Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HGI48_RS01400 and HGI48_RS01405 are separated by 6 nucleotides HGI48_RS01405 and HGI48_RS01410 are separated by 293 nucleotides HGI48_RS01410 and HGI48_RS01415 are separated by 190 nucleotides
HGI48_RS01400: HGI48_RS01400 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 313,028 to 314,977
_RS01400
HGI48_RS01405: HGI48_RS01405 - DUF1543 domain-containing protein, at 314,984 to 315,484
_RS01405
HGI48_RS01410: HGI48_RS01410 - ribosome-associated protein, at 315,778 to 316,326
_RS01410
HGI48_RS01415: HGI48_RS01415 - metalloprotease PmbA, at 316,517 to 317,857
_RS01415
Position (kb) 315
316
317 Strain fitness (log2 ratio) -2
-1
0
1
2 at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.873 kb on + strand at 314.874 kb on - strand at 314.874 kb on - strand at 314.956 kb on + strand at 314.957 kb on - strand at 314.986 kb on - strand at 314.997 kb on + strand at 315.245 kb on - strand at 315.292 kb on + strand at 315.292 kb on + strand at 315.293 kb on - strand, within HGI48_RS01405 at 315.293 kb on - strand at 315.297 kb on + strand, within HGI48_RS01405 at 315.297 kb on + strand, within HGI48_RS01405 at 315.298 kb on - strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand at 315.324 kb on + strand at 315.324 kb on + strand, within HGI48_RS01405 at 315.324 kb on + strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.325 kb on - strand, within HGI48_RS01405 at 315.325 kb on - strand at 315.328 kb on + strand, within HGI48_RS01405 at 315.462 kb on + strand at 315.462 kb on + strand at 315.462 kb on + strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.463 kb on - strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.465 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.469 kb on + strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.470 kb on - strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.473 kb on + strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.474 kb on - strand at 315.506 kb on + strand at 315.507 kb on - strand at 315.535 kb on - strand at 315.538 kb on - strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.568 kb on + strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.569 kb on - strand at 315.597 kb on + strand at 315.598 kb on - strand at 315.598 kb on - strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.731 kb on + strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.732 kb on - strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.733 kb on + strand at 315.734 kb on - strand at 315.734 kb on - strand at 315.761 kb on + strand at 315.776 kb on + strand at 315.776 kb on + strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.777 kb on - strand at 315.779 kb on + strand at 315.806 kb on + strand at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.255 kb on + strand, within HGI48_RS01410 at 316.256 kb on - strand, within HGI48_RS01410 at 316.340 kb on + strand at 316.340 kb on + strand at 316.400 kb on - strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.416 kb on + strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.417 kb on - strand at 316.427 kb on - strand at 316.438 kb on - strand at 316.438 kb on - strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.482 kb on + strand at 316.483 kb on - strand at 316.483 kb on - strand at 316.498 kb on + strand at 316.524 kb on + strand at 316.524 kb on + strand at 316.525 kb on - strand at 316.715 kb on + strand, within HGI48_RS01415 at 316.716 kb on - strand, within HGI48_RS01415 at 316.718 kb on + strand, within HGI48_RS01415 at 316.719 kb on - strand, within HGI48_RS01415 at 316.809 kb on - strand, within HGI48_RS01415 at 316.993 kb on + strand, within HGI48_RS01415 at 316.994 kb on - strand, within HGI48_RS01415 at 316.994 kb on - strand, within HGI48_RS01415 at 317.003 kb on + strand, within HGI48_RS01415 at 317.003 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.035 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand, within HGI48_RS01415 at 317.048 kb on + strand at 317.048 kb on + strand, within HGI48_RS01415 at 317.118 kb on - strand at 317.118 kb on - strand, within HGI48_RS01415 at 317.123 kb on + strand, within HGI48_RS01415 at 317.123 kb on + strand, within HGI48_RS01415 at 317.124 kb on - strand, within HGI48_RS01415 at 317.192 kb on - strand, within HGI48_RS01415 at 317.306 kb on - strand, within HGI48_RS01415 at 317.306 kb on - strand, within HGI48_RS01415 at 317.317 kb on + strand, within HGI48_RS01415 at 317.317 kb on + strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415 at 317.318 kb on - strand, within HGI48_RS01415
