Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS21545

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,806,842	+		HGI48_RS21540	0.76	-1.8
4,806,842	+		HGI48_RS21540	0.76	-1.6
4,806,842	+		HGI48_RS21540	0.76	+0.9
4,806,842	+		HGI48_RS21540	0.76	-0.8
4,806,842	+		HGI48_RS21540	0.76	-1.1
4,806,842	+		HGI48_RS21540	0.76	-1.6
4,806,843	-		HGI48_RS21540	0.76	-1.9
4,806,843	-		HGI48_RS21540	0.76	-2.6
4,806,843	-		HGI48_RS21540	0.76	-0.8
4,806,843	-		HGI48_RS21540	0.76	-1.6
4,806,843	-		HGI48_RS21540	0.76	-1.6
4,806,995	+		HGI48_RS21540	0.83	+0.7
4,806,995	+		HGI48_RS21540	0.83	-1.6
4,806,996	-		HGI48_RS21540	0.83	-1.6
4,806,996	-				-0.3
4,807,066	+		HGI48_RS21540	0.86	-1.3
4,807,066	+		HGI48_RS21540	0.86	-1.3
4,807,238	+				+1.1
4,807,239	-				+1.6
4,807,282	-				-2.7
4,807,293	+				-0.2
4,807,293	+				+2.1
4,807,293	+				-0.8
4,807,323	+				+0.2
4,807,323	+				-3.5
4,807,324	-				+0.2
4,807,324	-				-1.8
4,807,327	+				-0.2
4,807,327	+				+0.9
4,807,328	-				-3.7
4,807,328	-				-1.1
4,807,329	+				-2.3
4,807,329	+				+3.0
4,807,329	+				+2.6
4,807,329	+				+0.8
4,807,329	+				-2.5
4,807,330	-				-2.5
4,807,346	-				-0.8
4,807,384	+				+2.0
4,807,481	-				-1.6
4,807,499	+				-1.6
4,807,500	-				-1.6
4,807,500	-				-0.5
4,807,541	-				-2.1
4,807,544	+				+0.1
4,807,544	+				-2.1
4,807,545	-				-1.6
4,807,545	-				+0.8
4,807,552	+				-1.8
4,807,555	-				-0.8
4,807,555	-				+6.4
4,807,555	-				-1.1
4,807,555	-				-2.2
4,807,555	-				+3.9
4,807,638	+				-1.6
4,807,648	+				+2.2
4,807,668	-				-1.9
4,807,668	-				+2.0
4,807,668	-				+2.0
4,807,668	-				-1.1
4,807,668	-				-0.3
4,807,694	+				-1.1
4,807,694	+				-0.8
4,807,695	-				-2.2
4,807,695	-				-0.1
4,807,705	+				+1.1
4,807,705	+				+1.0
4,807,726	+				+1.9
4,807,726	+				-1.3
4,807,727	-				-0.2
4,807,728	+				+2.1
4,807,728	+				+3.6
4,807,728	+				-1.6
4,807,729	-				-2.1
4,807,729	-				-0.2
4,807,766	+				-2.5
4,807,766	+				+1.4
4,807,766	+				-2.6
4,807,766	+				-2.6
4,807,767	-				-2.9
4,807,770	+				-1.8
4,807,797	+				-1.8
4,807,797	+				+0.2
4,807,797	+				-1.1
4,807,797	+				-0.8
4,807,797	+				-1.8
4,807,798	-				-2.3
4,807,798	-				+2.0
4,807,798	-				-1.1
4,807,798	-				-1.1
4,807,798	-				-1.9
4,807,798	-				-3.0
4,807,812	-				-1.3
4,807,822	-				-2.5
4,807,825	+				-2.1
4,807,825	+				+0.7
