Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21685

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,837,230	+				+0.1
4,837,230	+				-0.8
4,837,281	+		HGI48_RS21680	0.14	+0.8
4,837,281	+		HGI48_RS21680	0.14	+0.2
4,837,281	+		HGI48_RS21680	0.14	-1.1
4,837,281	+		HGI48_RS21680	0.14	+2.0
4,837,281	+		HGI48_RS21680	0.14	+1.5
4,837,281	+		HGI48_RS21680	0.14	-1.1
4,837,281	+				+2.6
4,837,282	-		HGI48_RS21680	0.14	+1.2
4,837,282	-		HGI48_RS21680	0.14	-1.6
4,837,282	-		HGI48_RS21680	0.14	-0.8
4,837,282	-		HGI48_RS21680	0.14	+0.9
4,837,282	-				-0.3
4,837,282	-		HGI48_RS21680	0.14	-1.3
4,837,282	-		HGI48_RS21680	0.14	-0.6
4,837,284	+		HGI48_RS21680	0.14	+2.4
4,837,284	+		HGI48_RS21680	0.14	-0.8
4,837,284	+		HGI48_RS21680	0.14	-1.6
4,837,285	-		HGI48_RS21680	0.14	-1.8
4,837,300	+		HGI48_RS21680	0.16	+1.4
4,837,300	+				-0.3
4,837,300	+		HGI48_RS21680	0.16	-1.9
4,837,301	-		HGI48_RS21680	0.16	+2.9
4,837,305	-		HGI48_RS21680	0.16	+1.2
4,837,336	+		HGI48_RS21680	0.19	-0.1
4,837,337	-				+0.2
4,837,354	+		HGI48_RS21680	0.21	+1.3
4,837,464	+				-0.3
4,837,464	+		HGI48_RS21680	0.31	-2.1
4,837,465	-		HGI48_RS21680	0.31	-1.6
4,837,465	-		HGI48_RS21680	0.31	+1.2
4,837,465	-		HGI48_RS21680	0.31	-0.8
4,837,465	-		HGI48_RS21680	0.31	+4.6
4,837,465	-		HGI48_RS21680	0.31	+0.9
4,837,492	+		HGI48_RS21680	0.34	+1.8
4,837,552	+		HGI48_RS21680	0.39	-1.3
4,837,552	+		HGI48_RS21680	0.39	-1.1
4,837,552	+		HGI48_RS21680	0.39	-1.3
4,837,553	-		HGI48_RS21680	0.40	-1.1
4,837,553	-		HGI48_RS21680	0.40	-1.9
4,837,553	-		HGI48_RS21680	0.40	-1.3
4,837,553	-		HGI48_RS21680	0.40	+0.5
4,837,553	-		HGI48_RS21680	0.40	-1.3
4,837,553	-		HGI48_RS21680	0.40	-1.3
4,837,615	+		HGI48_RS21680	0.45	-1.3
4,837,615	+		HGI48_RS21680	0.45	+1.5
4,837,616	-		HGI48_RS21680	0.45	+0.9
4,837,617	+		HGI48_RS21680	0.46	-0.8
4,837,633	+		HGI48_RS21680	0.47	-0.3
4,837,634	-		HGI48_RS21680	0.47	+3.6
4,837,634	-		HGI48_RS21680	0.47	-1.3
4,837,642	+		HGI48_RS21680	0.48	-1.3
4,837,642	+				+4.7
4,837,642	+		HGI48_RS21680	0.48	+0.8
4,837,673	+		HGI48_RS21680	0.51	-2.7
4,837,674	-		HGI48_RS21680	0.51	-1.3
4,837,674	-		HGI48_RS21680	0.51	-2.1
4,837,677	-		HGI48_RS21680	0.51	-1.6
4,837,735	+		HGI48_RS21680	0.57	+1.1
4,837,735	+		HGI48_RS21680	0.57	-1.8
4,837,798	+		HGI48_RS21680	0.62	+0.6
4,837,798	+		HGI48_RS21680	0.62	-1.1
4,837,857	-				-0.3
4,837,927	+		HGI48_RS21680	0.75	+1.0
4,837,947	+		HGI48_RS21680	0.76	+2.0
4,837,947	+		HGI48_RS21680	0.76	-1.9
4,837,981	+		HGI48_RS21680	0.80	-1.6
4,837,981	+		HGI48_RS21680	0.80	-1.8
4,837,981	+		HGI48_RS21680	0.80	+2.4
4,837,982	-		HGI48_RS21680	0.80	-3.2
