Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14795

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,331,450	+		HGI48_RS14790	0.15	-1.2
3,331,944	+		HGI48_RS14790	0.78	+0.5
3,332,021	+		HGI48_RS14790	0.88	+0.3
3,332,021	+		HGI48_RS14790	0.88	+0.8
3,332,021	+		HGI48_RS14790	0.88	-1.8
3,332,022	-		HGI48_RS14790	0.88	+0.4
3,332,059	+				+0.2
3,332,153	+				-0.8
3,332,236	-				-1.5
3,332,242	+				+0.8
3,332,243	-				-0.5
3,332,265	+				-0.4
3,332,265	+				-1.0
3,332,265	+				-0.8
3,332,265	+				-1.5
3,332,266	-				-1.0
3,332,266	-				-0.8
3,332,267	+				-1.0
3,332,268	-				+0.4
3,332,268	-				-1.2
3,332,294	+		HGI48_RS14795	0.10	-0.8
3,332,294	+		HGI48_RS14795	0.10	-0.5
3,332,295	-				+2.6
3,332,295	-		HGI48_RS14795	0.10	-0.9
3,332,352	+		HGI48_RS14795	0.15	+0.8
3,332,353	-		HGI48_RS14795	0.15	-0.1
3,332,353	-		HGI48_RS14795	0.15	+0.8
3,332,473	+		HGI48_RS14795	0.24	-0.5
3,332,474	-		HGI48_RS14795	0.24	-0.8
3,332,474	-		HGI48_RS14795	0.24	+0.1
3,332,474	-		HGI48_RS14795	0.24	-1.8
3,332,607	+		HGI48_RS14795	0.35	-1.2
3,332,607	+		HGI48_RS14795	0.35	-0.4
3,332,608	-		HGI48_RS14795	0.35	+0.3
3,332,608	-		HGI48_RS14795	0.35	-0.4
3,332,617	+		HGI48_RS14795	0.36	-0.5
3,332,648	+		HGI48_RS14795	0.38	-1.5
3,332,789	+		HGI48_RS14795	0.50	-0.2
3,332,801	-		HGI48_RS14795	0.51	-1.2
3,332,805	+				+0.2
3,332,805	+		HGI48_RS14795	0.51	+0.6
3,332,806	-		HGI48_RS14795	0.51	-1.1
3,332,908	+		HGI48_RS14795	0.59	-1.8
3,332,909	-		HGI48_RS14795	0.59	-1.0
3,332,930	+		HGI48_RS14795	0.61	+0.7
3,332,930	+		HGI48_RS14795	0.61	-0.9
3,332,931	-		HGI48_RS14795	0.61	-1.2
3,333,089	+		HGI48_RS14795	0.74	+0.1
3,333,089	+		HGI48_RS14795	0.74	+2.4
3,333,089	+		HGI48_RS14795	0.74	+0.6
3,333,090	-		HGI48_RS14795	0.74	+0.3
3,333,183	-				+1.8
3,333,183	-		HGI48_RS14795	0.81	-1.8
3,333,227	+		HGI48_RS14795	0.85	-0.8
3,333,227	+		HGI48_RS14795	0.85	-0.6
3,333,227	+				+0.8
3,333,227	+		HGI48_RS14795	0.85	+0.0
3,333,227	+		HGI48_RS14795	0.85	-1.2
3,333,227	+		HGI48_RS14795	0.85	+0.0
3,333,227	+		HGI48_RS14795	0.85	+0.4
3,333,227	+		HGI48_RS14795	0.85	+0.1
3,333,228	-		HGI48_RS14795	0.85	-2.0
3,333,228	-		HGI48_RS14795	0.85	+0.5
3,333,228	-		HGI48_RS14795	0.85	-0.8
3,333,228	-		HGI48_RS14795	0.85	+0.8
3,333,250	+				+0.8
3,333,250	+		HGI48_RS14795	0.86	-0.2
3,333,251	-		HGI48_RS14795	0.87	-1.2
3,333,251	-		HGI48_RS14795	0.87	+1.4
3,333,251	-				+1.8
3,333,407	+				-0.8
3,333,407	+				-1.5
3,333,408	-				-1.8
3,333,423	+				-1.2
3,333,424	-				-0.4
3,333,424	-				-0.2