4,807,826	-				-1.9
4,807,887	+				-1.6
4,807,900	+				+3.0
4,807,906	+				-0.8
4,807,906	+				-0.4
4,807,906	+				+2.2
4,807,907	-				-0.2
4,807,907	-				-2.2
4,807,907	-				-0.2
4,807,907	-				-2.1
4,807,938	-				-1.3
4,807,943	+				+2.2
4,807,959	-				+0.1
4,807,994	+		HGI48_RS21545	0.11	+1.2
4,807,994	+		HGI48_RS21545	0.11	-1.6
4,807,994	+		HGI48_RS21545	0.11	+1.1
4,807,995	-		HGI48_RS21545	0.11	+1.0
4,807,995	-		HGI48_RS21545	0.11	-2.5
4,807,995	-		HGI48_RS21545	0.11	-0.8
4,807,995	-				-0.3
4,808,051	+		HGI48_RS21545	0.15	+1.8
4,808,051	+		HGI48_RS21545	0.15	+2.2
4,808,051	+		HGI48_RS21545	0.15	+1.0
4,808,052	-		HGI48_RS21545	0.15	-0.2
4,808,052	-		HGI48_RS21545	0.15	-1.3
4,808,054	+		HGI48_RS21545	0.15	+3.0
4,808,055	-		HGI48_RS21545	0.15	-2.5
4,808,176	+		HGI48_RS21545	0.24	-1.3
4,808,177	-		HGI48_RS21545	0.24	-0.2
4,808,177	-		HGI48_RS21545	0.24	-2.3
4,808,184	+		HGI48_RS21545	0.24	+0.5
4,808,185	-		HGI48_RS21545	0.25	+0.2
4,808,196	+		HGI48_RS21545	0.25	+2.0
4,808,196	+				-0.3
4,808,197	-		HGI48_RS21545	0.25	-2.8
4,808,197	-		HGI48_RS21545	0.25	+0.0
4,808,197	-		HGI48_RS21545	0.25	-1.8
4,808,197	-		HGI48_RS21545	0.25	-2.1
4,808,200	+		HGI48_RS21545	0.26	+2.9
4,808,200	+		HGI48_RS21545	0.26	+0.4
4,808,200	+		HGI48_RS21545	0.26	-0.8
4,808,200	+		HGI48_RS21545	0.26	-3.0
4,808,200	+		HGI48_RS21545	0.26	-2.6
4,808,200	+		HGI48_RS21545	0.26	+2.6
4,808,200	+		HGI48_RS21545	0.26	-1.1
4,808,200	+		HGI48_RS21545	0.26	-1.6
4,808,200	+		HGI48_RS21545	0.26	+1.4
4,808,201	-		HGI48_RS21545	0.26	+1.2
4,808,201	-		HGI48_RS21545	0.26	-2.6
4,808,201	-		HGI48_RS21545	0.26	-1.1
4,808,201	-		HGI48_RS21545	0.26	-2.5
4,808,201	-		HGI48_RS21545	0.26	+1.2
4,808,201	-		HGI48_RS21545	0.26	+1.5
4,808,201	-		HGI48_RS21545	0.26	-1.6
4,808,201	-		HGI48_RS21545	0.26	-0.1
4,808,201	-		HGI48_RS21545	0.26	+2.4
4,808,201	-		HGI48_RS21545	0.26	+1.1
4,808,201	-				-0.3
4,808,201	-		HGI48_RS21545	0.26	-0.8
4,808,201	-		HGI48_RS21545	0.26	-1.9
4,808,202	+		HGI48_RS21545	0.26	-3.2
4,808,202	+		HGI48_RS21545	0.26	-0.8
4,808,202	+		HGI48_RS21545	0.26	-0.2
4,808,202	+		HGI48_RS21545	0.26	-1.1
4,808,243	+				+0.2
4,808,244	-		HGI48_RS21545	0.29	-1.6
4,808,244	-		HGI48_RS21545	0.29	+0.7
4,808,313	+		HGI48_RS21545	0.33	-0.8
4,808,313	+		HGI48_RS21545	0.33	-1.2
4,808,313	+		HGI48_RS21545	0.33	+2.2
