0.71	+2.1
3,489,485	+				+1.6
3,489,485	+		HGI48_RS15520	0.71	-0.3
3,489,485	+		HGI48_RS15520	0.71	-0.4
3,489,485	+				+0.9
3,489,485	+		HGI48_RS15520	0.71	-1.4
3,489,486	-		HGI48_RS15520	0.71	-1.7
3,489,486	-		HGI48_RS15520	0.71	+0.3
3,489,486	-		HGI48_RS15520	0.71	-0.3
3,489,486	-		HGI48_RS15520	0.71	-0.9
3,489,537	-				+0.3
3,489,548	+		HGI48_RS15520	0.76	-0.7
3,489,548	+		HGI48_RS15520	0.76	-0.5
3,489,550	+		HGI48_RS15520	0.76	-0.4
3,489,569	+		HGI48_RS15520	0.77	+1.2
3,489,587	+		HGI48_RS15520	0.79	+1.7
3,489,605	+				+1.5
3,489,605	+		HGI48_RS15520	0.80	-1.4
3,489,606	-		HGI48_RS15520	0.80	-2.1
3,489,636	+		HGI48_RS15520	0.82	+0.3
3,489,636	+		HGI48_RS15520	0.82	+0.0
3,489,637	-		HGI48_RS15520	0.82	+0.1
3,489,686	+		HGI48_RS15520	0.86	+0.1
3,489,687	-		HGI48_RS15520	0.86	-1.9
3,489,693	+		HGI48_RS15520	0.87	+0.6
3,489,694	-		HGI48_RS15520	0.87	-0.9
3,489,699	+		HGI48_RS15520	0.87	-1.9
3,489,726	+		HGI48_RS15520	0.89	-0.3
3,489,726	+		HGI48_RS15520	0.89	-0.3
3,489,727	-		HGI48_RS15520	0.89	+0.9
3,489,727	-		HGI48_RS15520	0.89	-1.1
3,489,734	-		HGI48_RS15520	0.90	-0.9
3,489,780	+				-0.7
3,489,828	+				-1.3
3,489,828	+				+1.0
3,489,828	+				-1.4
3,489,845	+				-0.7
3,489,848	+				+1.9
3,489,849	-				+1.5
3,489,849	-				+1.1
3,489,849	-				+1.2
3,489,909	+				-0.5
3,489,909	+				+0.6
3,489,909	+				+0.4
3,489,909	+				-0.4
3,489,910	-				+0.8
3,489,913	+				-1.2
3,489,914	-				-0.4
3,489,914	-				-1.4
3,489,939	+		HGI48_RS15525	0.12	+1.1
3,489,940	-		HGI48_RS15525	0.12	+0.1
3,489,940	-		HGI48_RS15525	0.12	-2.6
3,489,940	-		HGI48_RS15525	0.12	-0.8
3,489,940	-		HGI48_RS15525	0.12	+0.9
3,489,940	-		HGI48_RS15525	0.12	+0.4
3,489,940	-		HGI48_RS15525	0.12	+0.0
3,489,941	+		HGI48_RS15525	0.12	+0.7
3,489,941	+		HGI48_RS15525	0.12	+0.5
3,489,941	+		HGI48_RS15525	0.12	-1.9
3,489,941	+		HGI48_RS15525	0.12	-0.0
3,489,941	+		HGI48_RS15525	0.12	-1.7
3,489,941	+		HGI48_RS15525	0.12	+0.1
3,489,992	+		HGI48_RS15525	0.21	-2.3
3,489,992	+		HGI48_RS15525	0.21	-0.9
3,489,993	-		HGI48_RS15525	0.21	+0.4
3,489,993	-		HGI48_RS15525	0.21	-1.3
3,489,993	-		HGI48_RS15525	0.21	+0.5
3,489,998	+		HGI48_RS15525	0.22	+0.6
3,489,998	+		HGI48_RS15525	0.22	+0.7
3,489,998	+				+0.9
3,489,998	+		HGI48_RS15525	0.22	-1.7
3,489,998	+		HGI48_RS15525	0.22	-0.1
3,490,002	-		HGI48_RS15525	0.22	-0.3
3,490,078	+		HGI48_RS15525	0.36	+0.9
3,490,226	+		HGI48_RS15525	0.61	-0.1
3,490,226	+				-0.1
3,490,277	-		HGI48_RS15525	0.70	+0.9
3,490,353	+		HGI48_RS15525	0.83	+0.3
3,490,353	+		HGI48_RS15525	0.83	-1.4
3,490,353	+		HGI48_RS15525	0.83	+0.5
3,490,376	+		HGI48_RS15525	0.87	+1.1
3,490,400	+				-0.2
3,490,431	+				+0.3
3,490,432	-				-1.4
3,490,437	-				+0.1
3,490,438	+				+0.9
3,490,439	-				+1.9
3,490,485	+				+1.6
3,490,485	+				-0.1
3,490,485	+				+0.9
3,490,485	+				-1.1
3,490,485	+				+0.6
3,490,486	-				-1.7
3,490,489	-				+0.4
3,490,498	+				+0.2
3,490,527	+				-0.9
3,490,527	+				-0.1
3,490,527	+				+1.1
3,490,527	+				+0.1
3,490,527	+				-0.4
3,490,527	+				+1.8
3,490,527	-				-0.9
3,490,528	-				+1.1
3,490,531	+				-1.1
3,490,531	+				-0.9
3,490,532	-				+0.4
3,490,585	-				-0.4
3,490,644	-				-1.9
3,490,660	+				-0.9
3,490,660	+				-1.4
3,490,661	-				-0.1
3,490,661	-				-0.6
3,490,747	-				+1.6
3,490,747	-				-0.4
3,490,766	-				-0.1
3,490,815	-				-0.4
3,490,834	-				+0.9
3,490,846	+				-1.7
3,490,846	+				-0.1
3,490,846	+				-0.1
3,490,847	-				-0.3
3,490,847	-				+1.3
3,490,847	-				+0.1
3,490,847	-				-0.6
3,490,858	+				-0.1
3,490,859	-				-0.7
3,490,866	+				+0.9
3,490,866	+				+1.2
3,490,866	+				-1.0
3,490,867	-				+0.9
3,490,948	-				+2.2
3,490,948	-				-2.6
3,491,113	-		HGI48_RS15530	0.13	-0.1
3,491,181	-				+0.3
3,491,294	-		HGI48_RS15530	0.24	+0.5
3,491,305	+				-0.7