Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS09275 and HGI48_RS09280 are separated by 131 nucleotides HGI48_RS09280 and HGI48_RS09285 are separated by 104 nucleotides
HGI48_RS09275: HGI48_RS09275 - deoxyribonuclease IV, at 1,991,125 to 1,992,000
_RS09275
HGI48_RS09280: HGI48_RS09280 - YeiH family putative sulfate export transporter, at 1,992,132 to 1,993,214
_RS09280
HGI48_RS09285: HGI48_RS09285 - LysR family transcriptional regulator, at 1,993,319 to 1,994,197
_RS09285
Position (kb) 1992
1993
1994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1991.259 kb on + strand, within HGI48_RS09275 at 1991.259 kb on + strand, within HGI48_RS09275 at 1991.259 kb on + strand, within HGI48_RS09275 at 1991.259 kb on + strand, within HGI48_RS09275 at 1991.262 kb on + strand, within HGI48_RS09275 at 1991.262 kb on + strand, within HGI48_RS09275 at 1991.262 kb on + strand, within HGI48_RS09275 at 1991.262 kb on + strand, within HGI48_RS09275 at 1991.263 kb on - strand, within HGI48_RS09275 at 1991.263 kb on - strand, within HGI48_RS09275 at 1991.263 kb on - strand, within HGI48_RS09275 at 1991.263 kb on - strand, within HGI48_RS09275 at 1991.263 kb on - strand, within HGI48_RS09275 at 1991.264 kb on + strand at 1991.264 kb on + strand, within HGI48_RS09275 at 1991.264 kb on + strand, within HGI48_RS09275 at 1991.264 kb on + strand, within HGI48_RS09275 at 1991.264 kb on + strand, within HGI48_RS09275 at 1991.265 kb on - strand at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.265 kb on - strand, within HGI48_RS09275 at 1991.613 kb on + strand, within HGI48_RS09275 at 1991.613 kb on + strand, within HGI48_RS09275 at 1991.613 kb on + strand, within HGI48_RS09275 at 1991.786 kb on + strand, within HGI48_RS09275 at 1991.786 kb on + strand, within HGI48_RS09275 at 1991.786 kb on + strand, within HGI48_RS09275 at 1991.787 kb on - strand, within HGI48_RS09275 at 1991.787 kb on - strand, within HGI48_RS09275 at 1991.787 kb on - strand, within HGI48_RS09275 at 1991.825 kb on + strand, within HGI48_RS09275 at 1991.825 kb on + strand, within HGI48_RS09275 at 1991.825 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.993 kb on + strand at 1991.994 kb on - strand at 1991.994 kb on - strand at 1991.994 kb on - strand at 1992.015 kb on + strand at 1992.016 kb on - strand at 1992.028 kb on + strand at 1992.029 kb on - strand at 1992.054 kb on + strand at 1992.054 kb on + strand at 1992.072 kb on - strand at 1992.072 kb on - strand at 1992.088 kb on + strand at 1992.089 kb on - strand at 1992.105 kb on + strand at 1992.105 kb on + strand at 1992.105 kb on + strand at 1992.106 kb on - strand at 1992.106 kb on - strand at 1992.106 kb on - strand at 1992.106 kb on - strand at 1992.192 kb on - strand at 1992.612 kb on + strand at 1992.612 kb on + strand, within HGI48_RS09280 at 1992.613 kb on - strand, within HGI48_RS09280 at 1992.613 kb on - strand, within HGI48_RS09280 at 1992.623 kb on + strand, within HGI48_RS09280 at 1992.625 kb on + strand, within