Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS03075

Experiment: Atlantic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHGI48_RS03060 and HGI48_RS03065 are separated by 11 nucleotidesHGI48_RS03065 and HGI48_RS03070 are separated by 59 nucleotidesHGI48_RS03070 and HGI48_RS03075 are separated by 14 nucleotidesHGI48_RS03075 and HGI48_RS03080 overlap by 8 nucleotides HGI48_RS03060: HGI48_RS03060 - phage tail sheath protein, at 651,290 to 652,462 _RS03060 HGI48_RS03065: HGI48_RS03065 - phage major tail tube protein, at 652,474 to 652,989 _RS03065 HGI48_RS03070: HGI48_RS03070 - phage tail assembly protein, at 653,049 to 653,351 _RS03070 HGI48_RS03075: HGI48_RS03075 - GpE family phage tail protein, at 653,366 to 653,485 _RS03075 HGI48_RS03080: HGI48_RS03080 - phage tail tape measure protein, at 653,478 to 656,318 _RS03080 Position (kb) 653 654Strain fitness (log2 ratio) -2 -1 0 1at 652.370 kb on + strandat 652.370 kb on + strandat 652.370 kb on + strandat 652.370 kb on + strandat 652.370 kb on + strandat 652.370 kb on + strandat 652.371 kb on - strandat 652.371 kb on - strandat 652.371 kb on - strandat 652.371 kb on - strandat 652.371 kb on - strandat 652.371 kb on - strandat 652.371 kb on - strandat 652.427 kb on + strandat 652.427 kb on + strandat 652.427 kb on + strandat 652.427 kb on + strandat 652.427 kb on + strandat 652.427 kb on + strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.428 kb on - strandat 652.499 kb on - strandat 652.617 kb on + strand, within HGI48_RS03065at 652.743 kb on + strand, within HGI48_RS03065at 652.743 kb on + strand, within HGI48_RS03065at 652.873 kb on + strand, within HGI48_RS03065at 652.873 kb on + strand, within HGI48_RS03065at 652.874 kb on - strand, within HGI48_RS03065at 652.874 kb on - strand, within HGI48_RS03065at 652.874 kb on - strand, within HGI48_RS03065at 652.874 kb on - strand, within HGI48_RS03065at 652.876 kb on + strand, within HGI48_RS03065at 652.877 kb on - strand, within HGI48_RS03065at 652.877 kb on - strand, within HGI48_RS03065at 652.923 kb on + strand, within HGI48_RS03065at 652.923 kb on + strandat 652.987 kb on + strandat 652.987 kb on + strandat 653.031 kb on + strandat 653.032 kb on - strandat 653.032 kb on - strandat 653.032 kb on - strandat 653.037 kb on - strandat 653.141 kb on + strand, within HGI48_RS03070at 653.142 kb on - strand, within HGI48_RS03070at 653.225 kb on + strand, within HGI48_RS03070at 653.483 kb on + strandat 653.483 kb on + strandat 653.483 kb on + strandat 653.483 kb on + strandat 653.483 kb on + strandat 653.484 kb on - strandat 653.484 kb on - strandat 653.484 kb on - strandat 653.484 kb on - strandat 653.484 kb on - strandat 653.484 kb on - strandat 653.487 kb on - strandat 653.487 kb on - strandat 653.521 kb on + strandat 653.521 kb on + strandat 653.521 kb on + strandat 653.522 kb on - strandat 653.522 kb on - strandat 653.522 kb on - strandat 653.522 kb on - strandat 653.525 kb on + strandat 653.679 kb on - strandat 653.807 kb on + strand, within HGI48_RS03080at 653.807 kb on + strand, within HGI48_RS03080at 653.808 kb on - strand, within HGI48_RS03080at 653.808 kb on - strandat 653.811 kb on + strand, within HGI48_RS03080at 653.811 kb on + strand, within HGI48_RS03080at 653.811 kb on + strand, within HGI48_RS03080at 653.811 kb on + strand, within HGI48_RS03080at 653.811 kb on + strand, within HGI48_RS03080at 653.812 kb on - strand, within HGI48_RS03080at 653.812 kb on - strand, within HGI48_RS03080at 653.812 kb on - strand, within HGI48_RS03080at 653.812 kb on - strand, within HGI48_RS03080at 653.812 kb on - strand, within HGI48_RS03080at 653.812 kb on - strand, within HGI48_RS03080at 654.114 kb on + strand, within HGI48_RS03080at 654.115 kb on - strand, within HGI48_RS03080at 654.334 kb on - strand, within HGI48_RS03080at 654.459 kb on + strand, within HGI48_RS03080at 654.470 kb on - strand, within HGI48_RS03080at 654.470 kb on - strand, within HGI48_RS03080