4,838,001	-				+1.7
4,838,001	-		HGI48_RS21680	0.81	+1.2
4,838,001	-		HGI48_RS21680	0.81	-2.8
4,838,002	+		HGI48_RS21680	0.82	-2.5
4,838,002	+		HGI48_RS21680	0.82	-0.3
4,838,002	+		HGI48_RS21680	0.82	+0.8
4,838,003	-		HGI48_RS21680	0.82	+0.6
4,838,003	-				-0.3
4,838,035	+		HGI48_RS21680	0.85	+2.2
4,838,035	+		HGI48_RS21680	0.85	-1.4
4,838,036	-		HGI48_RS21680	0.85	-1.8
4,838,036	-		HGI48_RS21680	0.85	-2.7
4,838,036	-		HGI48_RS21680	0.85	+0.6
4,838,036	-		HGI48_RS21680	0.85	+1.5
4,838,036	-		HGI48_RS21680	0.85	-2.3
4,838,036	-		HGI48_RS21680	0.85	-0.2
4,838,036	-				-0.3
4,838,049	+		HGI48_RS21680	0.86	-1.1
4,838,049	+		HGI48_RS21680	0.86	+0.8
4,838,049	+		HGI48_RS21680	0.86	-0.8
4,838,050	-		HGI48_RS21680	0.86	-1.3
4,838,050	-		HGI48_RS21680	0.86	-1.8
4,838,050	-		HGI48_RS21680	0.86	+4.9
4,838,175	+				-3.5
4,838,175	+				-0.2
4,838,175	+				+1.6
4,838,175	+				-1.1
4,838,175	+				+1.5
4,838,175	+				-1.1
4,838,175	+				+1.8
4,838,176	-				-1.6
4,838,176	-				+0.7
4,838,176	-				+4.2
4,838,176	-				+1.8
4,838,176	-				-1.8
4,838,176	-				-1.3
4,838,179	+				-0.3
4,838,179	+				+1.5
4,838,179	+				+2.1
4,838,179	+				-2.2
4,838,179	+				+0.2
4,838,179	+				+1.4
4,838,179	+				+1.2
4,838,179	+				-0.3
4,838,179	+				+2.0
4,838,179	+				+1.4
4,838,179	+				+1.1
4,838,179	+				-1.6
4,838,179	+				-2.8
4,838,179	+				+3.5
4,838,179	+				-0.8
4,838,179	+				-1.6
4,838,179	+				+1.4
4,838,179	+				+1.9
4,838,179	+				+0.8
4,838,180	-				+0.4
4,838,180	-				+1.3
4,838,180	-				+2.0
4,838,180	-				-1.9
4,838,180	-				-0.8
4,838,180	-				-2.2
4,838,180	-				+1.6
4,838,180	-				-1.2
4,838,180	-				-0.2
4,838,180	-				+0.8
4,838,180	-				+0.9
4,838,180	-				-1.1
4,838,180	-				+0.3
4,838,180	-				-0.8
4,838,180	-				-0.3
4,838,180	-				+3.7
4,838,180	-				+1.0
4,838,180	-				+0.5
4,838,180	-				-1.8
4,838,180	-				-2.1
4,838,180	-				-0.8
4,838,180	-				-1.3
4,838,180	-				-2.8
4,838,180	-				-0.8
4,838,180	-				-3.4
4,838,180	-				+2.3
4,838,180	-				-0.3
4,838,180	-				-2.3
4,838,180	-				-2.2
4,838,180	-				+2.7
4,838,185	+				-0.3
4,838,185	+				+2.0
4,838,186	-				-1.1
4,838,242	+				+3.2
4,838,243	-				-1.8
4,838,291	-				-1.3
4,838,401	+		HGI48_RS21685	0.11	-1.6
4,838,401	+		HGI48_RS21685	0.11	-1.6
4,838,401	+		HGI48_RS21685	0.11	+0.3
4,838,402	-		HGI48_RS21685	0.11	-2.2
4,838,402	-		HGI48_RS21685	0.11	+1.5
4,838,402	-				+0.2
4,838,442	+		HGI48_RS21685	0.14	+1.8
4,838,442	+		HGI48_RS21685	0.14	-2.7
4,838,442	+		HGI48_RS21685	0.14	+1.6
4,838,442	+		HGI48_RS21685	0.14	+3.2
4,838,443	-				+0.2
4,838,443	-		HGI48_RS21685	0.14	+1.5
