Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20230

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,517,000	+		HGI48_RS20225	0.36	-2.4
4,517,046	+				-0.3
4,517,046	+		HGI48_RS20225	0.40	-2.2
4,517,046	+		HGI48_RS20225	0.40	+0.3
4,517,046	+		HGI48_RS20225	0.40	+2.7
4,517,046	+		HGI48_RS20225	0.40	+1.7
4,517,047	-		HGI48_RS20225	0.40	-2.4
4,517,061	-		HGI48_RS20225	0.41	+1.2
4,517,137	+				+0.3
4,517,138	-				-0.3
4,517,143	-		HGI48_RS20225	0.47	-1.0
4,517,187	+		HGI48_RS20225	0.51	-1.3
4,517,244	+		HGI48_RS20225	0.55	-0.5
4,517,245	-		HGI48_RS20225	0.55	-0.1
4,517,348	+		HGI48_RS20225	0.63	-1.1
4,517,348	+				-0.3
4,517,348	+		HGI48_RS20225	0.63	-1.1
4,517,349	-		HGI48_RS20225	0.63	-1.1
4,517,349	-		HGI48_RS20225	0.63	-0.7
4,517,349	-		HGI48_RS20225	0.63	+1.3
4,517,498	+		HGI48_RS20225	0.75	-2.9
4,517,499	-		HGI48_RS20225	0.75	-1.5
4,517,518	+		HGI48_RS20225	0.76	+1.5
4,517,518	+		HGI48_RS20225	0.76	+0.9
4,517,518	+		HGI48_RS20225	0.76	-0.7
4,517,518	+		HGI48_RS20225	0.76	-1.1
4,517,518	+		HGI48_RS20225	0.76	-0.4
4,517,519	-		HGI48_RS20225	0.76	-1.1
4,517,519	-		HGI48_RS20225	0.76	-2.9
4,517,519	-		HGI48_RS20225	0.76	+6.2
4,517,527	-		HGI48_RS20225	0.77	-1.7
4,517,527	-		HGI48_RS20225	0.77	+0.8
4,517,553	+		HGI48_RS20225	0.79	-2.4
4,517,554	-				+0.3
4,517,554	-		HGI48_RS20225	0.79	-1.5
4,517,625	+		HGI48_RS20225	0.85	-1.7
4,517,625	+		HGI48_RS20225	0.85	-0.7
4,517,626	-		HGI48_RS20225	0.85	-2.4
4,517,626	-		HGI48_RS20225	0.85	-2.1
4,517,626	-		HGI48_RS20225	0.85	-2.1
4,517,626	-		HGI48_RS20225	0.85	+0.9
4,517,655	+		HGI48_RS20225	0.87	-1.5
4,517,655	+		HGI48_RS20225	0.87	+2.4
4,517,655	+		HGI48_RS20225	0.87	+0.2
4,517,656	-		HGI48_RS20225	0.87	+0.1
4,517,656	-		HGI48_RS20225	0.87	+1.4
4,517,656	-		HGI48_RS20225	0.87	+1.3
4,517,656	-		HGI48_RS20225	0.87	-1.1
4,517,657	+		HGI48_RS20225	0.87	-0.7
4,517,657	+		HGI48_RS20225	0.87	-1.3
4,517,658	-		HGI48_RS20225	0.87	-1.1
4,517,669	+		HGI48_RS20225	0.88	+0.1
4,517,669	+		HGI48_RS20225	0.88	-0.7
4,517,685	+		HGI48_RS20225	0.89	-1.1
4,517,685	+		HGI48_RS20225	0.89	+0.8
4,517,685	+		HGI48_RS20225	0.89	-1.3
4,517,685	+				+2.5
4,517,685	+		HGI48_RS20225	0.89	+1.0
4,517,686	-		HGI48_RS20225	0.89	-1.1
4,517,686	-		HGI48_RS20225	0.89	+0.6
4,517,686	-		HGI48_RS20225	0.89	+0.5
4,517,808	-				-2.6
4,517,851	+				-3.2
4,517,852	-				-0.2
4,517,867	+				-1.1
4,517,919	-				-0.1
4,517,943	+				+3.6
4,517,943	+				+1.0
4,517,944	-				-1.3
4,517,944	-				-1.1
4,518,066	-		HGI48_RS20230	0.16	-0.7
4,518,186	+		HGI48_RS20230	0.24	-2.7
4,518,186	+		HGI48_RS20230	0.24	-0.7
4,518,187	-		HGI48_RS20230	0.24	-1.3
4,518,187	-				+0.3
4,518,187	-		HGI48_RS20230	0.24	+0.6
4,518,187	-		HGI48_RS20230	0.24	-1.3
4,518,190	+		HGI48_RS20230	0.24	-1.6
4,518,191	-		HGI48_RS20230	0.24	-0.9
4,518,191	-		HGI48_RS20230	0.24	+0.9