HGI48_RS09280 at 1992.632 kb on + strand, within HGI48_RS09280 at 1992.643 kb on + strand, within HGI48_RS09280 at 1992.644 kb on - strand, within HGI48_RS09280 at 1992.644 kb on - strand, within HGI48_RS09280 at 1992.644 kb on - strand, within HGI48_RS09280 at 1992.644 kb on - strand, within HGI48_RS09280 at 1992.656 kb on - strand, within HGI48_RS09280 at 1992.656 kb on - strand, within HGI48_RS09280 at 1992.854 kb on + strand, within HGI48_RS09280 at 1992.934 kb on + strand, within HGI48_RS09280 at 1993.104 kb on + strand, within HGI48_RS09280 at 1993.104 kb on + strand, within HGI48_RS09280 at 1993.104 kb on + strand, within HGI48_RS09280 at 1993.105 kb on - strand, within HGI48_RS09280 at 1993.105 kb on - strand, within HGI48_RS09280 at 1993.105 kb on - strand at 1993.107 kb on + strand at 1993.108 kb on - strand at 1993.185 kb on + strand at 1993.186 kb on - strand at 1993.248 kb on - strand at 1993.248 kb on - strand at 1993.287 kb on - strand at 1993.289 kb on - strand at 1993.324 kb on + strand at 1993.324 kb on + strand at 1993.325 kb on - strand at 1993.325 kb on - strand at 1993.325 kb on - strand at 1993.327 kb on + strand at 1993.327 kb on + strand at 1993.327 kb on + strand at 1993.327 kb on + strand at 1993.328 kb on - strand at 1993.328 kb on - strand at 1993.328 kb on - strand at 1993.332 kb on + strand at 1993.332 kb on + strand at 1993.333 kb on - strand at 1993.459 kb on - strand, within HGI48_RS09285 at 1993.459 kb on - strand, within HGI48_RS09285 at 1993.518 kb on - strand, within HGI48_RS09285 at 1993.518 kb on - strand, within HGI48_RS09285 at 1993.598 kb on + strand, within HGI48_RS09285 at 1993.598 kb on + strand, within HGI48_RS09285 at 1993.622 kb on + strand, within HGI48_RS09285 at 1993.622 kb on + strand, within HGI48_RS09285 at 1993.685 kb on + strand, within HGI48_RS09285 at 1993.685 kb on + strand, within HGI48_RS09285 at 1993.685 kb on + strand, within HGI48_RS09285 at 1993.685 kb on + strand, within HGI48_RS09285 at 1993.686 kb on - strand, within HGI48_RS09285 at 1993.697 kb on - strand, within HGI48_RS09285 at 1994.107 kb on + strand, within HGI48_RS09285 at 1994.115 kb on - strand at 1994.192 kb on - strand at 1994.195 kb on + strand at 1994.195 kb on + strand at 1994.196 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,991,259 + HGI48_RS09275 0.15 -0.4 1,991,259 + HGI48_RS09275 0.15 -0.1 1,991,259 + HGI48_RS09275 0.15 -1.4 1,991,259 + HGI48_RS09275 0.15 +0.3 1,991,262 + HGI48_RS09275 0.16 -0.6 1,991,262 + HGI48_RS09275 0.16 -0.2 1,991,262 + HGI48_RS09275 0.16 +2.3 1,991,262 + HGI48_RS09275 0.16 +0.6 1,991,263 - HGI48_RS09275 0.16 -2.5 1,991,263 - HGI48_RS09275 0.16 -0.0 1,991,263 - HGI48_RS09275 0.16 +0.4 1,991,263 - HGI48_RS09275 0.16 +0.3 1,991,263 - HGI48_RS09275 0.16 -0.4 1,991,264 + +0.6 1,991,264 + HGI48_RS09275 0.16 -0.6 1,991,264 + HGI48_RS09275 0.16 -1.0 1,991,264 + HGI48_RS09275 0.16 +1.0 1,991,264 + HGI48_RS09275 0.16 +1.2 1,991,265 - +1.4 1,991,265 - HGI48_RS09275 0.16 -1.7 1,991,265 - HGI48_RS09275 0.16 +0.2 1,991,265 - HGI48_RS09275 0.16 +0.4 1,991,265 - HGI48_RS09275 0.16 +0.4 1,991,265 - HGI48_RS09275 0.16 +0.6 1,991,265 - HGI48_RS09275 0.16 -2.2 1,991,265 - HGI48_RS09275 0.16 -0.6 1,991,265 - HGI48_RS09275 0.16 -0.3 1,991,265 - HGI48_RS09275 0.16 -0.4 1,991,613 + HGI48_RS09275 0.56 -0.4 1,991,613 + HGI48_RS09275 0.56 -0.8 1,991,613 + HGI48_RS09275 0.56 +0.1 1,991,786 + HGI48_RS09275 0.75 +0.6 1,991,786 + HGI48_RS09275 0.75 -1.7 1,991,786 + HGI48_RS09275 0.75 -0.4 1,991,787 - HGI48_RS09275 0.76 +0.4 1,991,787 - HGI48_RS09275 0.76 +0.0 1,991,787 - HGI48_RS09275 0.76 +1.1 1,991,825 + HGI48_RS09275 0.80 -1.0 1,991,825 + HGI48_RS09275 0.80 +0.1 1,991,825 + +0.0 1,991,993 + -0.2 1,991,993 + +0.4 1,991,993 + -1.8 1,991,993 + +1.0 1,991,993 + +0.3 1,991,993 + -1.2 1,991,993 + +0.0 1,991,993 + -1.7 1,991,994 - -0.4 1,991,994 - +0.3 1,991,994 - -0.4 1,992,015 + +1.6 1,992,016 - -0.7 1,992,028 + -0.7 1,992,029 - +0.6 1,992,054 + -0.4 1,992,054 + -0.2 1,992,072 - -1.4 1,992,072 - -0.2 1,992,088 + -0.1 1,992,089 - +2.6 1,992,105 + -0.7 1,992,105 + +0.0 1,992,105 + +0.4 1,992,106 - -1.7 1,992,106 - -0.7 1,992,106 - -0.2 1,992,106 - +1.6 1,992,192 - -1.4 1,992,612 + -1.0 1,992,612 + HGI48_RS09280 0.44 +1.0 1,992,613 - HGI48_RS09280 0.44 -0.7 1,992,613 - HGI48_RS09280 0.44 -1.7 1,992,623 + HGI48_RS09280 0.45 -0.6 1,992,625 + HGI48_RS09280 0.46 +0.3 1,992,632 + HGI48_RS09280 0.46 +1.6 1,992,643 + HGI48_RS09280 0.47 -0.0 1,992,644 - HGI48_RS09280 0.47 -2.0 1,992,644 - HGI48_RS09280 0.47 -0.4 1,992,644 - HGI48_RS09280 0.47 -0.5 1,992,644 - HGI48_RS09280 0.47 -0.5 1,992,656 - HGI48_RS09280 0.48 +0.6 1,992,656 - HGI48_RS09280 0.48 +0.8 1,992,854 + HGI48_RS09280 0.67 +1.0 1,992,934 + HGI48_RS09280 0.74 -1.5 1,993,104 + HGI48_RS09280 0.90 -1.7 1,993,104 + HGI48_RS09280 0.90 +0.9 1,993,104 + HGI48_RS09280 0.90 +1.0 1,993,105 - HGI48_RS09280 0.90 -0.1 1,993,105 - HGI48_RS09280 0.90 -1.0 1,993,105 - -1.0 1,993,107 + -1.2 1,993,108 - +1.2 1,993,185 + -2.5 1,993,186 - +0.2 1,993,248 - +0.6 1,993,248 - +1.3 1,993,287 - -1.2 1,993,289 - -3.0 1,993,324 + +0.6 1,993,324 + +0.2 1,993,325 - -0.2 1,993,325 - -0.9 1,993,325 - -0.5 1,993,327 + -0.5 1,993,327 + -0.3 1,993,327 + +0.2 1,993,327 + +1.8 1,993,328 - -0.4 1,993,328 - -1.0 1,993,328 - -1.7 1,993,332 + -1.9 1,993,332 + +0.6 1,993,333 - -0.4 1,993,459 - HGI48_RS09285 0.16 -0.5 1,993,459 - HGI48_RS09285 0.16 +0.5 1,993,518 - HGI48_RS09285 0.23 -1.0 1,993,518 - HGI48_RS09285 0.23 +0.1 1,993,598 + HGI48_RS09285 0.32 +0.0 1,993,598 + HGI48_RS09285 0.32 -0.2 1,993,622 + HGI48_RS09285 0.34 -1.4 1,993,622 + HGI48_RS09285 0.34 -0.3 1,993,685 + HGI48_RS09285 0.42 -2.0 1,993,685 + HGI48_RS09285 0.42 +0.0 1,993,685 + HGI48_RS09285 0.42 -1.0 1,993,685 + HGI48_RS09285 0.42 +2.0 1,993,686 - HGI48_RS09285 0.42 +0.1 1,993,697 - HGI48_RS09285 0.43 -0.2 1,994,107 + HGI48_RS09285 0.90 -0.7 1,994,115 - +1.0 1,994,192 - -0.4 1,994,195 + -1.4 1,994,195 + -0.2 1,994,196 - +1.2
Or see this region's nucleotide sequence