Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS20005

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,470,630	+				+1.7
4,470,630	+				-2.1
4,470,631	-				-1.6
4,470,673	+				-1.9
4,470,676	+				-1.3
4,470,676	+				-0.1
4,470,676	+				-1.5
4,470,677	-				+1.2
4,470,682	+				-0.3
4,470,682	+				-0.3
4,470,683	-				-1.3
4,470,683	-				+1.2
4,470,715	+				-2.2
4,470,715	+				+0.6
4,470,716	-				-1.9
4,470,716	-				-0.2
4,470,933	+		HGI48_RS20000	0.37	-3.0
4,470,933	+		HGI48_RS20000	0.37	-2.6
4,471,086	+		HGI48_RS20000	0.61	-3.1
4,471,087	-		HGI48_RS20000	0.61	-1.6
4,471,087	-		HGI48_RS20000	0.61	-0.8
4,471,105	+				+1.2
4,471,106	-		HGI48_RS20000	0.64	-1.3
4,471,331	+				-0.3
4,471,331	+				-1.1
4,471,332	-				-0.2
4,471,332	-				-1.3
4,471,380	-				+1.5
4,471,380	-				+0.1
4,471,380	-				-3.0
4,471,380	-				-1.3
4,471,395	+				-1.9
4,471,396	-				-1.8
4,471,518	-				-0.3
4,471,524	-				+0.7
4,471,524	-				-2.6
4,471,524	-				+0.8
4,471,524	-				+1.8
4,471,524	-				-2.1
4,471,524	-				+1.5
4,471,527	-				+0.8
4,471,527	-				-1.3
4,471,527	-				+3.5
4,471,527	-				+2.2
4,471,645	+				-0.8
4,471,645	+				-1.1
4,471,646	-				+1.2
4,471,646	-				-2.1
4,471,724	+				+2.1
4,471,724	+				-0.1
4,471,725	-				+2.2
4,471,725	-				+0.5
4,471,768	-				-1.1
4,471,768	-				+0.2
4,471,802	-		HGI48_RS20005	0.11	+1.2
4,471,831	+		HGI48_RS20005	0.12	-1.1
4,471,839	+		HGI48_RS20005	0.13	-1.8
4,472,044	+		HGI48_RS20005	0.24	-1.3
4,472,045	-		HGI48_RS20005	0.24	-1.8
4,472,045	-		HGI48_RS20005	0.24	+1.1
4,472,045	-		HGI48_RS20005	0.24	-1.1
4,472,062	-				-0.3
4,472,133	+		HGI48_RS20005	0.29	+1.7
4,472,133	+				-0.3
4,472,134	-				-0.3
4,472,271	+		HGI48_RS20005	0.36	+3.2
4,472,272	-		HGI48_RS20005	0.37	-0.8
4,472,272	-		HGI48_RS20005	0.37	+1.5
4,472,416	-		HGI48_RS20005	0.44	-1.1
4,472,472	+		HGI48_RS20005	0.47	-1.1
4,472,473	-		HGI48_RS20005	0.47	+1.9
4,472,473	-		HGI48_RS20005	0.47	+1.4
4,472,475	+				-0.3
4,472,475	+		HGI48_RS20005	0.48	-1.9
4,472,475	+		HGI48_RS20005	0.48	+2.2
4,472,476	-		HGI48_RS20005	0.48	-2.1
4,472,476	-		HGI48_RS20005	0.48	-0.6
4,472,476	-		HGI48_RS20005	0.48	-0.8
4,472,524	+		HGI48_RS20005	0.50	-1.1
4,472,524	+		HGI48_RS20005	0.50	+0.7
4,472,525	-				-0.3
4,472,637	+		HGI48_RS20005	0.56	+2.1
4,472,709	+		HGI48_RS20005	0.60	-2.2
4,472,709	+		HGI48_RS20005	0.60	+0.2
4,472,710	-		HGI48_RS20005	0.60	-1.1
4,472,710	-		HGI48_RS20005	0.60	-0.8
4,472,710	-				+1.7
4,472,950	-		HGI48_RS20005	0.74	-1.1
4,473,075	+		HGI48_RS20005	0.80	+1.0
4,473,075	+		HGI48_RS20005	0.80	-1.3
4,473,075	+		HGI48_RS20005	0.80	-0.8
4,473,076	-		HGI48_RS20005	0.80	-0.8
4,473,076	-				+0.2
4,473,172	-		HGI48_RS20005	0.86	+3.1
4,473,172	-		HGI48_RS20005	0.86	-1.1
4,473,172	-		HGI48_RS20005	0.86	-2.5
4,473,211	+		HGI48_RS20005	0.88	-0.3
4,473,212	-		HGI48_RS20005	0.88	-1.8
