Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS03330 and HGI48_RS03335 overlap by 32 nucleotides HGI48_RS03335 and HGI48_RS03340 are separated by 188 nucleotides HGI48_RS03340 and HGI48_RS03345 are separated by 44 nucleotides
HGI48_RS03330: HGI48_RS03330 - ribosomal protein S18-alanine N-acetyltransferase, at 702,531 to 702,974
_RS03330
HGI48_RS03335: HGI48_RS03335 - DNA polymerase III subunit psi, at 702,943 to 703,362
_RS03335
HGI48_RS03340: HGI48_RS03340 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 703,551 to 704,579
_RS03340
HGI48_RS03345: HGI48_RS03345 - aldo/keto reductase, at 704,624 to 705,619
_RS03345
Position (kb) 703
704
705 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 702.587 kb on - strand, within HGI48_RS03330 at 702.589 kb on + strand, within HGI48_RS03330 at 702.590 kb on - strand, within HGI48_RS03330 at 702.590 kb on - strand, within HGI48_RS03330 at 702.632 kb on - strand, within HGI48_RS03330 at 702.675 kb on + strand, within HGI48_RS03330 at 702.675 kb on + strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.676 kb on - strand, within HGI48_RS03330 at 702.782 kb on + strand at 702.782 kb on + strand, within HGI48_RS03330 at 702.783 kb on - strand, within HGI48_RS03330 at 702.783 kb on - strand, within HGI48_RS03330 at 702.795 kb on + strand, within HGI48_RS03330 at 702.796 kb on - strand, within HGI48_RS03330 at 702.798 kb on + strand, within HGI48_RS03330 at 702.798 kb on + strand at 702.798 kb on + strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.799 kb on - strand, within HGI48_RS03330 at 702.814 kb on + strand, within HGI48_RS03330 at 702.814 kb on + strand, within HGI48_RS03330 at 702.815 kb on - strand, within HGI48_RS03330 at 702.913 kb on - strand, within HGI48_RS03330 at 703.368 kb on - strand at 703.401 kb on + strand at 703.420 kb on + strand at 703.421 kb on - strand at 703.421 kb on - strand at 703.421 kb on - strand at 703.436 kb on + strand at 703.436 kb on + strand at 703.437 kb on - strand at 703.482 kb on - strand at 703.514 kb on + strand at 703.514 kb on + strand at 703.514 kb on + strand at 703.514 kb on + strand at 703.515 kb on - strand at 703.515 kb on - strand at 703.515 kb on - strand at 703.516 kb on + strand at 703.516 kb on + strand at 703.516 kb on + strand at 703.517 kb on - strand at 703.517 kb on - strand at 703.517 kb on - strand at 703.517 kb on - strand at 703.582 kb on + strand at 703.583 kb on - strand at 703.643 kb on + strand at 703.643 kb on + strand at 703.644 kb on - strand at 703.644 kb on - strand at 703.644 kb on - strand at 703.681 kb on + strand at 703.681 kb on + strand, within HGI48_RS03340 at 703.681 kb on + strand, within HGI48_RS03340 at 703.682 kb on - strand, within HGI48_RS03340 at 703.682 kb on - strand, within HGI48_RS03340 at 703.696 kb on - strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.794 kb on + strand, within HGI48_RS03340 at 703.795 kb on - strand, within HGI48_RS03340 at 703.795 kb on - strand at 703.798 kb on - strand, within HGI48_RS03340 at 703.798 kb on - strand at 703.798 kb on - strand, within HGI48_RS03340 at 703.946 kb on + strand at 703.977 kb on + strand, within HGI48_RS03340 at 703.977 kb on + strand, within HGI48_RS03340 at 704.004 kb on - strand, within HGI48_RS03340 at 704.035 kb on - strand, within HGI48_RS03340 at 704.144 kb on + strand at 704.144 kb on + strand, within HGI48_RS03340 at 704.450 kb on + strand, within HGI48_RS03340 at 704.450 kb on + strand, within HGI48_RS03340 at 704.564 kb on + strand at 704.565 kb on - strand at 704.568 kb on - strand at 704.918 kb on - strand, within HGI48_RS03345 at 705.007 kb on + strand, within HGI48_RS03345 at 705.007 kb on + strand, within HGI48_RS03345 at 705.008 kb on - strand, within HGI48_RS03345 at 705.156 kb on - strand, within HGI48_RS03345 at 705.164 kb on - strand, within HGI48_RS03345 at 705.164 kb on - strand, within