Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS08135 and HGI48_RS08140 are separated by 92 nucleotides HGI48_RS08140 and HGI48_RS08145 are separated by 205 nucleotides HGI48_RS08145 and HGI48_RS08150 are separated by 142 nucleotides
HGI48_RS08135: HGI48_RS08135 - DHA2 family efflux MFS transporter permease subunit, at 1,747,981 to 1,749,507
_RS08135
HGI48_RS08140: HGI48_RS08140 - helix-turn-helix domain-containing protein, at 1,749,600 to 1,750,499
_RS08140
HGI48_RS08145: HGI48_RS08145 - DUF2501 domain-containing protein, at 1,750,705 to 1,751,190
_RS08145
HGI48_RS08150: HGI48_RS08150 - flavin reductase family protein, at 1,751,333 to 1,751,923
_RS08150
Position (kb) 1749
1750
1751 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1748.728 kb on - strand, within HGI48_RS08135 at 1748.728 kb on - strand, within HGI48_RS08135 at 1748.940 kb on + strand, within HGI48_RS08135 at 1748.978 kb on + strand, within HGI48_RS08135 at 1748.979 kb on - strand, within HGI48_RS08135 at 1748.979 kb on - strand, within HGI48_RS08135 at 1748.979 kb on - strand, within HGI48_RS08135 at 1748.979 kb on - strand, within HGI48_RS08135 at 1749.008 kb on + strand at 1749.077 kb on + strand at 1749.078 kb on - strand, within HGI48_RS08135 at 1749.078 kb on - strand, within HGI48_RS08135 at 1749.078 kb on - strand, within HGI48_RS08135 at 1749.088 kb on - strand, within HGI48_RS08135 at 1749.088 kb on - strand at 1749.256 kb on + strand, within HGI48_RS08135 at 1749.256 kb on + strand, within HGI48_RS08135 at 1749.256 kb on + strand, within HGI48_RS08135 at 1749.257 kb on - strand, within HGI48_RS08135 at 1749.293 kb on - strand, within HGI48_RS08135 at 1749.313 kb on + strand, within HGI48_RS08135 at 1749.313 kb on + strand, within HGI48_RS08135 at 1749.406 kb on + strand at 1749.477 kb on + strand at 1749.477 kb on + strand at 1749.477 kb on + strand at 1749.505 kb on + strand at 1749.506 kb on - strand at 1749.506 kb on - strand at 1749.527 kb on - strand at 1749.527 kb on - strand at 1749.565 kb on + strand at 1749.565 kb on + strand at 1749.565 kb on + strand at 1749.565 kb on + strand at 1749.565 kb on + strand at 1749.566 kb on - strand at 1749.566 kb on - strand at 1749.566 kb on - strand at 1749.566 kb on - strand at 1749.623 kb on + strand at 1749.624 kb on - strand at 1749.624 kb on - strand at 1749.739 kb on + strand, within HGI48_RS08140 at 1749.739 kb on + strand, within HGI48_RS08140 at 1749.774 kb on + strand, within HGI48_RS08140 at 1749.775 kb on - strand, within HGI48_RS08140 at 1749.775 kb on - strand, within HGI48_RS08140 at 1749.776 kb on + strand, within HGI48_RS08140 at 1749.776 kb on + strand, within HGI48_RS08140 at 1749.844 kb on + strand, within HGI48_RS08140 at 1749.851 kb on - strand, within HGI48_RS08140 at 1749.882 kb on - strand, within HGI48_RS08140 at 1749.888 kb on - strand, within HGI48_RS08140 at 1749.894 kb on - strand, within HGI48_RS08140 at 1749.925 kb on - strand at 1749.937 kb on + strand, within