Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS00320

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS00315 and HGI48_RS00320 are separated by 74 nucleotidesHGI48_RS00320 and HGI48_RS00325 overlap by 23 nucleotides HGI48_RS00315: HGI48_RS00315 - D-xylose ABC transporter substrate-binding protein, at 81,833 to 82,828 _RS00315 HGI48_RS00320: HGI48_RS00320 - xylose ABC transporter ATP-binding protein, at 82,903 to 84,444 _RS00320 HGI48_RS00325: HGI48_RS00325 - sugar ABC transporter permease, at 84,422 to 85,606 _RS00325 Position (kb) 82 83 84 85Strain fitness (log2 ratio) -2 -1 0 1 2 3at 81.910 kb on + strandat 81.911 kb on - strandat 81.967 kb on + strand, within HGI48_RS00315at 81.967 kb on + strand, within HGI48_RS00315at 81.968 kb on - strand, within HGI48_RS00315at 82.060 kb on + strand, within HGI48_RS00315at 82.061 kb on - strand, within HGI48_RS00315at 82.100 kb on + strand, within HGI48_RS00315at 82.101 kb on - strand, within HGI48_RS00315at 82.101 kb on - strand, within HGI48_RS00315at 82.102 kb on + strand, within HGI48_RS00315at 82.102 kb on + strand, within HGI48_RS00315at 82.116 kb on + strand, within HGI48_RS00315at 82.121 kb on - strand, within HGI48_RS00315at 82.167 kb on - strand, within HGI48_RS00315at 82.180 kb on + strand, within HGI48_RS00315at 82.181 kb on - strand, within HGI48_RS00315at 82.181 kb on - strand, within HGI48_RS00315at 82.181 kb on - strandat 82.248 kb on - strand, within HGI48_RS00315at 82.278 kb on - strand, within HGI48_RS00315at 82.309 kb on + strand, within HGI48_RS00315at 82.348 kb on - strandat 82.348 kb on - strand, within HGI48_RS00315at 82.622 kb on + strand, within HGI48_RS00315at 82.622 kb on + strand, within HGI48_RS00315at 82.623 kb on - strand, within HGI48_RS00315at 82.623 kb on - strandat 82.623 kb on - strand, within HGI48_RS00315at 82.623 kb on - strand, within HGI48_RS00315at 82.819 kb on + strandat 82.820 kb on - strandat 82.823 kb on + strandat 82.823 kb on + strandat 82.823 kb on + strandat 82.823 kb on + strandat 82.823 kb on + strandat 82.823 kb on + strandat 82.823 kb on + strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.824 kb on - strandat 82.903 kb on - strandat 82.997 kb on + strandat 82.997 kb on + strandat 82.997 kb on + strandat 82.998 kb on - strandat 82.998 kb on - strandat 82.998 kb on - strandat 83.062 kb on + strand, within HGI48_RS00320at 83.077 kb on + strand, within HGI48_RS00320at 83.077 kb on + strand, within HGI48_RS00320at 83.078 kb on - strand, within HGI48_RS00320at 83.078 kb on - strand, within HGI48_RS00320at 83.248 kb on + strand, within HGI48_RS00320at 83.248 kb on + strand, within HGI48_RS00320at 83.260 kb on + strand, within HGI48_RS00320at 83.260 kb on + strand, within HGI48_RS00320at 83.260 kb on + strand, within HGI48_RS00320at 83.260 kb on + strand, within HGI48_RS00320at 83.260 kb on + strand, within HGI48_RS00320at 83.260 kb on + strand, within HGI48_RS00320at 83.261 kb on - strand, within HGI48_RS00320at 83.261 kb on - strand, within HGI48_RS00320at 83.261 kb on - strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.491 kb on + strand, within HGI48_RS00320at 83.492 kb on - strand, within HGI48_RS00320at 83.492 kb on - strand, within HGI48_RS00320at 83.492 kb on - strandat 83.492 kb on - strandat 83.492 kb on - strandat 83.492 kb on - strand, within HGI48_RS00320at 83.492 kb on - strand, within HGI48_RS00320at 83.492 kb on - strand, within HGI48_RS00320at 83.492 kb on - strand, within HGI48_RS00320at 83.603 kb on + strand, within HGI48_RS00320at 83.603 kb on + strand, within HGI48_RS00320at 83.604 kb on - strand, within HGI48_RS00320at 83.676 kb on - strand, within HGI48_RS00320at 83.721 kb on + strand, within HGI48_RS00320at 83.721 kb on + strand, within HGI48_RS00320at 83.721 kb on + strand, within HGI48_RS00320at 83.722 kb on - strand, within HGI48_RS00320at 83.722 kb on - strand, within HGI48_RS00320at 83.741 kb on + strand, within HGI48_RS00320at 83.741 kb on + strand, within HGI48_RS00320at 83.741 kb on + strand, within HGI48_RS00320at 83.741 kb on + strandat 83.741 kb on + strand, within HGI48_RS00320at 83.741 kb on + strand, within HGI48_RS00320at 83.742 kb on - strand, within HGI48_RS00320at 83.742 kb on - strand, within HGI48_RS00320at 83.922 kb on + strand, within HGI48_RS00320at 83.923 kb on - strand, within HGI48_RS00320at 83.923 kb on - strand, within HGI48_RS00320at 84.236 kb on - strand, within HGI48_RS00320at 84.421 kb on + strandat 84.421 kb on + strandat 84.421 kb on + strandat 84.421 kb on + strandat 84.422 kb on - strandat 84.422 kb on - strandat 84.422 kb on - strandat 84.422 kb on - strandat 84.448 kb on + strandat 84.449 kb on - strandat 84.658 kb on + strand, within HGI48_RS00325at 84.658 kb on + strand, within HGI48_RS00325at 84.658 kb on + strand, within HGI48_RS00325at 84.738 kb on - strand, within HGI48_RS00325at 84.886 kb on - strand, within HGI48_RS00325at 84.950 kb on + strand, within HGI48_RS00325at 84.950 kb on + strand, within HGI48_RS00325at 84.950 kb on + strand, within HGI48_RS00325at 85.121 kb on + strandat 85.121 kb on + strand, within HGI48_RS00325at 85.121 kb on + strand, within HGI48_RS00325at 85.121 kb on + strand, within HGI48_RS00325at 85.122 kb on - strand, within HGI48_RS00325at 85.122 kb on - strandat 85.122 kb on - strand, within HGI48_RS00325at 85.122 kb on - strand, within HGI48_RS00325at 85.122 kb on - strand, within HGI48_RS00325at 85.122 kb on - strand, within HGI48_RS00325at 85.122 kb on - strandat 85.122 kb on - strand, within HGI48_RS00325at 85.122 kb on - strand, within HGI48_RS00325at 85.136 kb on + strand, within HGI48_RS00325at 85.229 kb on + strand, within HGI48_RS00325

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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81,910 + +0.8
81,911 - +0.6
81,967 + HGI48_RS00315 0.13 +0.7
81,967 + HGI48_RS00315 0.13 +0.4
81,968 - HGI48_RS00315 0.14 -0.0
82,060 + HGI48_RS00315 0.23 +0.7
82,061 - HGI48_RS00315 0.23 +0.0
82,100 + HGI48_RS00315 0.27 +1.1
82,101 - HGI48_RS00315 0.27 -0.3
82,101 - HGI48_RS00315 0.27 +0.4
82,102 + HGI48_RS00315 0.27 -0.3
82,102 + HGI48_RS00315 0.27 -0.1
82,116 + HGI48_RS00315 0.28 +0.5
82,121 - HGI48_RS00315 0.29 -0.2
82,167 - HGI48_RS00315 0.34 -0.3
82,180 + HGI48_RS00315 0.35 +0.1
82,181 - HGI48_RS00315 0.35 -0.9
82,181 - HGI48_RS00315 0.35 -1.7
82,181 - +0.5
82,248 - HGI48_RS00315 0.42 -0.0
82,278 - HGI48_RS00315 0.45 +0.9