HGI48_RS03345 at 705.250 kb on - strand, within HGI48_RS03345 at 705.250 kb on - strand, within HGI48_RS03345 at 705.252 kb on + strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.253 kb on - strand, within HGI48_RS03345 at 705.263 kb on - strand at 705.263 kb on - strand, within HGI48_RS03345 at 705.312 kb on + strand at 705.312 kb on + strand, within HGI48_RS03345 at 705.313 kb on - strand, within HGI48_RS03345 at 705.440 kb on - strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand, within HGI48_RS03345 at 705.450 kb on + strand at 705.454 kb on + strand, within HGI48_RS03345 at 705.455 kb on - strand, within HGI48_RS03345 at 705.540 kb on + strand at 705.541 kb on - strand at 705.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 702,587 - HGI48_RS03330 0.13 -0.1 702,589 + HGI48_RS03330 0.13 -1.3 702,590 - HGI48_RS03330 0.13 +1.0 702,590 - HGI48_RS03330 0.13 -0.2 702,632 - HGI48_RS03330 0.23 +0.7 702,675 + HGI48_RS03330 0.32 +0.1 702,675 + HGI48_RS03330 0.32 +0.4 702,676 - HGI48_RS03330 0.33 -0.4 702,676 - HGI48_RS03330 0.33 -0.3 702,676 - HGI48_RS03330 0.33 +1.0 702,782 + +0.0 702,782 + HGI48_RS03330 0.57 +1.4 702,783 - HGI48_RS03330 0.57 +0.2 702,783 - HGI48_RS03330 0.57 +0.0 702,795 + HGI48_RS03330 0.59 -0.8 702,796 - HGI48_RS03330 0.60 -0.8 702,798 + HGI48_RS03330 0.60 +0.0 702,798 + -0.6 702,798 + HGI48_RS03330 0.60 +0.2 702,799 - HGI48_RS03330 0.60 -1.4 702,799 - HGI48_RS03330 0.60 +0.7 702,799 - HGI48_RS03330 0.60 +1.0 702,814 + HGI48_RS03330 0.64 +0.5 702,814 + HGI48_RS03330 0.64 +0.0 702,815 - HGI48_RS03330 0.64 -0.2 702,913 - HGI48_RS03330 0.86 -0.9 703,368 - -4.4 703,401 + +0.4 703,420 + -1.1 703,421 - +1.6 703,421 - -0.6 703,421 - -0.2 703,436 + -0.6 703,436 + +0.0 703,437 - +0.2 703,482 - -1.8 703,514 + -0.3 703,514 + +0.0 703,514 + +0.5 703,514 + +0.0 703,515 - -0.3 703,515 - +0.4 703,515 - +1.3 703,516 + -0.1 703,516 + -1.0 703,516 + -0.6 703,517 - +1.0 703,517 - -1.9 703,517 - +0.1 703,517 - +0.0 703,582 + +0.2 703,583 - +1.0 703,643 + -1.6 703,643 + -1.6 703,644 - -1.0 703,644 - +1.3 703,644 - -0.6 703,681 + +0.0 703,681 + HGI48_RS03340 0.13 +0.2 703,681 + HGI48_RS03340 0.13 -0.6 703,682 - HGI48_RS03340 0.13 +0.4 703,682 - HGI48_RS03340 0.13 +0.2 703,696 - HGI48_RS03340 0.14 -0.4 703,794 + HGI48_RS03340 0.24 +0.0 703,794 + HGI48_RS03340 0.24 -0.7 703,794 + HGI48_RS03340 0.24 -1.0 703,794 + HGI48_RS03340 0.24 -0.7 703,794 + HGI48_RS03340 0.24 -1.4 703,794 + HGI48_RS03340 0.24 -0.5 703,794 + HGI48_RS03340 0.24 +0.0 703,795 - HGI48_RS03340 0.24 -0.6 703,795 - +1.4 703,798 - HGI48_RS03340 0.24 -0.0 703,798 - +1.7 703,798 - HGI48_RS03340 0.24 +2.0 703,946 + -0.6 703,977 + HGI48_RS03340 0.41 -0.2 703,977 + HGI48_RS03340 0.41 +0.3 704,004 - HGI48_RS03340 0.44 +0.6 704,035 - HGI48_RS03340 0.47 +0.0 704,144 + -0.6 704,144 + HGI48_RS03340 0.58 -0.3 704,450 + HGI48_RS03340 0.87 +0.3 704,450 + HGI48_RS03340 0.87 -0.3 704,564 + +0.2 704,565 - -0.3 704,568 - -0.6 704,918 - HGI48_RS03345 0.30 -1.3 705,007 + HGI48_RS03345 0.38 +0.7 705,007 + HGI48_RS03345 0.38 -1.0 705,008 - HGI48_RS03345 0.39 -0.6 705,156 - HGI48_RS03345 0.53 -1.7 705,164 - HGI48_RS03345 0.54 -1.8 705,164 - HGI48_RS03345 0.54 -0.7 705,250 - HGI48_RS03345 0.63 +1.3 705,250 - HGI48_RS03345 0.63 -0.1 705,252 + HGI48_RS03345 0.63 -0.2 705,253 - HGI48_RS03345 0.63 +1.8 705,253 - HGI48_RS03345 0.63 +0.0 705,253 - HGI48_RS03345 0.63 -0.6 705,253 - HGI48_RS03345 0.63 +0.3 705,263 - +0.0 705,263 - HGI48_RS03345 0.64 -1.2 705,312 + +2.3 705,312 + HGI48_RS03345 0.69 +0.2 705,313 - HGI48_RS03345 0.69 +0.7 705,440 - HGI48_RS03345 0.82 +0.4 705,450 + HGI48_RS03345 0.83 -0.8 705,450 + HGI48_RS03345 0.83 +1.0 705,450 + HGI48_RS03345 0.83 -0.2 705,450 + HGI48_RS03345 0.83 +0.7 705,450 + +1.0 705,454 + HGI48_RS03345 0.83 +1.0 705,455 - HGI48_RS03345 0.83 -0.6 705,540 + +0.1 705,541 - +2.0 705,541 - +0.4
Or see this region's nucleotide sequence