4,518,517	+		HGI48_RS20230	0.46	-2.3
4,518,517	+		HGI48_RS20230	0.46	-0.2
4,518,517	+		HGI48_RS20230	0.46	-1.3
4,518,517	+		HGI48_RS20230	0.46	-0.7
4,518,517	+		HGI48_RS20230	0.46	-1.7
4,518,517	+		HGI48_RS20230	0.46	-1.2
4,518,517	+		HGI48_RS20230	0.46	+1.0
4,518,517	+		HGI48_RS20230	0.46	-1.9
4,518,518	-		HGI48_RS20230	0.46	+0.4
4,518,518	-		HGI48_RS20230	0.46	-1.3
4,518,518	-		HGI48_RS20230	0.46	-1.6
4,518,518	-		HGI48_RS20230	0.46	-1.1
4,518,518	-		HGI48_RS20230	0.46	-1.6
4,518,851	+		HGI48_RS20230	0.68	-0.4
4,518,965	-		HGI48_RS20230	0.76	-1.1
4,519,285	+				-1.3
4,519,285	+				-0.7
4,519,285	+				-1.7
4,519,285	+				-1.1
4,519,285	+				+0.3
4,519,285	+				+0.6
4,519,286	-				-1.7
4,519,286	-				-0.7
4,519,286	-				-1.7
4,519,286	-				-1.7
4,519,286	-				-1.7
4,519,286	-				-1.3
4,519,317	+				+1.8
4,519,317	+				-1.3
4,519,317	+				-0.4
4,519,317	+				+0.3
4,519,317	+				+1.1
4,519,317	+				-0.7
4,519,335	+				-1.3
4,519,336	-				-1.7
4,519,336	-				+1.3
4,519,336	-				-1.6
4,519,342	+				+0.0
4,519,343	-				+3.8
4,519,343	-				+1.3
4,519,353	+				+3.0
4,519,353	+				+0.8
4,519,353	+				-2.1
4,519,354	-				-1.1
4,519,354	-				-1.6
4,519,354	-				+0.9
4,519,443	-				+2.8
4,519,553	+				+1.6
4,519,554	-				+2.6
4,519,554	-				-2.1
4,519,562	+				-2.5
4,519,562	+				-1.1
4,519,563	-				+1.3
4,519,563	-				-2.2
4,519,723	+				-1.5
4,519,723	+				+2.1
4,519,723	+				+0.8
4,519,723	+				-0.7
4,519,723	+				+1.3
4,519,724	-				-1.5
4,519,724	-				-1.7
4,519,724	-				-1.3
4,519,748	+				-1.5
4,519,749	-				+3.0
4,519,749	-				-1.1
4,519,787	+				-2.3
4,519,787	+				-1.3
4,519,787	+				+0.6
4,519,788	-				-1.7
4,519,788	-				+1.0
4,519,788	-				+1.3
4,519,788	-				-2.5
4,519,861	+				-0.3
4,519,861	+				-0.7
4,519,861	+				+0.3
4,519,861	+				+2.0
4,519,862	-				+0.5
4,519,862	-				-0.7
4,519,925	-		HGI48_RS20235	0.10	+1.4
4,519,934	-		HGI48_RS20235	0.11	+1.3
4,519,934	-		HGI48_RS20235	0.11	-3.4
4,519,934	-		HGI48_RS20235	0.11	-2.5
4,519,979	+		HGI48_RS20235	0.13	+1.4
4,519,979	+		HGI48_RS20235	0.13	-1.9
4,519,980	-		HGI48_RS20235	0.13	+2.3
4,519,980	-		HGI48_RS20235	0.13	+0.7
4,519,980	-		HGI48_RS20235	0.13	+1.9
4,519,980	-		HGI48_RS20235	0.13	+1.4
4,519,980	-		HGI48_RS20235	0.13	-2.4
4,519,999	+		HGI48_RS20235	0.15	+1.5
4,519,999	+		HGI48_RS20235	0.15	+2.1
4,519,999	+				-0.3
4,519,999	+		HGI48_RS20235	0.15	+0.8
4,520,000	-		HGI48_RS20235	0.15	-4.4
4,520,000	-		HGI48_RS20235	0.15	-0.7
4,520,001	+		HGI48_RS20235	0.15	+2.3
4,520,001	+		HGI48_RS20235	0.15	-3.5
4,520,001	+		HGI48_RS20235	0.15	-0.3
4,520,001	+		HGI48_RS20235	0.15	-1.5
4,520,002	-		HGI48_RS20235	0.15	+1.7
4,520,002	-		HGI48_RS20235	0.15	-2.2
4,520,014	+		HGI48_RS20235	0.15	+0.5
4,520,014	+		HGI48_RS20235	0.15	+1.5
4,520,014	+		HGI48_RS20235	0.15	+0.8
4,520,119	+		HGI48_RS20235	0.21	+1.5
4,520,188	-		HGI48_RS20235	0.25	-0.1