82,309 + HGI48_RS00315 0.48 -1.7
82,348 - +1.1
82,348 - HGI48_RS00315 0.52 -0.2
82,622 + HGI48_RS00315 0.79 +1.1
82,622 + HGI48_RS00315 0.79 +0.0
82,623 - HGI48_RS00315 0.79 -0.3
82,623 - +0.5
82,623 - HGI48_RS00315 0.79 +0.6
82,623 - HGI48_RS00315 0.79 -1.3
82,819 + -0.5
82,820 - -1.0
82,823 + +1.1
82,823 + -0.5
82,823 + -1.2
82,823 + +0.5
82,823 + +0.8
82,823 + +0.4
82,823 + -0.5
82,824 - -0.0
82,824 - +1.1
82,824 - +0.1
82,824 - +0.5
82,824 - -0.7
82,824 - -0.6
82,824 - -0.4
82,824 - -0.2
82,824 - +1.1
82,824 - -2.0
82,903 - +0.1
82,997 + +0.4
82,997 + -0.7
82,997 + -0.2
82,998 - +0.6
82,998 - -0.5
82,998 - -1.5
83,062 + HGI48_RS00320 0.10 -1.3
83,077 + HGI48_RS00320 0.11 -0.5
83,077 + HGI48_RS00320 0.11 -0.3
83,078 - HGI48_RS00320 0.11 +0.5
83,078 - HGI48_RS00320 0.11 -1.2
83,248 + HGI48_RS00320 0.22 +0.8
83,248 + HGI48_RS00320 0.22 -0.7
83,260 + HGI48_RS00320 0.23 +1.1
83,260 + HGI48_RS00320 0.23 -0.3
83,260 + HGI48_RS00320 0.23 +1.0
83,260 + HGI48_RS00320 0.23 +0.7
83,260 + HGI48_RS00320 0.23 -0.9
83,260 + HGI48_RS00320 0.23 -0.2
83,261 - HGI48_RS00320 0.23 +0.5
83,261 - HGI48_RS00320 0.23 +0.1
83,261 - HGI48_RS00320 0.23 -0.9
83,491 + HGI48_RS00320 0.38 -0.5
83,491 + HGI48_RS00320 0.38 +0.1
83,491 + HGI48_RS00320 0.38 -0.2
83,491 + HGI48_RS00320 0.38 +0.7
83,491 + HGI48_RS00320 0.38 -0.1
83,491 + HGI48_RS00320 0.38 +0.7
83,491 + HGI48_RS00320 0.38 -0.6
83,492 - HGI48_RS00320 0.38 -2.7
83,492 - HGI48_RS00320 0.38 -2.5
83,492 - +1.1
83,492 - +1.1
83,492 - +0.5
83,492 - HGI48_RS00320 0.38 +0.3
83,492 - HGI48_RS00320 0.38 +0.2
83,492 - HGI48_RS00320 0.38 -0.8
83,492 - HGI48_RS00320 0.38 -0.4
83,603 + HGI48_RS00320 0.45 +0.1
83,603 + HGI48_RS00320 0.45 -2.2
83,604 - HGI48_RS00320 0.45 +0.1
83,676 - HGI48_RS00320 0.50 -0.4
83,721 + HGI48_RS00320 0.53 +0.1
83,721 + HGI48_RS00320 0.53 -0.7
83,721 + HGI48_RS00320 0.53 +0.1
83,722 - HGI48_RS00320 0.53 -1.3
83,722 - HGI48_RS00320 0.53 -0.5
83,741 + HGI48_RS00320 0.54 -1.0
83,741 + HGI48_RS00320 0.54 -2.2
83,741 + HGI48_RS00320 0.54 +0.3
83,741 + +1.1
83,741 + HGI48_RS00320 0.54 -1.5
83,741 + HGI48_RS00320 0.54 +1.1
83,742 - HGI48_RS00320 0.54 +1.4
83,742 - HGI48_RS00320 0.54 -0.5
83,922 + HGI48_RS00320 0.66 -0.2
83,923 - HGI48_RS00320 0.66 -1.0
83,923 - HGI48_RS00320 0.66 +0.1
84,236 - HGI48_RS00320 0.86 +0.1
84,421 + +0.2
84,421 + -0.7
84,421 + -0.3
84,421 + -1.0
84,422 - +0.2
84,422 - +1.6
84,422 - -0.5
84,422 - -1.2
84,448 + +0.9
84,449 - +1.1
84,658 + HGI48_RS00325 0.20 +0.1
84,658 + HGI48_RS00325 0.20 -0.1
84,658 + HGI48_RS00325 0.20 +0.0
84,738 - HGI48_RS00325 0.27 +0.6
84,886 - HGI48_RS00325 0.39 +0.1
84,950 + HGI48_RS00325 0.45 +0.1
84,950 + HGI48_RS00325 0.45 -1.7
84,950 + HGI48_RS00325 0.45 +0.7
85,121 + +2.9
85,121 + HGI48_RS00325 0.59 -1.1
85,121 + HGI48_RS00325 0.59 -0.3
85,121 + HGI48_RS00325 0.59 -0.3
85,122 - HGI48_RS00325 0.59 -0.2
85,122 - +0.1
85,122 - HGI48_RS00325 0.59 +0.1
85,122 - HGI48_RS00325 0.59 -0.1
85,122 - HGI48_RS00325 0.59 +0.9
85,122 - HGI48_RS00325 0.59 -1.9
85,122 - +1.1
85,122 - HGI48_RS00325 0.59 +0.5
85,122 - HGI48_RS00325 0.59 +0.1
85,136 + HGI48_RS00325 0.60 +0.0
85,229 + HGI48_RS00325 0.68 +0.4

Or see this region's nucleotide sequence