Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS02385 and HGI48_RS02390 are separated by 129 nucleotides HGI48_RS02390 and HGI48_RS02395 are separated by 15 nucleotides
HGI48_RS02385: HGI48_RS02385 - phosphoserine phosphatase, at 516,997 to 517,974
_RS02385
HGI48_RS02390: HGI48_RS02390 - YtjB family periplasmic protein, at 518,104 to 518,784
_RS02390
HGI48_RS02395: HGI48_RS02395 - trans-aconitate 2-methyltransferase, at 518,800 to 519,576
_RS02395
Position (kb) 518
519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 517.227 kb on + strand, within HGI48_RS02385 at 517.228 kb on - strand, within HGI48_RS02385 at 517.230 kb on - strand, within HGI48_RS02385 at 517.230 kb on - strand, within HGI48_RS02385 at 517.230 kb on - strand, within HGI48_RS02385 at 517.334 kb on + strand, within HGI48_RS02385 at 517.334 kb on + strand, within HGI48_RS02385 at 517.334 kb on + strand, within HGI48_RS02385 at 517.335 kb on - strand, within HGI48_RS02385 at 517.335 kb on - strand, within HGI48_RS02385 at 517.346 kb on + strand, within HGI48_RS02385 at 517.346 kb on + strand, within HGI48_RS02385 at 517.347 kb on - strand, within HGI48_RS02385 at 517.593 kb on + strand, within HGI48_RS02385 at 517.594 kb on - strand, within HGI48_RS02385 at 517.594 kb on - strand, within HGI48_RS02385 at 517.667 kb on + strand, within HGI48_RS02385 at 517.667 kb on + strand, within HGI48_RS02385 at 517.668 kb on - strand, within HGI48_RS02385 at 517.817 kb on - strand, within HGI48_RS02385 at 517.819 kb on + strand, within HGI48_RS02385 at 517.819 kb on + strand, within HGI48_RS02385 at 517.820 kb on - strand, within HGI48_RS02385 at 517.820 kb on - strand, within HGI48_RS02385 at 517.823 kb on + strand, within HGI48_RS02385 at 517.823 kb on + strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.824 kb on - strand, within HGI48_RS02385 at 517.844 kb on + strand, within HGI48_RS02385 at 517.844 kb on + strand, within HGI48_RS02385 at 517.845 kb on - strand, within HGI48_RS02385 at 517.874 kb on + strand, within HGI48_RS02385 at 517.955 kb on + strand at 517.956 kb on - strand at 517.956 kb on - strand at 517.979 kb on + strand at 517.979 kb on + strand at 517.979 kb on + strand at 517.980 kb on - strand at 517.983 kb on + strand at 517.984 kb on - strand at 517.984 kb on - strand at 517.984 kb on - strand at 518.046 kb on + strand at 518.047 kb on - strand at 518.047 kb on - strand at 518.098 kb on - strand at 518.098 kb on - strand at 518.098 kb on - strand at 518.133 kb on - strand at 518.133 kb on - strand at 518.133 kb on - strand at 518.133 kb on - strand at 518.183 kb on + strand, within HGI48_RS02390 at 518.197 kb on + strand, within HGI48_RS02390 at 518.198 kb on - strand, within HGI48_RS02390 at 518.198 kb on - strand, within HGI48_RS02390 at 518.378 kb on + strand, within HGI48_RS02390 at 518.379 kb on - strand, within HGI48_RS02390 at 518.379 kb on - strand, within HGI48_RS02390 at 518.379 kb on - strand, within HGI48_RS02390 at 518.379 kb on - strand at 518.380 kb on + strand, within