Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05870

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,240,163	+		HGI48_RS05865	0.76	-0.1
1,240,164	-		HGI48_RS05865	0.76	-1.7
1,240,164	-		HGI48_RS05865	0.76	-0.1
1,240,208	+		HGI48_RS05865	0.79	-0.4
1,240,209	-		HGI48_RS05865	0.79	+0.3
1,240,283	+		HGI48_RS05865	0.83	-0.3
1,240,283	+				+1.5
1,240,376	+		HGI48_RS05865	0.89	-0.1
1,240,387	+		HGI48_RS05865	0.90	-0.4
1,240,387	+		HGI48_RS05865	0.90	+0.5
1,240,448	+				+0.3
1,240,448	+				-2.1
1,240,448	+				-0.2
1,240,449	-				-0.9
1,240,449	-				-0.7
1,240,490	+				-1.7
1,240,491	-				-1.1
1,240,491	-				+1.9
1,240,550	+				+0.1
1,240,556	+				+0.2
1,240,556	+				+0.5
1,240,557	-				-0.7
1,240,567	+				+0.2
1,240,567	+				-3.0
1,240,567	+				-1.5
1,240,636	+				-1.5
1,240,636	+				+1.3
1,240,636	+				-1.4
1,240,637	-				+0.6
1,240,637	-				+0.2
1,240,644	+				+0.2
1,240,644	+				-0.1
1,240,644	+				+0.4
1,240,645	-				-1.0
1,240,645	-				-0.4
1,240,704	-				+1.6
1,240,788	-				-2.1
1,240,796	+				+1.2
1,240,796	+				-1.5
1,240,796	+				+1.2
1,240,798	+				+0.6
1,240,805	+				-1.7
1,240,805	+				+0.4
1,240,806	-				-1.4
1,240,824	-				+0.6
1,240,824	-				-0.3
1,240,849	+				+0.7
1,240,857	+				-0.7
1,240,891	+				-0.4
1,240,891	+				-0.6
1,240,892	-				+0.7
1,240,892	-				-0.1
1,240,892	-				+1.2
1,240,914	+				+0.9
1,240,915	-				+1.5
1,240,915	-				-1.7
1,240,924	-				+0.1
1,240,955	-				-0.5
1,240,960	+				+1.7
1,240,961	-				-0.7
1,240,991	+				+0.1
1,241,001	+				+0.6
1,241,043	+				+0.9
1,241,043	+				+1.1
1,241,044	-				-0.3
1,241,044	-				+0.2
1,241,073	+				-0.8
1,241,084	-		HGI48_RS05870	0.11	-0.5
1,241,084	-		HGI48_RS05870	0.11	-1.7
1,241,181	-		HGI48_RS05870	0.17	-1.1
1,241,193	+				+0.3
1,241,193	+		HGI48_RS05870	0.17	+0.3
1,241,193	+		HGI48_RS05870	0.17	-0.4
1,241,193	+		HGI48_RS05870	0.17	-1.5
1,241,194	-		HGI48_RS05870	0.18	+0.9
1,241,214	+		HGI48_RS05870	0.19	-1.1
1,241,215	-		HGI48_RS05870	0.19	+0.5
1,241,215	-		HGI48_RS05870	0.19	+0.9
1,241,215	-		HGI48_RS05870	0.19	-0.1
1,241,227	-		HGI48_RS05870	0.20	+0.4
1,241,227	-		HGI48_RS05870	0.20	+0.1
1,241,327	+		HGI48_RS05870	0.26	+0.9
1,241,328	-				-0.7
1,241,329	+		HGI48_RS05870	0.26	+0.9
1,241,329	+		HGI48_RS05870	0.26	-1.2
1,241,329	+		HGI48_RS05870	0.26	+0.3
1,241,329	+		HGI48_RS05870	0.26	-0.4
1,241,330	-		HGI48_RS05870	0.26	-0.2
1,241,336	+		HGI48_RS05870	0.26	-1.7
1,241,336	+				+2.2
