Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01750 and HGI48_RS01755 are separated by 233 nucleotides HGI48_RS01755 and HGI48_RS01760 are separated by 84 nucleotides
HGI48_RS01750: HGI48_RS01750 - iron-containing alcohol dehydrogenase, at 386,699 to 387,850
_RS01750
HGI48_RS01755: HGI48_RS01755 - rhamnulose-1-phosphate aldolase, at 388,084 to 388,911
_RS01755
HGI48_RS01760: HGI48_RS01760 - LacI family DNA-binding transcriptional regulator, at 388,996 to 390,027
_RS01760
Position (kb) 388
389 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 387.305 kb on + strand, within HGI48_RS01750 at 387.305 kb on + strand, within HGI48_RS01750 at 387.305 kb on + strand, within HGI48_RS01750 at 387.305 kb on + strand at 387.305 kb on + strand, within HGI48_RS01750 at 387.306 kb on - strand, within HGI48_RS01750 at 387.306 kb on - strand, within HGI48_RS01750 at 387.479 kb on + strand, within HGI48_RS01750 at 387.480 kb on - strand, within HGI48_RS01750 at 387.480 kb on - strand, within HGI48_RS01750 at 387.637 kb on + strand, within HGI48_RS01750 at 387.637 kb on + strand, within HGI48_RS01750 at 387.637 kb on + strand at 387.833 kb on + strand at 387.834 kb on - strand at 387.834 kb on - strand at 387.849 kb on - strand at 387.849 kb on - strand at 387.897 kb on + strand at 387.898 kb on - strand at 387.898 kb on - strand at 388.029 kb on + strand at 388.029 kb on + strand at 388.030 kb on - strand at 388.030 kb on - strand at 388.079 kb on + strand at 388.079 kb on + strand at 388.080 kb on - strand at 388.080 kb on - strand at 388.082 kb on + strand at 388.082 kb on + strand at 388.082 kb on + strand at 388.082 kb on + strand at 388.082 kb on + strand at 388.083 kb on - strand at 388.083 kb on - strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.094 kb on + strand at 388.095 kb on - strand at 388.095 kb on - strand at 388.095 kb on - strand at 388.095 kb on - strand at 388.095 kb on - strand at 388.095 kb on - strand at 388.150 kb on + strand at 388.150 kb on + strand at 388.151 kb on - strand at 388.151 kb on - strand at 388.151 kb on - strand at 388.151 kb on - strand at 388.191 kb on + strand, within HGI48_RS01755 at 388.192 kb on - strand, within HGI48_RS01755 at 388.409 kb on - strand, within HGI48_RS01755 at 388.444 kb on + strand, within HGI48_RS01755 at 388.444 kb on + strand, within HGI48_RS01755 at 388.445 kb on - strand, within HGI48_RS01755 at 388.464 kb on + strand, within HGI48_RS01755 at 388.464 kb on + strand, within HGI48_RS01755 at 388.465 kb on - strand, within HGI48_RS01755 at 388.465 kb on - strand, within HGI48_RS01755 at 388.481 kb on + strand, within HGI48_RS01755 at 388.481 kb on + strand at 388.481 kb on + strand, within HGI48_RS01755 at 388.482 kb on - strand, within HGI48_RS01755 at 388.482 kb on - strand, within HGI48_RS01755 at 388.482 kb on - strand, within HGI48_RS01755 at 388.482 kb on - strand, within HGI48_RS01755 at 388.573 kb on + strand, within HGI48_RS01755 at 388.584 kb on + strand, within HGI48_RS01755 at 388.584 kb on + strand, within HGI48_RS01755 at 388.584 kb on + strand, within HGI48_RS01755 at 388.594 kb on + strand, within HGI48_RS01755 at 388.595 kb on - strand, within HGI48_RS01755 at 388.666 kb on + strand at 388.667 kb on - strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.671 kb on + strand, within HGI48_RS01755 at 388.672 kb on - strand, within HGI48_RS01755 at 388.672 kb on - strand at 388.672 kb on - strand, within HGI48_RS01755 at 388.704 kb on + strand, within HGI48_RS01755 at 388.705 kb on - strand, within HGI48_RS01755 at 388.705 kb on - strand, within HGI48_RS01755 at 388.705 kb on - strand, within HGI48_RS01755 at 388.761 kb on + strand, within HGI48_RS01755 at 388.762 kb on - strand, within HGI48_RS01755 at 388.878 kb on + strand at 388.879 kb on - strand at 388.909 kb on + strand at 388.909 kb on + strand at 388.909 kb on + strand at 388.910 kb on - strand at 388.933 kb on + strand at 388.933 kb on + strand at 388.934 kb on - strand at 388.939 kb on + strand at 388.939 kb on + strand at 388.939 kb on + strand at 388.939 kb on + strand at 388.939 kb on + strand at 388.940 kb on - strand at 388.940 kb on - strand at 388.972 kb on + strand at 388.972 kb on + strand at 388.972 kb on + strand at 388.973 kb on - strand at 388.973 kb on - strand at 388.973 kb on - strand at 388.973 kb on - strand at 388.980 kb on + strand at 388.981 kb on - strand at 388.981 kb on - strand at 389.054 kb on + strand at 389.054 kb on + strand at 389.054 kb on + strand at 389.055 kb on - strand at 389.055 kb on - strand at 389.055 kb on - strand at 389.055 kb on - strand at 389.055 kb on - strand at 389.180 kb on + strand, within HGI48_RS01760 at 389.180 kb on + strand, within HGI48_RS01760 at 389.180 kb on + strand, within HGI48_RS01760 at 389.181 kb on - strand, within HGI48_RS01760 at 389.181 kb on - strand, within HGI48_RS01760 at 389.181 kb on - strand, within HGI48_RS01760 at 389.333 kb on + strand, within HGI48_RS01760 at 389.351 kb on + strand, within HGI48_RS01760 at 389.351 kb on + strand, within HGI48_RS01760 at 389.351 kb on + strand, within HGI48_RS01760 at 389.351 kb on + strand, within HGI48_RS01760 at 389.351 kb on + strand, within HGI48_RS01760 at 389.352 kb on - strand, within HGI48_RS01760 at 389.352 kb on - strand, within HGI48_RS01760 at 389.352 kb on - strand at 389.352 kb on - strand, within HGI48_RS01760 at 389.352 kb on - strand, within HGI48_RS01760 at 389.352 kb on - strand, within HGI48_RS01760 at 389.468 kb on + strand at 389.468 kb on + strand, within HGI48_RS01760 at 389.468 kb on + strand at 389.469 kb on - strand, within HGI48_RS01760 at 389.469 kb on - strand, within HGI48_RS01760 at 389.612 kb on + strand, within HGI48_RS01760 at 389.612 kb on + strand, within HGI48_RS01760 at 389.626 kb on + strand, within HGI48_RS01760 at 389.626 kb on + strand, within HGI48_RS01760 at 389.626 kb on + strand, within HGI48_RS01760 at 389.790 kb on - strand, within HGI48_RS01760
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 387,305 + HGI48_RS01750 0.53 -0.8 387,305 + HGI48_RS01750 0.53 +0.1 387,305 + HGI48_RS01750 0.53 -0.9 387,305 + +4.4 387,305 + HGI48_RS01750 0.53 -0.9 387,306 - HGI48_RS01750 0.53 +1.1 387,306 - HGI48_RS01750 0.53 +0.1 387,479 + HGI48_RS01750 0.68 +0.7 387,480 - HGI48_RS01750 0.68 +0.4 387,480 - HGI48_RS01750 0.68 -0.8 387,637 + HGI48_RS01750 0.81 -1.7 387,637 + HGI48_RS01750 0.81 -0.2 387,637 + +1.1 387,833 + +1.1 387,834 - -1.7 387,834 - -0.5 387,849 - -0.4 387,849 - -0.1 387,897 + -0.6 387,898 - +0.6 387,898 - -1.5 388,029 + +1.4 388,029 + +0.1 388,030 - +1.3 388,030 - -1.1 388,079 + +0.1 388,079 + +0.1 