HGI48_RS02390 at 518.471 kb on - strand, within HGI48_RS02390 at 518.505 kb on + strand, within HGI48_RS02390 at 518.505 kb on + strand, within HGI48_RS02390 at 518.505 kb on + strand at 518.535 kb on + strand, within HGI48_RS02390 at 518.635 kb on - strand, within HGI48_RS02390 at 518.689 kb on + strand, within HGI48_RS02390 at 518.689 kb on + strand, within HGI48_RS02390 at 518.690 kb on - strand, within HGI48_RS02390 at 518.690 kb on - strand, within HGI48_RS02390 at 518.767 kb on - strand at 518.794 kb on - strand at 518.837 kb on + strand at 518.838 kb on - strand at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.979 kb on + strand, within HGI48_RS02395 at 518.980 kb on - strand, within HGI48_RS02395 at 518.980 kb on - strand at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.008 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.011 kb on + strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.012 kb on - strand, within HGI48_RS02395 at 519.062 kb on + strand, within HGI48_RS02395 at 519.063 kb on - strand, within HGI48_RS02395 at 519.065 kb on + strand, within HGI48_RS02395 at 519.284 kb on + strand, within HGI48_RS02395 at 519.285 kb on - strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.342 kb on + strand, within HGI48_RS02395 at 519.343 kb on - strand, within HGI48_RS02395 at 519.551 kb on + strand at 519.591 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.608 kb on + strand at 519.621 kb on + strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.622 kb on - strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.629 kb on + strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.630 kb on - strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.728 kb on + strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.729 kb on - strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.732 kb on + strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.733 kb on - strand at 519.744 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.748 kb on + strand at 519.749 kb on - strand at 519.761 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 517,227 + HGI48_RS02385 0.24 -2.9 517,228 - HGI48_RS02385 0.24 -3.5 517,230 - HGI48_RS02385 0.24 -1.3 517,230 - HGI48_RS02385 0.24 -1.3 517,230 - HGI48_RS02385 0.24 -0.9 517,334 + HGI48_RS02385 0.34 +0.2 517,334 + HGI48_RS02385 0.34 +0.5 517,334 + HGI48_RS02385 0.34 -2.4 517,335 - HGI48_RS02385 0.35 -2.8 517,335 - HGI48_RS02385 0.35 -1.3 517,346 + HGI48_RS02385 0.36 -2.6 517,346 + HGI48_RS02385 0.36 +0.5 517,347 - HGI48_RS02385 0.36 -1.3 517,593 + HGI48_RS02385 0.61 -2.8 517,594 - HGI48_RS02385 0.61 -2.5 517,594 - HGI48_RS02385 0.61 +1.1 517,667 + HGI48_RS02385 0.69 -0.9 517,667 + HGI48_RS02385 0.69 -1.3 517,668 - HGI48_RS02385 0.69 -1.2 517,817 - HGI48_RS02385 0.84 -0.9 517,819 + HGI48_RS02385 0.84 -2.9 517,819 + HGI48_RS02385 0.84 -2.5 517,820 - HGI48_RS02385 0.84 -0.9 517,820 - HGI48_RS02385 0.84 -1.5 517,823 + HGI48_RS02385 0.84 +0.2 517,823 + HGI48_RS02385 0.84 +0.9 517,824 - HGI48_RS02385 0.85 -1.5 