1,241,337	-		HGI48_RS05870	0.27	-0.4
1,241,374	+		HGI48_RS05870	0.29	-0.9
1,241,375	-		HGI48_RS05870	0.29	-0.8
1,241,375	-		HGI48_RS05870	0.29	-0.1
1,241,384	+		HGI48_RS05870	0.29	+0.4
1,241,384	+		HGI48_RS05870	0.29	+0.1
1,241,384	+		HGI48_RS05870	0.29	-0.9
1,241,385	-		HGI48_RS05870	0.30	+0.6
1,241,385	-		HGI48_RS05870	0.30	+1.5
1,241,386	+				+0.9
1,241,386	+		HGI48_RS05870	0.30	+0.3
1,241,387	-		HGI48_RS05870	0.30	+0.4
1,241,387	-		HGI48_RS05870	0.30	-1.7
1,241,387	-		HGI48_RS05870	0.30	+0.2
1,241,387	-		HGI48_RS05870	0.30	+0.3
1,241,387	-		HGI48_RS05870	0.30	-0.3
1,241,396	+		HGI48_RS05870	0.30	-0.1
1,241,416	-		HGI48_RS05870	0.32	+0.2
1,241,416	-		HGI48_RS05870	0.32	+1.6
1,241,419	+		HGI48_RS05870	0.32	-0.4
1,241,419	+		HGI48_RS05870	0.32	+0.5
1,241,432	+		HGI48_RS05870	0.33	-0.6
1,241,432	+				+1.3
1,241,444	-		HGI48_RS05870	0.33	+0.2
1,241,462	+		HGI48_RS05870	0.34	-0.2
1,241,462	+		HGI48_RS05870	0.34	+0.6
1,241,463	-				+0.3
1,241,470	-		HGI48_RS05870	0.35	-2.9
1,241,496	+		HGI48_RS05870	0.37	-1.1
1,241,497	-		HGI48_RS05870	0.37	-2.1
1,241,573	+		HGI48_RS05870	0.41	+0.5
1,241,574	-		HGI48_RS05870	0.41	-0.7
1,241,613	+		HGI48_RS05870	0.44	-0.7
1,241,613	+		HGI48_RS05870	0.44	+0.7
1,241,614	-		HGI48_RS05870	0.44	-1.7
1,241,753	-		HGI48_RS05870	0.53	-0.7
1,241,753	-		HGI48_RS05870	0.53	+0.1
1,241,825	-		HGI48_RS05870	0.57	-1.4
1,241,836	+		HGI48_RS05870	0.58	-0.9
1,241,837	-				-0.7
1,241,837	-		HGI48_RS05870	0.58	-1.7
1,241,837	-		HGI48_RS05870	0.58	+0.5
1,241,843	-		HGI48_RS05870	0.58	-0.7
1,241,866	+		HGI48_RS05870	0.60	-1.4
1,241,866	+		HGI48_RS05870	0.60	+0.3
1,241,867	-		HGI48_RS05870	0.60	-0.7
1,241,867	-		HGI48_RS05870	0.60	-0.5
1,241,867	-		HGI48_RS05870	0.60	-0.1
1,241,907	+		HGI48_RS05870	0.62	-0.4
1,241,907	+		HGI48_RS05870	0.62	+0.6
1,241,908	-		HGI48_RS05870	0.63	+0.9
1,241,942	-		HGI48_RS05870	0.65	-0.3
1,241,959	+		HGI48_RS05870	0.66	-0.2
1,241,959	+		HGI48_RS05870	0.66	-0.3
1,241,960	-		HGI48_RS05870	0.66	+0.6
1,241,960	-		HGI48_RS05870	0.66	-2.5
1,242,010	+		HGI48_RS05870	0.69	-0.9
1,242,010	+		HGI48_RS05870	0.69	-1.4
1,242,010	+		HGI48_RS05870	0.69	+0.9
1,242,011	-		HGI48_RS05870	0.69	-0.7
1,242,011	-		HGI48_RS05870	0.69	-1.2
1,242,150	+		HGI48_RS05870	0.78	-0.5
1,242,151	-		HGI48_RS05870	0.78	-1.1
1,242,151	-		HGI48_RS05870	0.78	-2.1
1,242,163	-		HGI48_RS05870	0.79	-0.4
1,242,187	+		HGI48_RS05870	0.80	+0.4
1,242,247	-		HGI48_RS05870	0.84	+0.3