4,808,313	+		HGI48_RS21545	0.33	-1.8
4,808,314	-		HGI48_RS21545	0.33	+1.7
4,808,314	-		HGI48_RS21545	0.33	-1.1
4,808,314	-		HGI48_RS21545	0.33	-0.3
4,808,314	-		HGI48_RS21545	0.33	-2.3
4,808,314	-		HGI48_RS21545	0.33	+0.6
4,808,314	-		HGI48_RS21545	0.33	+1.1
4,808,314	-				+0.2
4,808,314	-		HGI48_RS21545	0.33	-1.6
4,808,399	+		HGI48_RS21545	0.39	-0.6
4,808,399	+		HGI48_RS21545	0.39	+0.9
4,808,399	+		HGI48_RS21545	0.39	-1.3
4,808,399	+		HGI48_RS21545	0.39	-2.2
4,808,400	-		HGI48_RS21545	0.39	-1.8
4,808,400	-				+3.0
4,808,400	-		HGI48_RS21545	0.39	-0.9
4,808,446	+		HGI48_RS21545	0.43	+2.9
4,808,463	+		HGI48_RS21545	0.44	+1.8
4,808,463	+		HGI48_RS21545	0.44	+3.6
4,808,463	+		HGI48_RS21545	0.44	-0.8
4,808,511	+		HGI48_RS21545	0.47	-1.3
4,808,511	+				+0.2
4,808,512	-				+0.2
4,808,573	+		HGI48_RS21545	0.51	-2.9
4,808,574	-		HGI48_RS21545	0.52	+0.8
4,808,574	-		HGI48_RS21545	0.52	+1.5
4,808,627	+		HGI48_RS21545	0.55	+0.4
4,808,638	+		HGI48_RS21545	0.56	-0.1
4,808,698	+		HGI48_RS21545	0.60	+0.9
4,808,698	+		HGI48_RS21545	0.60	+2.5
4,808,698	+		HGI48_RS21545	0.60	-1.6
4,808,698	+		HGI48_RS21545	0.60	-1.1
4,808,699	-		HGI48_RS21545	0.60	+1.4
4,808,699	-				-0.3
4,808,699	-		HGI48_RS21545	0.60	-2.0
4,808,699	-		HGI48_RS21545	0.60	+0.1
4,808,701	+		HGI48_RS21545	0.60	-1.9
4,808,771	-				-0.3
4,808,771	-		HGI48_RS21545	0.65	+0.9
4,808,771	-		HGI48_RS21545	0.65	-0.8
4,808,896	+		HGI48_RS21545	0.74	-1.1
4,808,896	+		HGI48_RS21545	0.74	-1.9
4,808,899	+		HGI48_RS21545	0.74	-0.1
4,808,899	+		HGI48_RS21545	0.74	-1.7
4,808,899	+		HGI48_RS21545	0.74	-0.6
4,808,900	-		HGI48_RS21545	0.74	+1.6
4,808,900	-		HGI48_RS21545	0.74	-3.2
4,808,900	-		HGI48_RS21545	0.74	-1.2
4,808,900	-		HGI48_RS21545	0.74	-0.8
4,808,900	-		HGI48_RS21545	0.74	-1.1
4,808,900	-		HGI48_RS21545	0.74	-1.3
4,808,907	-		HGI48_RS21545	0.75	-2.6
4,808,907	-		HGI48_RS21545	0.75	+1.1
4,808,926	+		HGI48_RS21545	0.76	+0.3
4,808,927	-		HGI48_RS21545	0.76	-0.8
4,808,927	-		HGI48_RS21545	0.76	-0.8
4,808,931	+		HGI48_RS21545	0.76	-2.3
4,808,931	+		HGI48_RS21545	0.76	+0.9
4,808,931	+		HGI48_RS21545	0.76	-2.2
4,808,931	+		HGI48_RS21545	0.76	-0.1
4,808,931	+		HGI48_RS21545	0.76	+0.7
4,808,931	+		HGI48_RS21545	0.76	+0.9
4,808,932	-		HGI48_RS21545	0.76	+2.3
4,808,932	-		HGI48_RS21545	0.76	-1.8
4,808,948	+		HGI48_RS21545	0.78	-1.9
4,809,032	+		HGI48_RS21545	0.83	-0.8