517,824 - HGI48_RS02385 0.85 -3.9 517,824 - HGI48_RS02385 0.85 -0.9 517,824 - HGI48_RS02385 0.85 -0.9 517,844 + HGI48_RS02385 0.87 -2.4 517,844 + HGI48_RS02385 0.87 -4.1 517,845 - HGI48_RS02385 0.87 -1.9 517,874 + HGI48_RS02385 0.90 -1.9 517,955 + -2.4 517,956 - -0.5 517,956 - +3.4 517,979 + -2.3 517,979 + -1.3 517,979 + -0.5 517,980 - -0.1 517,983 + -1.3 517,984 - -1.5 517,984 - +1.1 517,984 - -0.3 518,046 + -1.3 518,047 - +0.5 518,047 - -1.4 518,098 - -0.8 518,098 - +0.2 518,098 - -1.7 518,133 - -0.7 518,133 - +1.1 518,133 - +1.3 518,133 - -0.0 518,183 + HGI48_RS02390 0.12 +0.5 518,197 + HGI48_RS02390 0.14 -1.3 518,198 - HGI48_RS02390 0.14 -0.8 518,198 - HGI48_RS02390 0.14 +0.6 518,378 + HGI48_RS02390 0.40 -1.5 518,379 - HGI48_RS02390 0.40 -0.4 518,379 - HGI48_RS02390 0.40 -0.5 518,379 - HGI48_RS02390 0.40 -1.7 518,379 - +1.1 518,380 + HGI48_RS02390 0.41 +1.1 518,471 - HGI48_RS02390 0.54 -0.1 518,505 + HGI48_RS02390 0.59 +0.5 518,505 + HGI48_RS02390 0.59 +1.9 518,505 + +1.6 518,535 + HGI48_RS02390 0.63 +0.5 518,635 - HGI48_RS02390 0.78 +3.1 518,689 + HGI48_RS02390 0.86 -0.1 518,689 + HGI48_RS02390 0.86 -0.4 518,690 - HGI48_RS02390 0.86 +0.1 518,690 - HGI48_RS02390 0.86 +0.7 518,767 - -2.8 518,794 - -0.4 518,837 + -1.1 518,838 - -0.9 518,979 + HGI48_RS02395 0.23 -0.2 518,979 + HGI48_RS02395 0.23 +0.2 518,979 + HGI48_RS02395 0.23 +1.3 518,980 - HGI48_RS02395 0.23 -1.3 518,980 - +1.1 519,008 + HGI48_RS02395 0.27 +0.6 519,008 + HGI48_RS02395 0.27 -0.6 519,008 + HGI48_RS02395 0.27 -0.6 519,011 + HGI48_RS02395 0.27 +0.9 519,011 + +0.5 519,011 + HGI48_RS02395 0.27 +0.2 519,011 + HGI48_RS02395 0.27 -1.3 519,011 + HGI48_RS02395 0.27 -0.0 519,011 + HGI48_RS02395 0.27 -0.2 519,011 + HGI48_RS02395 0.27 -0.5 519,012 - HGI48_RS02395 0.27 -1.9 519,012 - HGI48_RS02395 0.27 +0.5 519,012 - HGI48_RS02395 0.27 -0.5 519,012 - HGI48_RS02395 0.27 +0.5 519,062 + HGI48_RS02395 0.34 +0.3 519,063 - HGI48_RS02395 0.34 +0.2 519,065 + HGI48_RS02395 0.34 +0.1 519,284 + HGI48_RS02395 0.62 +0.9 519,285 - HGI48_RS02395 0.62 +0.5 519,342 + HGI48_RS02395 0.70 -2.4 519,342 + HGI48_RS02395 0.70 +0.5 519,342 + HGI48_RS02395 0.70 -0.5 519,343 - HGI48_RS02395 0.70 -0.9 519,551 + +1.9 519,591 + +0.5 519,608 + +0.1 519,608 + +1.6 519,608 + +0.1 519,621 + -1.3 519,622 - +1.4 519,622 - +1.2 519,622 - +0.6 519,629 + -1.1 519,629 + -1.9 519,629 + +0.8 519,629 + +0.1 519,630 - +0.2 519,630 - +0.1 519,630 - +0.5 519,728 + -2.3 519,728 + -0.4 519,728 + -1.8 519,728 + -1.1 519,728 + -0.3 519,728 + +0.3 519,728 + -0.5 519,728 + +0.5 519,728 + +0.1 519,728 + +1.1 519,728 + -0.4 519,728 + +0.2 519,728 + +1.3 519,729 - -0.3 519,729 - -1.8 519,729 - -0.5 519,729 - +1.1 519,732 + -1.0 519,732 + +0.8 519,732 + +1.1 519,732 + -0.2 519,732 + +2.1 519,733 - +1.9 519,733 - -0.4 519,733 - -0.9 519,744 + +0.6 519,748 + -0.0 519,748 + +0.8 519,748 + +0.8 519,748 + +0.8 519,748 + +0.1 519,748 + +0.7 519,748 + +0.8 519,748 + +3.1 519,748 + +0.2 519,748 + -0.5 519,748 + -0.9 519,749 - -1.8 519,761 + -0.2
Or see this region's nucleotide sequence