4,838,506	+		HGI48_RS21685	0.17	+2.2
4,838,506	+		HGI48_RS21685	0.17	-1.3
4,838,507	-		HGI48_RS21685	0.17	-0.8
4,838,539	+		HGI48_RS21685	0.19	-0.8
4,838,539	+		HGI48_RS21685	0.19	+0.2
4,838,539	+		HGI48_RS21685	0.19	-3.0
4,838,540	-		HGI48_RS21685	0.19	+1.8
4,838,662	+				-0.3
4,838,663	-		HGI48_RS21685	0.26	+1.5
4,838,699	+		HGI48_RS21685	0.28	+0.4
4,838,699	+				+2.8
4,838,700	-		HGI48_RS21685	0.28	+1.3
4,838,702	+		HGI48_RS21685	0.28	+2.1
4,838,702	+		HGI48_RS21685	0.28	+2.2
4,838,702	+		HGI48_RS21685	0.28	+1.2
4,838,703	-		HGI48_RS21685	0.28	-1.9
4,838,703	-				+1.2
4,838,703	-		HGI48_RS21685	0.28	-2.7
4,838,769	+		HGI48_RS21685	0.32	-1.6
4,838,769	+		HGI48_RS21685	0.32	-3.3
4,838,769	+		HGI48_RS21685	0.32	-0.2
4,838,769	+		HGI48_RS21685	0.32	+1.1
4,838,770	-		HGI48_RS21685	0.32	-2.8
4,838,832	+		HGI48_RS21685	0.36	-2.5
4,838,832	+		HGI48_RS21685	0.36	-1.3
4,838,832	+		HGI48_RS21685	0.36	-2.9
4,838,832	+		HGI48_RS21685	0.36	-2.3
4,838,832	+		HGI48_RS21685	0.36	-0.8
4,838,832	+		HGI48_RS21685	0.36	+0.2
4,838,832	+		HGI48_RS21685	0.36	-1.3
4,838,832	+		HGI48_RS21685	0.36	-1.3
4,838,833	-		HGI48_RS21685	0.36	+0.4
4,838,869	+		HGI48_RS21685	0.38	-3.4
4,838,870	-		HGI48_RS21685	0.38	+0.8
4,838,884	-		HGI48_RS21685	0.39	-0.8
4,838,884	-		HGI48_RS21685	0.39	-0.6
4,838,884	-				+1.2
4,838,897	+		HGI48_RS21685	0.39	-1.8
4,838,897	+		HGI48_RS21685	0.39	-0.2
4,838,897	+		HGI48_RS21685	0.39	+0.7
4,838,898	-		HGI48_RS21685	0.39	+0.7
4,838,924	+				+0.2
4,838,925	-		HGI48_RS21685	0.41	+1.0
4,838,925	-		HGI48_RS21685	0.41	-2.3
4,838,979	-		HGI48_RS21685	0.44	+0.4
4,838,985	+		HGI48_RS21685	0.44	+0.2
4,838,986	-		HGI48_RS21685	0.44	-0.8
4,839,001	+				+2.8
4,839,021	+		HGI48_RS21685	0.46	-0.3
4,839,022	-		HGI48_RS21685	0.46	+1.0
4,839,022	-		HGI48_RS21685	0.46	-2.7
4,839,024	+		HGI48_RS21685	0.46	+0.2
4,839,024	+		HGI48_RS21685	0.46	+2.0
4,839,024	+		HGI48_RS21685	0.46	-2.3
4,839,025	-		HGI48_RS21685	0.46	+0.5
4,839,025	-		HGI48_RS21685	0.46	-3.3
4,839,053	+		HGI48_RS21685	0.48	+0.4
4,839,053	+		HGI48_RS21685	0.48	+3.3
4,839,053	+		HGI48_RS21685	0.48	+0.9
4,839,053	+		HGI48_RS21685	0.48	+0.7
4,839,053	+		HGI48_RS21685	0.48	+2.8
4,839,054	-		HGI48_RS21685	0.48	-1.1
4,839,054	-		HGI48_RS21685	0.48	-0.9
4,839,054	-		HGI48_RS21685	0.48	-1.1
4,839,054	-		HGI48_RS21685	0.48	-1.8
4,839,105	+		HGI48_RS21685	0.51	-3.5
4,839,105	+		HGI48_RS21685	0.51	-1.3
4,839,106	-				+2.5
4,839,106	-		HGI48_RS21685	0.51	-1.3
4,839,106	-		HGI48_RS21685	0.51	+1.0
4,839,106	-		HGI48_RS21685	0.51	-0.8
4,839,109	-		HGI48_RS21685	0.51	+1.0