388,080 - -0.1 388,080 - -1.3 388,082 + -1.6 388,082 + +2.4 388,082 + +1.1 388,082 + +0.1 388,082 + -0.3 388,083 - -2.3 388,083 - -0.1 388,094 + -1.2 388,094 + -0.5 388,094 + -0.1 388,094 + -1.5 388,094 + +0.6 388,094 + +2.6 388,094 + +0.7 388,094 + +1.1 388,095 - +0.2 388,095 - +0.7 388,095 - -1.1 388,095 - -0.5 388,095 - -1.2 388,095 - +1.1 388,150 + +1.0 388,150 + +0.1 388,151 - -0.1 388,151 - -1.8 388,151 - +0.3 388,151 - +0.1 388,191 + HGI48_RS01755 0.13 +0.1 388,192 - HGI48_RS01755 0.13 -0.2 388,409 - HGI48_RS01755 0.39 +0.3 388,444 + HGI48_RS01755 0.43 +0.6 388,444 + HGI48_RS01755 0.43 -0.3 388,445 - HGI48_RS01755 0.44 +0.0 388,464 + HGI48_RS01755 0.46 +0.1 388,464 + HGI48_RS01755 0.46 -0.6 388,465 - HGI48_RS01755 0.46 +0.8 388,465 - HGI48_RS01755 0.46 -0.3 388,481 + HGI48_RS01755 0.48 -0.8 388,481 + -0.5 388,481 + HGI48_RS01755 0.48 -0.5 388,482 - HGI48_RS01755 0.48 -1.5 388,482 - HGI48_RS01755 0.48 +1.7 388,482 - HGI48_RS01755 0.48 -1.5 388,482 - HGI48_RS01755 0.48 +0.6 388,573 + HGI48_RS01755 0.59 -0.7 388,584 + HGI48_RS01755 0.60 -0.1 388,584 + HGI48_RS01755 0.60 -0.5 388,584 + HGI48_RS01755 0.60 +0.1 388,594 + HGI48_RS01755 0.62 -0.2 388,595 - HGI48_RS01755 0.62 +0.6 388,666 + -0.5 388,667 - HGI48_RS01755 0.70 +0.5 388,671 + HGI48_RS01755 0.71 +0.3 388,671 + HGI48_RS01755 0.71 -0.7 388,671 + HGI48_RS01755 0.71 -0.0 388,671 + HGI48_RS01755 0.71 +1.1 388,671 + HGI48_RS01755 0.71 +0.1 388,671 + HGI48_RS01755 0.71 +0.3 388,671 + HGI48_RS01755 0.71 -0.1 388,671 + HGI48_RS01755 0.71 -1.1 388,671 + HGI48_RS01755 0.71 +0.5 388,672 - HGI48_RS01755 0.71 -0.7 388,672 - +1.1 388,672 - HGI48_RS01755 0.71 -0.2 388,704 + HGI48_RS01755 0.75 +1.1 388,705 - HGI48_RS01755 0.75 +0.5 388,705 - HGI48_RS01755 0.75 -0.2 388,705 - HGI48_RS01755 0.75 -1.2 388,761 + HGI48_RS01755 0.82 -0.5 388,762 - HGI48_RS01755 0.82 -1.7 388,878 + +0.1 388,879 - -0.3 388,909 + -0.4 388,909 + +0.3 388,909 + +2.0 388,910 - -0.1 388,933 + +1.1 388,933 + -0.2 388,934 - -0.3 388,939 + -0.4 388,939 + -0.3 388,939 + -0.1 388,939 + -1.2 388,939 + -1.2 388,940 - -0.7 388,940 - +0.7 388,972 + -0.2 388,972 + -0.7 388,972 + -0.5 388,973 - +0.7 388,973 - -1.6 388,973 - -0.2 388,973 - -0.1 388,980 + +1.3 388,981 - +2.1 388,981 - +0.8 389,054 + +0.1 389,054 + +0.3 389,054 + -0.0 389,055 - +0.1 389,055 - +0.7 389,055 - -0.4 389,055 - -0.5 389,055 - +1.0 389,180 + HGI48_RS01760 0.18 +0.9 389,180 + HGI48_RS01760 0.18 +0.9 389,180 + HGI48_RS01760 0.18 -0.6 389,181 - HGI48_RS01760 0.18 -2.3 389,181 - HGI48_RS01760 0.18 +1.7 389,181 - HGI48_RS01760 0.18 +1.7 389,333 + HGI48_RS01760 0.33 -0.2 389,351 + HGI48_RS01760 0.34 +0.9 389,351 + HGI48_RS01760 0.34 +0.4 389,351 + HGI48_RS01760 0.34 -0.2 389,351 + HGI48_RS01760 0.34 +0.3 389,351 + HGI48_RS01760 0.34 -1.5 389,352 - HGI48_RS01760 0.34 -0.4 389,352 - HGI48_RS01760 0.34 -0.7 389,352 - +1.5 389,352 - HGI48_RS01760 0.34 -0.5 389,352 - HGI48_RS01760 0.34 -0.9 389,352 - HGI48_RS01760 0.34 -0.2 389,468 + +1.1 389,468 + HGI48_RS01760 0.46 -0.5 389,468 + +2.1 389,469 - HGI48_RS01760 0.46 +2.4 389,469 - HGI48_RS01760 0.46 -0.3 389,612 + HGI48_RS01760 0.60 -0.9 389,612 + HGI48_RS01760 0.60 +2.2 389,626 + HGI48_RS01760 0.61 -0.1 389,626 + HGI48_RS01760 0.61 +3.8 389,626 + HGI48_RS01760 0.61 -1.1 389,790 - HGI48_RS01760 0.77 -0.1
Or see this region's nucleotide sequence