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 314,873 + -0.5 314,873 + +0.4 314,873 + +0.1 314,873 + +1.5 314,874 - +0.3 314,874 - +0.7 314,956 + -1.5 314,957 - -0.2 314,986 - -0.7 314,997 + -0.1 315,245 - +1.1 315,292 + +1.1 315,292 + +0.5 315,293 - HGI48_RS01405 0.62 -0.0 315,293 - +0.5 315,297 + HGI48_RS01405 0.62 -1.5 315,297 + HGI48_RS01405 0.62 -2.5 315,298 - HGI48_RS01405 0.63 -0.2 315,324 + HGI48_RS01405 0.68 -0.5 315,324 + HGI48_RS01405 0.68 -0.7 315,324 + HGI48_RS01405 0.68 -1.0 315,324 + HGI48_RS01405 0.68 -0.5 315,324 + +1.5 315,324 + +1.1 315,324 + HGI48_RS01405 0.68 -1.2 315,324 + HGI48_RS01405 0.68 +0.4 315,325 - HGI48_RS01405 0.68 -0.8 315,325 - HGI48_RS01405 0.68 -1.0 315,325 - HGI48_RS01405 0.68 -0.5 315,325 - +2.4 315,325 - HGI48_RS01405 0.68 -0.6 315,325 - +0.5 315,328 + HGI48_RS01405 0.69 -0.9 315,462 + +0.5 315,462 + -0.4 315,462 + -1.5 315,463 - +1.5 315,463 - +2.3 315,463 - +0.1 315,465 + -0.1 315,465 + +0.1 315,465 + +1.1 315,465 + -1.5 315,465 + +0.4 315,465 + -0.2 315,465 + +0.1 315,469 + -0.6 315,469 + +0.1 315,469 + -0.2 315,469 + +0.1 315,469 + +1.1 315,469 + -0.8 315,469 + -0.5 315,469 + -0.3 315,469 + +0.4 315,469 + +1.1 315,469 + -2.0 315,469 + -0.5 315,470 - -1.3 315,470 - -0.5 315,470 - -0.3 315,470 - -0.9 315,470 - +0.1 315,470 - +0.5 315,470 - -0.5 315,470 - +0.0 315,470 - +0.9 315,470 - -0.0 315,473 + +1.5 315,473 + -1.2 315,473 + -0.3 315,474 - +0.9 315,474 - +0.4 315,474 - +1.5 315,506 + +0.8 315,507 - -1.0 315,535 - -0.3 315,538 - -1.0 315,568 + +0.3 315,568 + +0.1 315,568 + +1.1 315,569 - -2.0 315,569 - +0.9 315,569 - -0.3 315,569 - +0.5 315,569 - -0.7 315,569 - -0.6 315,597 + +0.1 315,598 - +0.1 315,598 - -0.9 315,731 + -1.1 315,731 + +1.1 315,731 + -0.5 315,731 + +0.7 315,731 + -0.1 315,731 + +2.5 315,731 + -0.0 315,731 + +0.5 315,731 + -0.9 315,732 - -1.2 315,732 - +0.1 315,732 - +2.4 315,732 - +0.1 315,732 - -0.2 315,733 + -0.9 315,733 + +1.1 315,733 + -0.3 315,734 - -0.5 315,734 - +0.3 315,761 + +0.3 315,776 + +0.5 315,776 + +0.5 315,777 - -1.2 315,777 - -0.1 315,777 - -2.3 315,777 - -0.7 315,777 - -1.2 315,777 - +0.9 315,779 + -0.3 315,806 + -1.7 316,255 + HGI48_RS01410 0.87 +1.4 316,255 + HGI48_RS01410 0.87 -1.0 316,255 + HGI48_RS01410 0.87 -1.9 316,255 + HGI48_RS01410 0.87 -1.9 316,256 - HGI48_RS01410 0.87 -1.9 316,340 + -0.0 316,340 + +1.3 316,400 - +0.4 316,416 + +0.9 316,416 + +0.1 316,416 + -1.8 316,416 + +0.4 316,416 + -1.5 316,417 - -0.5 316,417 - +0.7 316,417 - -0.5 316,427 - -1.2 316,438 - -0.4 316,438 - -1.2 316,482 + +2.1 316,482 + +1.1 316,482 + +0.4 316,483 - +0.2 316,483 - +0.3 316,498 + +0.2 316,524 + -1.0 316,524 + -0.8 316,525 - -0.9 316,715 + HGI48_RS01415 0.15 +0.9 316,716 - HGI48_RS01415 0.15 +1.7 316,718 + HGI48_RS01415 0.15 -2.3 316,719 - HGI48_RS01415 0.15 +2.0 316,809 - HGI48_RS01415 0.22 +0.9 316,993 + HGI48_RS01415 0.35 +1.1 316,994 - HGI48_RS01415 0.36 -0.1 316,994 - HGI48_RS01415 0.36 -0.4 317,003 + HGI48_RS01415 0.36 -0.1 317,003 + HGI48_RS01415 0.36 -0.1 317,035 + HGI48_RS01415 0.39 +1.5 317,035 + HGI48_RS01415 0.39 -0.6 317,035 + HGI48_RS01415 0.39 +0.3 317,035 + HGI48_RS01415 0.39 +0.1 317,048 + HGI48_RS01415 0.40 +0.6 317,048 + HGI48_RS01415 0.40 +0.4 317,048 + +2.1 317,048 + HGI48_RS01415 0.40 -1.5 317,118 - +1.9 317,118 - HGI48_RS01415 0.45 -0.9 317,123 + HGI48_RS01415 0.45 +0.9 317,123 + HGI48_RS01415 0.45 +0.2 317,124 - HGI48_RS01415 0.45 -0.5 317,192 - HGI48_RS01415 0.50 +0.0 317,306 - HGI48_RS01415 0.59 -0.5 317,306 - HGI48_RS01415 0.59 -1.7 317,317 + HGI48_RS01415 0.60 +0.0 317,317 + HGI48_RS01415 0.60 -0.9 317,318 - HGI48_RS01415 0.60 -1.2 317,318 - HGI48_RS01415 0.60 +0.1 317,318 - HGI48_RS01415 0.60 -1.5
Or see this region's nucleotide sequence