HGI48_RS08140 at 1749.938 kb on - strand, within HGI48_RS08140 at 1750.034 kb on + strand, within HGI48_RS08140 at 1750.034 kb on + strand, within HGI48_RS08140 at 1750.034 kb on + strand, within HGI48_RS08140 at 1750.034 kb on + strand, within HGI48_RS08140 at 1750.034 kb on + strand, within HGI48_RS08140 at 1750.034 kb on + strand, within HGI48_RS08140 at 1750.035 kb on - strand, within HGI48_RS08140 at 1750.035 kb on - strand, within HGI48_RS08140 at 1750.035 kb on - strand, within HGI48_RS08140 at 1750.053 kb on - strand, within HGI48_RS08140 at 1750.061 kb on + strand, within HGI48_RS08140 at 1750.103 kb on - strand, within HGI48_RS08140 at 1750.133 kb on + strand, within HGI48_RS08140 at 1750.133 kb on + strand, within HGI48_RS08140 at 1750.151 kb on + strand, within HGI48_RS08140 at 1750.151 kb on + strand, within HGI48_RS08140 at 1750.151 kb on + strand, within HGI48_RS08140 at 1750.151 kb on + strand at 1750.220 kb on + strand at 1750.220 kb on + strand, within HGI48_RS08140 at 1750.221 kb on - strand, within HGI48_RS08140 at 1750.224 kb on - strand, within HGI48_RS08140 at 1750.239 kb on + strand, within HGI48_RS08140 at 1750.332 kb on + strand, within HGI48_RS08140 at 1750.333 kb on - strand, within HGI48_RS08140 at 1750.357 kb on - strand, within HGI48_RS08140 at 1750.357 kb on - strand, within HGI48_RS08140 at 1750.365 kb on - strand, within HGI48_RS08140 at 1750.365 kb on - strand, within HGI48_RS08140 at 1750.383 kb on + strand at 1750.384 kb on - strand, within HGI48_RS08140 at 1750.385 kb on + strand, within HGI48_RS08140 at 1750.448 kb on - strand at 1750.474 kb on - strand at 1750.474 kb on - strand at 1750.474 kb on - strand at 1750.474 kb on - strand at 1750.476 kb on + strand at 1750.476 kb on + strand at 1750.476 kb on + strand at 1750.476 kb on + strand at 1750.477 kb on - strand at 1750.477 kb on - strand at 1750.477 kb on - strand at 1750.477 kb on - strand at 1750.477 kb on - strand at 1750.478 kb on + strand at 1750.478 kb on + strand at 1750.479 kb on - strand at 1750.479 kb on - strand at 1750.565 kb on + strand at 1750.565 kb on + strand at 1750.566 kb on - strand at 1750.566 kb on - strand at 1750.589 kb on + strand at 1750.662 kb on + strand at 1750.663 kb on - strand at 1750.663 kb on - strand at 1750.664 kb on + strand at 1750.664 kb on + strand at 1750.665 kb on - strand at 1750.665 kb on - strand at 1750.665 kb on - strand at 1750.695 kb on + strand at 1750.695 kb on + strand at 1750.704 kb on + strand at 1750.712 kb on + strand at 1750.768 kb on + strand at 1750.768 kb on + strand, within HGI48_RS08145 at 1750.768 kb on + strand, within HGI48_RS08145 at 1750.768 kb on + strand at 1750.768 kb on + strand, within HGI48_RS08145 at 1750.769 kb on - strand, within HGI48_RS08145 at 1750.873 kb on - strand at 1750.873 kb on - strand, within HGI48_RS08145 at 1750.933 kb on + strand, within HGI48_RS08145 at 1750.933 kb on + strand, within HGI48_RS08145 at 1750.933 kb on + strand, within HGI48_RS08145 