1,242,265	+		HGI48_RS05870	0.85	-0.5
1,242,265	+		HGI48_RS05870	0.85	+2.3
1,242,266	-		HGI48_RS05870	0.85	-1.3
1,242,266	-		HGI48_RS05870	0.85	-0.3
1,242,310	+		HGI48_RS05870	0.88	-0.5
1,242,310	+		HGI48_RS05870	0.88	-1.9
1,242,314	+		HGI48_RS05870	0.88	-0.5
1,242,314	+		HGI48_RS05870	0.88	-0.8
1,242,314	+		HGI48_RS05870	0.88	+0.7
1,242,314	+		HGI48_RS05870	0.88	+1.2
1,242,314	+		HGI48_RS05870	0.88	-0.1
1,242,314	+		HGI48_RS05870	0.88	-0.1
1,242,314	+		HGI48_RS05870	0.88	+0.2
1,242,314	+		HGI48_RS05870	0.88	-0.1
1,242,315	-		HGI48_RS05870	0.88	-0.9
1,242,315	-		HGI48_RS05870	0.88	+1.9
1,242,315	-		HGI48_RS05870	0.88	+0.9
1,242,315	-				+2.2
1,242,315	-		HGI48_RS05870	0.88	-0.2
1,242,315	-		HGI48_RS05870	0.88	-0.9
1,242,315	-				+0.3
1,242,316	+		HGI48_RS05870	0.88	-2.3
1,242,316	+		HGI48_RS05870	0.88	+2.6
1,242,316	+		HGI48_RS05870	0.88	+1.5
1,242,317	-		HGI48_RS05870	0.88	-0.9
1,242,362	-				-1.1
1,242,441	-				-1.1
1,242,448	+				-0.3
1,242,466	+				-0.7
1,242,500	+				+0.5
1,242,501	-				+0.3
1,242,501	-				-0.2
1,242,557	-				-1.7
1,242,595	+				-0.1
1,242,595	+				-0.2
1,242,596	-				+0.3
1,242,617	+				+1.9
1,242,618	-				-0.7
1,242,642	-				-2.1
1,242,732	-				-0.8
1,242,780	+				+1.2
1,242,780	+				-0.4
1,242,780	+				+0.2
1,242,788	+				+1.5
1,242,869	+				+1.6
1,242,874	-				-1.4
1,242,874	-				+0.2
1,242,874	-				+2.5
1,242,874	-				-1.3
1,242,920	+				+3.1
1,242,924	+		HGI48_RS05875	0.11	-0.6
1,242,925	-		HGI48_RS05875	0.11	-0.1
1,243,000	+		HGI48_RS05875	0.16	+0.2
1,243,000	+		HGI48_RS05875	0.16	-0.4
1,243,000	+		HGI48_RS05875	0.16	-1.7
1,243,001	-		HGI48_RS05875	0.16	+0.7
1,243,001	-		HGI48_RS05875	0.16	-0.7
1,243,001	-		HGI48_RS05875	0.16	-1.7
1,243,215	-		HGI48_RS05875	0.32	-1.7
1,243,289	-		HGI48_RS05875	0.37	+0.2
1,243,310	+		HGI48_RS05875	0.39	-1.1
1,243,310	+		HGI48_RS05875	0.39	-0.4
1,243,335	+		HGI48_RS05875	0.41	+1.9
1,243,335	+		HGI48_RS05875	0.41	-0.1
1,243,336	-		HGI48_RS05875	0.41	+0.5
1,243,336	-		HGI48_RS05875	0.41	-0.2
1,243,398	+		HGI48_RS05875	0.45	-0.4
1,243,398	+		HGI48_RS05875	0.45	+0.6
1,243,398	+		HGI48_RS05875	0.45	-0.3
1,243,399	-		HGI48_RS05875	0.45	-0.2
1,243,399	-		HGI48_RS05875	0.45	-1.1
1,243,401	+		HGI48_RS05875	0.46	+0.7
1,243,401	+		HGI48_RS05875	0.46	-0.2
1,243,401	+		HGI48_RS05875	0.46	-1.7
1,243,401	+		HGI48_RS05875	0.46	-0.7
1,243,402	-		HGI48_RS05875	0.46	+0.1
1,243,402	-				-0.7
1,243,402	-		HGI48_RS05875	0.46	-0.7