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
remove
652,370 + -0.6
652,370 + +1.0
652,370 + -1.3
652,370 + -0.0
652,370 + -2.2
652,370 + +0.4
652,371 - -0.0
652,371 - +0.1
652,371 - +0.6
652,371 - -0.2
652,371 - -1.0
652,371 - +0.7
652,371 - +0.3
652,427 + -0.3
652,427 + -0.6
652,427 + +0.5
652,427 + -1.3
652,427 + -1.3
652,427 + -0.0
652,428 - +0.4
652,428 - -1.0
652,428 - -0.0
652,428 - +0.4
652,428 - +1.3
652,428 - +0.7
652,428 - +0.4
652,428 - +0.6
652,499 - +0.5
652,617 + HGI48_RS03065 0.28 +0.3
652,743 + HGI48_RS03065 0.52 -0.0
652,743 + HGI48_RS03065 0.52 -1.3
652,873 + HGI48_RS03065 0.77 -1.6
652,873 + HGI48_RS03065 0.77 -1.0
652,874 - HGI48_RS03065 0.78 +0.6
652,874 - HGI48_RS03065 0.78 -0.1
652,874 - HGI48_RS03065 0.78 -1.0
652,874 - HGI48_RS03065 0.78 +1.3
652,876 + HGI48_RS03065 0.78 -0.1
652,877 - HGI48_RS03065 0.78 -0.7
652,877 - HGI48_RS03065 0.78 -0.0
652,923 + HGI48_RS03065 0.87 -1.6
652,923 + -0.0
652,987 + -1.7
652,987 + +0.0
653,031 + -0.7
653,032 - +0.7
653,032 - -0.0
653,032 - +0.3
653,037 - +1.0
653,141 + HGI48_RS03070 0.30 -0.0
653,142 - HGI48_RS03070 0.31 -1.0
653,225 + HGI48_RS03070 0.58 -0.1
653,483 + +0.1
653,483 + -0.2
653,483 + +0.3
653,483 + -0.7
653,483 + -0.7
653,484 - +0.2
653,484 - -1.3
653,484 - +1.0
653,484 - +0.4
653,484 - +0.3
653,484 - -1.5
653,487 - +1.4
653,487 - +0.6
653,521 + +0.8
653,521 + +1.4
653,521 + -0.6
653,522 - -0.8
653,522 - -0.6
653,522 - -2.0
653,522 - +0.5
653,525 + +0.2
653,679 - -0.6
653,807 + HGI48_RS03080 0.12 +0.4
653,807 + HGI48_RS03080 0.12 -1.0
653,808 - HGI48_RS03080 0.12 +0.1
653,808 - +0.4
653,811 + HGI48_RS03080 0.12 -0.0
653,811 + HGI48_RS03080 0.12 -2.7
653,811 + HGI48_RS03080 0.12 -1.0
653,811 + HGI48_RS03080 0.12 -2.0
653,811 + HGI48_RS03080 0.12 +1.5
653,812 - HGI48_RS03080 0.12 -0.2
653,812 - HGI48_RS03080 0.12 -1.3
653,812 - HGI48_RS03080 0.12 +1.0
653,812 - HGI48_RS03080 0.12 +1.7
653,812 - HGI48_RS03080 0.12 -0.2
653,812 - HGI48_RS03080 0.12 -0.6
654,114 + HGI48_RS03080 0.22 +0.6
654,115 - HGI48_RS03080 0.22 -1.3
654,334 - HGI48_RS03080 0.30 +1.3
654,459 + HGI48_RS03080 0.35 +0.1
654,470 - HGI48_RS03080 0.35 +0.2
654,470 - HGI48_RS03080 0.35 -0.0

Or see this region's nucleotide sequence