at 1750.934 kb on - strand, within HGI48_RS08145 at 1750.934 kb on - strand, within HGI48_RS08145 at 1750.934 kb on - strand, within HGI48_RS08145 at 1750.999 kb on - strand, within HGI48_RS08145 at 1751.044 kb on + strand, within HGI48_RS08145 at 1751.045 kb on - strand, within HGI48_RS08145 at 1751.045 kb on - strand, within HGI48_RS08145 at 1751.045 kb on - strand, within HGI48_RS08145 at 1751.045 kb on - strand, within HGI48_RS08145 at 1751.046 kb on + strand, within HGI48_RS08145 at 1751.046 kb on + strand, within HGI48_RS08145 at 1751.047 kb on - strand, within HGI48_RS08145 at 1751.047 kb on - strand, within HGI48_RS08145 at 1751.047 kb on - strand, within HGI48_RS08145 at 1751.073 kb on + strand, within HGI48_RS08145 at 1751.074 kb on - strand, within HGI48_RS08145 at 1751.074 kb on - strand, within HGI48_RS08145 at 1751.104 kb on - strand, within HGI48_RS08145 at 1751.116 kb on - strand, within HGI48_RS08145 at 1751.162 kb on + strand at 1751.163 kb on - strand at 1751.163 kb on - strand at 1751.260 kb on - strand at 1751.301 kb on + strand at 1751.302 kb on - strand at 1751.347 kb on + strand at 1751.399 kb on + strand at 1751.447 kb on + strand, within HGI48_RS08150 at 1751.447 kb on + strand, within HGI48_RS08150 at 1751.447 kb on + strand, within HGI48_RS08150
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,748,728 - HGI48_RS08135 0.49 -1.6 1,748,728 - HGI48_RS08135 0.49 +0.2 1,748,940 + HGI48_RS08135 0.63 -2.1 1,748,978 + HGI48_RS08135 0.65 -0.1 1,748,979 - HGI48_RS08135 0.65 -0.9 1,748,979 - HGI48_RS08135 0.65 +0.6 1,748,979 - HGI48_RS08135 0.65 +0.5 1,748,979 - HGI48_RS08135 0.65 -0.9 1,749,008 + +0.1 1,749,077 + +1.7 1,749,078 - HGI48_RS08135 0.72 +0.9 1,749,078 - HGI48_RS08135 0.72 -1.1 1,749,078 - HGI48_RS08135 0.72 +0.2 1,749,088 - HGI48_RS08135 0.72 +0.7 1,749,088 - +2.3 1,749,256 + HGI48_RS08135 0.83 -1.6 1,749,256 + HGI48_RS08135 0.83 +0.3 1,749,256 + HGI48_RS08135 0.83 -1.6 1,749,257 - HGI48_RS08135 0.84 +0.3 1,749,293 - HGI48_RS08135 0.86 -1.3 1,749,313 + HGI48_RS08135 0.87 +0.3 1,749,313 + HGI48_RS08135 0.87 -0.6 1,749,406 + -0.2 1,749,477 + -0.3 1,749,477 + -1.5 1,749,477 + -1.3 1,749,505 + +1.1 1,749,506 - -1.6 1,749,506 - -0.0 1,749,527 - -0.9 1,749,527 - -1.0 1,749,565 + -0.1 1,749,565 + +1.4 1,749,565 + -0.0 1,749,565 + -0.4 1,749,565 + +0.4 1,749,566 - -0.6 1,749,566 - +0.7 1,749,566 - -0.7 1,749,566 - +0.1 1,749,623 + +0.3 1,749,624 - +0.4 1,749,624 - -1.1 1,749,739 + HGI48_RS08140 0.15 +1.4 1,749,739 + HGI48_RS08140 0.15 -0.6 1,749,774 + HGI48_RS08140 0.19 -1.3 1,749,775 - HGI48_RS08140 0.19 -0.7 1,749,775 - HGI48_RS08140 0.19 -0.6 1,749,776 + HGI48_RS08140 0.20 -1.3 1,749,776 + HGI48_RS08140 0.20 +0.2 1,749,844 + HGI48_RS08140 0.27 -1.2 1,749,851 - HGI48_RS08140 0.28 +1.0 1,749,882 - HGI48_RS08140 0.31 -1.4 1,749,888 - HGI48_RS08140 0.32 +0.1 1,749,894 - HGI48_RS08140 0.33 -2.6 1,749,925 - +0.1 1,749,937 + HGI48_RS08140 0.37 -2.1 1,749,938 - HGI48_RS08140 0.38 -1.3 1,750,034 + HGI48_RS08140 0.48 -0.3 1,750,034 + HGI48_RS08140 0.48 +1.1 1,750,034 + HGI48_RS08140 0.48 -0.7 1,750,034 + HGI48_RS08140 0.48 +0.7 1,750,034 + HGI48_RS08140 0.48 -1.9 1,750,034 + HGI48_RS08140 0.48 +1.2 1,750,035 - HGI48_RS08140 0.48 -0.2 1,750,035 - HGI48_RS08140 0.48 -0.3 1,750,035 - HGI48_RS08140 0.48 -0.3 1,750,053 - HGI48_RS08140 0.50 -2.0 1,750,061 + HGI48_RS08140 0.51 -1.3 1,750,103 - HGI48_RS08140 0.56 +0.2 1,750,133 + HGI48_RS08140 0.59 +0.2 1,750,133 + HGI48_RS08140 0.59 +1.0 1,750,151 + HGI48_RS08140 0.61 +0.9 1,750,151 + HGI48_RS08140 0.61 +0.1 1,750,151 + HGI48_RS08140 0.61 -0.6 1,750,151 + +0.1 1,750,220 + -0.9 1,750,220 + HGI48_RS08140 0.69 -0.6 1,750,221 - HGI48_RS08140 0.69 +0.4 1,750,224 - HGI48_RS08140 0.69 -1.1 1,750,239 + HGI48_RS08140 0.71 -0.0 1,750,332 + HGI48_RS08140 0.81 -0.7 1,750,333 - HGI48_RS08140 0.81 -0.3 1,750,357 - HGI48_RS08140 0.84 -0.3 1,750,357 - HGI48_RS08140 0.84 -0.5 1,750,365 - HGI48_RS08140 0.85 -1.1 1,750,365 - HGI48_RS08140 0.85 +0.4 1,750,383 + +1.1 1,750,384 - HGI48_RS08140 0.87 +0.2 1,750,385 + HGI48_RS08140 0.87 +0.4 1,750,448 - -0.1 1,750,474 - +0.7 1,750,474 - +0.3 1,750,474 - +1.1 1,750,474 - +0.4 1,750,476 + -0.3 1,750,476 + -1.6 1,750,476 + -1.6 1,750,476 + +0.3 1,750,477 - -0.8 1,750,477 - +1.0 1,750,477 - -0.3 1,750,477 - +0.5 1,750,477 - -0.3 1,750,478 + -1.9 1,750,478 + -0.3 1,750,479 - +0.0 1,750,479 - +0.1 1,750,565 + +0.1 1,750,565 + +0.2 1,750,566 - -0.9 1,750,566 - -2.1 1,750,589 + +0.5 1,750,662 + -0.6 1,750,663 - +0.7 1,750,663 - +0.2 1,750,664 + +1.0 1,750,664 + +1.9 1,750,665 - -1.6 1,750,665 - -2.5 1,750,665 - +0.5 1,750,695 + +0.1 1,750,695 + +1.4 1,750,704 + -1.6 1,750,712 + -1.6 1,750,768 + -0.9 1,750,768 + HGI48_RS08145 0.13 -0.3 1,750,768 + HGI48_RS08145 0.13 -0.2 1,750,768 + +1.4 1,750,768 + HGI48_RS08145 0.13 -1.6 1,750,769 - HGI48_RS08145 0.13 +1.1 1,750,873 - -0.3 1,750,873 - HGI48_RS08145 0.35 -1.9 1,750,933 + HGI48_RS08145 0.47 -1.1 1,750,933 + HGI48_RS08145 0.47 +0.4 1,750,933 + HGI48_RS08145 0.47 -0.3 1,750,934 - HGI48_RS08145 0.47 +0.7 1,750,934 - HGI48_RS08145 0.47 +0.8 1,750,934 - HGI48_RS08145 0.47 +0.4 1,750,999 - HGI48_RS08145 0.60 -0.6 1,751,044 + HGI48_RS08145 0.70 -0.4 1,751,045 - HGI48_RS08145 0.70 +0.5 1,751,045 - HGI48_RS08145 0.70 +1.0 1,751,045 - HGI48_RS08145 0.70 -0.8 1,751,045 - HGI48_RS08145 0.70 +0.7 1,751,046 + HGI48_RS08145 0.70 -1.3 1,751,046 + HGI48_RS08145 0.70 -0.1 1,751,047 - HGI48_RS08145 0.70 -2.1 1,751,047 - HGI48_RS08145 0.70 -1.3 1,751,047 - HGI48_RS08145 0.70 +0.9 1,751,073 + HGI48_RS08145 0.76 -1.7 1,751,074 - HGI48_RS08145 0.76 +0.4 1,751,074 - HGI48_RS08145 0.76 +1.1 1,751,104 - HGI48_RS08145 0.82 +0.3 1,751,116 - HGI48_RS08145 0.85 +0.3 1,751,162 + -1.1 1,751,163 - -0.2 1,751,163 - +0.7 1,751,260 - +0.2 1,751,301 + +0.9 1,751,302 - +1.0 1,751,347 + -0.6 1,751,399 + +0.1 1,751,447 + HGI48_RS08150 0.19 +0.4 1,751,447 + HGI48_RS08150 0.19 +0.3 1,751,447 + HGI48_RS08150 0.19 +1.0
Or see this region's nucleotide sequence