3,333,457	+				+0.3
3,333,458	-				+0.4
3,333,460	+				-0.1
3,333,460	+				-2.4
3,333,487	+				-0.4
3,333,487	+				+0.5
3,333,488	-				+0.6
3,333,488	-				-3.0
3,333,488	-				+1.0
3,333,488	-				-0.5
3,333,496	+				-0.5
3,333,496	+				-0.6
3,333,497	-				+1.2
3,333,497	-				+0.4
3,333,522	-		HGI48_RS14800	0.12	+0.3
3,333,601	-		HGI48_RS14800	0.20	+0.3
3,333,674	+		HGI48_RS14800	0.28	-1.5
3,333,674	+		HGI48_RS14800	0.28	+0.5
3,333,674	+		HGI48_RS14800	0.28	+0.5
3,333,674	+		HGI48_RS14800	0.28	+0.4
3,333,675	-		HGI48_RS14800	0.28	-0.2
3,333,675	-		HGI48_RS14800	0.28	-1.9
3,333,679	-		HGI48_RS14800	0.28	-0.2
3,333,679	-		HGI48_RS14800	0.28	-0.1
3,333,679	-		HGI48_RS14800	0.28	-1.1
3,333,679	-		HGI48_RS14800	0.28	-0.8
3,333,752	-		HGI48_RS14800	0.36	-1.2
3,333,774	+		HGI48_RS14800	0.39	-1.5
3,333,775	-		HGI48_RS14800	0.39	+0.4
3,333,834	+		HGI48_RS14800	0.45	+0.7
3,333,835	-		HGI48_RS14800	0.45	-0.6
3,333,835	-		HGI48_RS14800	0.45	-1.5
3,333,858	+		HGI48_RS14800	0.48	-1.2
3,333,858	+		HGI48_RS14800	0.48	-0.4
3,333,858	+		HGI48_RS14800	0.48	-1.2
3,333,858	+		HGI48_RS14800	0.48	+0.2
3,333,859	-		HGI48_RS14800	0.48	+0.8
3,333,862	-		HGI48_RS14800	0.48	+0.0
3,333,862	-		HGI48_RS14800	0.48	-0.2
3,333,877	-		HGI48_RS14800	0.50	-1.5
3,333,883	+		HGI48_RS14800	0.50	-2.0
3,333,933	+				+0.2
3,333,933	+				+1.2
3,333,933	+		HGI48_RS14800	0.56	-0.8
3,333,933	+		HGI48_RS14800	0.56	+0.2
3,333,959	+				+1.6
3,333,960	-		HGI48_RS14800	0.59	-0.4
3,334,011	+		HGI48_RS14800	0.64	+0.5
3,334,011	+		HGI48_RS14800	0.64	+0.8
3,334,011	+		HGI48_RS14800	0.64	-1.1
3,334,012	-		HGI48_RS14800	0.64	-0.5
3,334,026	-				-0.8
3,334,122	+		HGI48_RS14800	0.76	-0.2
3,334,122	+		HGI48_RS14800	0.76	+0.8
3,334,170	+		HGI48_RS14800	0.81	-0.5
3,334,170	+		HGI48_RS14800	0.81	-2.0
3,334,170	+		HGI48_RS14800	0.81	+0.4
3,334,170	+		HGI48_RS14800	0.81	-0.6
3,334,171	-		HGI48_RS14800	0.82	+0.5
3,334,171	-		HGI48_RS14800	0.82	-0.6
3,334,171	-		HGI48_RS14800	0.82	+0.1
3,334,171	-		HGI48_RS14800	0.82	+0.8
3,334,172	+		HGI48_RS14800	0.82	-1.5
3,334,172	+		HGI48_RS14800	0.82	-0.8
3,334,172	+		HGI48_RS14800	0.82	+1.4
3,334,172	+		HGI48_RS14800	0.82	-0.2
3,334,172	-		HGI48_RS14800	0.82	+0.2
3,334,173	-		HGI48_RS14800	0.82	-1.2
3,334,173	-		HGI48_RS14800	0.82	+1.0
3,334,173	-		HGI48_RS14800	0.82	-0.2
3,334,205	+		HGI48_RS14800	0.85	-0.8
3,334,205	+				+1.2
3,334,258	+				+0.1
3,334,276	-				+0.2
3,334,331	+				-0.5
3,334,332	-				+1.6
3,334,335	+				-0.2
3,334,335	+				-0.6
3,334,403	-				-0.4
3,334,403	-				+0.6