4,809,033	-		HGI48_RS21545	0.83	-1.1
4,809,053	+		HGI48_RS21545	0.85	+1.7
4,809,053	+		HGI48_RS21545	0.85	-0.8
4,809,053	+		HGI48_RS21545	0.85	+1.2
4,809,053	+				+4.8
4,809,054	-				-0.3
4,809,054	-		HGI48_RS21545	0.85	-0.8
4,809,054	-		HGI48_RS21545	0.85	-0.8
4,809,126	-		HGI48_RS21545	0.90	+0.3
4,809,131	+				-2.6
4,809,131	+				+1.4
4,809,132	-				-0.3
4,809,156	-				+2.4
4,809,172	+				+3.0
4,809,172	+				-0.8
4,809,172	+				-0.8
4,809,173	-				+0.3
4,809,173	-				+1.9
4,809,173	-				+0.3
4,809,174	+				-3.1
4,809,174	+				-2.9
4,809,174	+				+0.9
4,809,174	+				+1.8
4,809,174	+				-1.6
4,809,175	-				+1.5
4,809,175	-				-1.1
4,809,175	-				-1.1
4,809,175	-				-1.1
4,809,185	+				+1.9
4,809,186	-				-1.1
4,809,186	-				-0.8
4,809,207	+				-1.8
4,809,207	+				+0.2
4,809,207	+				-1.3
4,809,207	+				-0.2
4,809,207	+				+0.4
4,809,207	+				-1.9
4,809,208	-				+0.7
4,809,208	-				-2.7
4,809,208	-				+1.8
4,809,214	+				-0.6
4,809,215	-				-1.1
4,809,215	-				-1.6
4,809,234	+				-0.8
4,809,234	+				-2.1
4,809,234	+				+0.8
4,809,234	+				-3.1
4,809,235	-				+1.4
4,809,235	-				-1.3
4,809,235	-				+0.6
4,809,235	-				-3.1
4,809,235	-				+1.2
4,809,284	-				+3.4
4,809,284	-				-1.8
4,809,300	+				-1.9
4,809,301	-				-1.6
4,809,301	-				-1.6
4,809,301	-				-2.2
4,809,301	-				-0.3
4,809,301	-				-2.5
4,809,301	-				-2.1
4,809,301	-				-0.8
4,809,301	-				-0.8
4,809,301	-				+2.8
4,809,302	+				-0.8
4,809,302	+				-2.2
4,809,302	+				+2.1
4,809,303	-				-0.3
4,809,303	-				+1.1
4,809,303	-				-0.8
4,809,303	-				+1.5
4,809,312	+				-3.5
4,809,313	-				+0.2
4,809,313	-				-2.1
4,809,313	-				+2.0
4,809,334	-				+0.2
4,809,334	-				-1.1
4,809,334	-				-1.6
4,809,375	+				+1.2
4,809,375	+				-1.3
4,809,376	-				-0.8
4,809,424	+		HGI48_RS21550	0.12	-0.3
4,809,424	+		HGI48_RS21550	0.12	-1.6
4,809,490	-		HGI48_RS21550	0.17	+0.7
4,809,490	-		HGI48_RS21550	0.17	+0.5
4,809,490	-		HGI48_RS21550	0.17	-1.1
4,809,490	-		HGI48_RS21550	0.17	-1.3
4,809,490	-		HGI48_RS21550	0.17	+1.4
4,809,500	-		HGI48_RS21550	0.18	-1.6
4,809,500	-		HGI48_RS21550	0.18	-0.5
4,809,524	-		HGI48_RS21550	0.20	+0.1
4,809,551	-		HGI48_RS21550	0.22	+1.0
4,809,648	+		HGI48_RS21550	0.29	-0.8
4,809,648	+		HGI48_RS21550	0.29	+2.2
4,809,649	-		HGI48_RS21550	0.30	-2.5
4,809,649	-		HGI48_RS21550	0.30	-1.3