4,839,161	+		HGI48_RS21685	0.54	+0.5
4,839,161	+		HGI48_RS21685	0.54	-0.8
4,839,161	+		HGI48_RS21685	0.54	-0.8
4,839,161	+		HGI48_RS21685	0.54	-0.8
4,839,161	+		HGI48_RS21685	0.54	+1.2
4,839,162	-		HGI48_RS21685	0.54	-1.3
4,839,167	-		HGI48_RS21685	0.54	+1.0
4,839,335	+		HGI48_RS21685	0.64	-2.1
4,839,335	+		HGI48_RS21685	0.64	-1.3
4,839,336	-		HGI48_RS21685	0.64	-1.3
4,839,336	-		HGI48_RS21685	0.64	-0.6
4,839,340	+		HGI48_RS21685	0.64	-1.1
4,839,341	-		HGI48_RS21685	0.64	+1.1
4,839,341	-		HGI48_RS21685	0.64	-1.8
4,839,414	-		HGI48_RS21685	0.68	-0.8
4,839,414	-		HGI48_RS21685	0.68	+1.6
4,839,441	-		HGI48_RS21685	0.70	-0.8
4,839,507	+		HGI48_RS21685	0.74	-0.8
4,839,507	+		HGI48_RS21685	0.74	-2.1
4,839,507	+		HGI48_RS21685	0.74	+0.6
4,839,507	+		HGI48_RS21685	0.74	-0.8
4,839,507	+		HGI48_RS21685	0.74	+2.5
4,839,507	+		HGI48_RS21685	0.74	+2.2
4,839,507	+		HGI48_RS21685	0.74	-1.9
4,839,508	-		HGI48_RS21685	0.74	+1.2
4,839,508	-		HGI48_RS21685	0.74	+2.0
4,839,508	-		HGI48_RS21685	0.74	+2.0
4,839,508	-		HGI48_RS21685	0.74	+1.0
4,839,508	-		HGI48_RS21685	0.74	-1.8
4,839,553	+		HGI48_RS21685	0.76	-1.8
4,839,553	+		HGI48_RS21685	0.76	+2.2
4,839,554	-				+0.2
4,839,621	-		HGI48_RS21685	0.80	-1.1
4,839,621	-		HGI48_RS21685	0.80	-1.8
4,839,621	-		HGI48_RS21685	0.80	-0.4
4,839,684	+		HGI48_RS21685	0.84	+0.9
4,839,684	+		HGI48_RS21685	0.84	+2.1
4,839,685	-		HGI48_RS21685	0.84	-0.2
4,839,731	+		HGI48_RS21685	0.86	+2.2
4,839,731	+		HGI48_RS21685	0.86	-1.1
4,839,731	+		HGI48_RS21685	0.86	+0.6
4,839,732	-		HGI48_RS21685	0.86	+1.1
4,839,732	-		HGI48_RS21685	0.86	+1.2
4,839,817	+				+0.2
4,839,817	+				+2.4
4,839,818	-				+1.7
4,839,909	+				-0.8
4,839,965	+				-2.5
4,839,966	-				+0.1
4,840,032	+				-1.8
4,840,032	+				-1.1
4,840,032	+				-1.9
4,840,033	-				+0.3
4,840,033	-				-2.1
4,840,033	-				-3.0
4,840,036	+				+2.1
4,840,036	+				+0.0
4,840,355	+		HGI48_RS21690	0.25	-1.8
4,840,355	+		HGI48_RS21690	0.25	-1.6
4,840,555	-		HGI48_RS21690	0.39	+1.1
4,840,624	+		HGI48_RS21690	0.43	+1.6
4,840,626	+		HGI48_RS21690	0.43	-0.8
4,840,626	+		HGI48_RS21690	0.43	+1.6
4,840,628	+				+0.2
4,840,628	+		HGI48_RS21690	0.43	-1.1
4,840,628	+		HGI48_RS21690	0.43	-2.0
4,840,628	+		HGI48_RS21690	0.43	+0.7
4,840,628	+		HGI48_RS21690	0.43	-1.8
4,840,628	+		HGI48_RS21690	0.43	+1.6
4,840,628	+		HGI48_RS21690	0.43	-3.0
4,840,655	+		HGI48_RS21690	0.45	-0.8
4,840,655	+		HGI48_RS21690	0.45	+1.2
4,840,913	+		HGI48_RS21690	0.62	+2.2
4,840,941	+		HGI48_RS21690	0.64	-1.3
4,840,941	+		HGI48_RS21690	0.64	-0.4
4,840,945	-		HGI48_RS21690	0.64	+1.4
4,840,950	+		HGI48_RS21690	0.65	-1.6