4,809,689	+		HGI48_RS21550	0.33	+0.5
4,809,690	-				-0.3
4,809,723	-		HGI48_RS21550	0.35	-1.1
4,809,747	+		HGI48_RS21550	0.37	-1.3
4,809,748	-		HGI48_RS21550	0.37	-1.1
4,809,748	-		HGI48_RS21550	0.37	-0.0
4,809,748	-		HGI48_RS21550	0.37	-0.8
4,809,748	-		HGI48_RS21550	0.37	-2.6
4,809,768	+		HGI48_RS21550	0.39	-1.6
4,809,768	+		HGI48_RS21550	0.39	+0.4
4,809,768	+		HGI48_RS21550	0.39	-0.8
4,809,768	+		HGI48_RS21550	0.39	-0.8
4,809,769	-		HGI48_RS21550	0.39	-1.9
4,809,785	+		HGI48_RS21550	0.40	-1.6
4,809,825	-		HGI48_RS21550	0.43	+2.2
4,809,825	-		HGI48_RS21550	0.43	-1.6
4,809,852	-				+2.0
4,809,859	-		HGI48_RS21550	0.46	+1.1
4,809,893	+		HGI48_RS21550	0.48	+1.3
4,809,893	+				-0.3
4,809,893	+		HGI48_RS21550	0.48	-2.6
4,809,894	-		HGI48_RS21550	0.48	-2.9
4,809,895	+		HGI48_RS21550	0.48	+2.9
4,809,895	+		HGI48_RS21550	0.48	-2.2
4,809,895	+		HGI48_RS21550	0.48	+1.4
4,809,895	+		HGI48_RS21550	0.48	-1.1
4,809,895	+		HGI48_RS21550	0.48	-0.0
4,809,896	-		HGI48_RS21550	0.48	-1.9
4,809,896	-		HGI48_RS21550	0.48	+0.6
4,809,896	-		HGI48_RS21550	0.48	-2.3
4,809,896	-		HGI48_RS21550	0.48	+0.3
4,809,896	-		HGI48_RS21550	0.48	-2.2
4,809,896	-		HGI48_RS21550	0.48	-2.2
4,809,896	-		HGI48_RS21550	0.48	+1.4
4,809,931	+		HGI48_RS21550	0.51	-1.8
4,809,931	+		HGI48_RS21550	0.51	+0.7
4,809,931	+		HGI48_RS21550	0.51	+1.9
4,809,931	+		HGI48_RS21550	0.51	-0.3
4,809,932	-		HGI48_RS21550	0.51	-1.6
4,809,932	-				-0.3
4,809,932	-		HGI48_RS21550	0.51	-1.9
4,809,932	-		HGI48_RS21550	0.51	+1.4
4,809,932	-		HGI48_RS21550	0.51	+0.7
4,809,952	-		HGI48_RS21550	0.53	+2.1
4,809,956	+		HGI48_RS21550	0.53	-2.2
4,810,033	+		HGI48_RS21550	0.59	+0.6
4,810,033	+		HGI48_RS21550	0.59	-1.3
4,810,034	-		HGI48_RS21550	0.59	-2.3
4,810,067	+		HGI48_RS21550	0.61	+0.3
4,810,071	+		HGI48_RS21550	0.62	+1.0
4,810,071	+		HGI48_RS21550	0.62	-1.3
4,810,072	-		HGI48_RS21550	0.62	-3.6
4,810,182	-		HGI48_RS21550	0.70	-1.8
4,810,211	+		HGI48_RS21550	0.72	-1.1
4,810,211	+		HGI48_RS21550	0.72	-1.3
4,810,211	+		HGI48_RS21550	0.72	-1.9
4,810,230	-		HGI48_RS21550	0.74	+0.8
4,810,267	+		HGI48_RS21550	0.77	+1.1
4,810,267	+				-0.3
4,810,267	+		HGI48_RS21550	0.77	+0.9
4,810,267	+		HGI48_RS21550	0.77	+2.4
4,810,268	-		HGI48_RS21550	0.77	-1.6
4,810,268	-		HGI48_RS21550	0.77	-2.3
4,810,268	-		HGI48_RS21550	0.77	-1.1
4,810,268	-		HGI48_RS21550	0.77	-1.6