4,473,366	+				-3.3
4,473,410	-				-1.6
4,473,416	+				-1.1
4,473,416	+				+0.6
4,473,417	-				+1.8
4,473,417	-				-2.5
4,473,417	-				-1.3
4,473,428	-				-0.3
4,473,454	-				-2.1
4,473,474	+				-2.1
4,473,475	-				-0.2
4,473,506	+				+0.5
4,473,586	+				-1.1
4,473,586	+				-1.1
4,473,586	+				+0.7
4,473,587	-				+1.2
4,473,587	-				-1.6
4,473,587	-				-1.3
4,473,587	-				-1.3
4,473,587	-				-0.6
4,473,587	-				-1.3
4,473,593	+				-2.2
4,473,593	+				-1.8
4,473,594	-				+1.8
4,473,594	-				-1.1
4,473,594	-				+1.2
4,473,594	-				+1.1
4,473,640	+				-0.8
4,473,640	+				-2.6
4,473,641	-				+0.5
4,473,641	-				-0.8
4,473,641	-				+0.3
4,473,641	-				-1.6
4,473,661	+				-2.5
4,473,672	+		HGI48_RS20010	0.10	+1.8
4,473,672	+		HGI48_RS20010	0.10	-2.1
4,473,673	-				+0.2
4,473,673	-		HGI48_RS20010	0.10	+1.6
4,473,673	-		HGI48_RS20010	0.10	+2.3
4,473,673	-		HGI48_RS20010	0.10	+1.5
4,473,752	+		HGI48_RS20010	0.19	+0.9
4,473,752	+		HGI48_RS20010	0.19	+0.5
4,473,752	+		HGI48_RS20010	0.19	-1.9
4,473,752	+		HGI48_RS20010	0.19	-1.3
4,473,752	+		HGI48_RS20010	0.19	+1.6
4,473,752	+		HGI48_RS20010	0.19	+2.1
4,473,752	+				+0.2
4,473,753	-		HGI48_RS20010	0.19	-1.1
4,473,753	-		HGI48_RS20010	0.19	-2.1
4,473,753	-		HGI48_RS20010	0.19	+1.1
4,473,753	-		HGI48_RS20010	0.19	+1.0
4,473,753	-		HGI48_RS20010	0.19	+3.5
4,473,754	+		HGI48_RS20010	0.19	-1.1
4,473,754	+		HGI48_RS20010	0.19	+2.1
4,473,754	+		HGI48_RS20010	0.19	-3.6
4,473,754	+		HGI48_RS20010	0.19	+1.8
4,473,755	-		HGI48_RS20010	0.20	-0.8
4,473,755	-		HGI48_RS20010	0.20	-1.8
4,473,779	+		HGI48_RS20010	0.22	+1.0
4,473,780	-		HGI48_RS20010	0.22	-0.8
4,473,793	+		HGI48_RS20010	0.24	+1.9
4,473,823	+		HGI48_RS20010	0.27	-0.8
4,473,824	-		HGI48_RS20010	0.27	-4.1
4,473,922	+		HGI48_RS20010	0.39	+3.5
4,473,922	+		HGI48_RS20010	0.39	-2.7
4,473,922	+		HGI48_RS20010	0.39	+1.9
4,473,923	-		HGI48_RS20010	0.39	-0.8
4,473,923	-		HGI48_RS20010	0.39	+0.1
4,473,999	+		HGI48_RS20010	0.48	-1.3
4,474,057	+		HGI48_RS20010	0.54	+2.2
4,474,057	+		HGI48_RS20010	0.54	-1.9
4,474,058	-		HGI48_RS20010	0.54	-1.6
4,474,123	+		HGI48_RS20010	0.62	-1.3
4,474,123	+		HGI48_RS20010	0.62	-0.8
4,474,123	+				+0.2
4,474,124	-		HGI48_RS20010	0.62	-2.3
4,474,124	-		HGI48_RS20010	0.62	-2.3
4,474,124	-		HGI48_RS20010	0.62	-1.3
4,474,124	-		HGI48_RS20010	0.62	+1.0
4,474,232	-		HGI48_RS20010	0.74	-3.1
4,474,251	-		HGI48_RS20010	0.77	-2.6
4,474,267	+				+0.7
4,474,267	+		HGI48_RS20010	0.78	-1.9
4,474,268	-		HGI48_RS20010	0.79	+1.4
4,474,268	-		HGI48_RS20010	0.79	-1.1
4,474,268	-		HGI48_RS20010	0.79	-0.4
4,474,268	-		HGI48_RS20010	0.79	+1.7
4,474,268	-		HGI48_RS20010	0.79	+0.9
4,474,268	-		HGI48_RS20010	0.79	-1.3
4,474,273	+		HGI48_RS20010	0.79	+1.4
4,474,273	+		HGI48_RS20010	0.79	-1.6
4,474,273	+		HGI48_RS20010	0.79	+1.0
4,474,273	+		HGI48_RS20010	0.79	-2.6
4,474,273	+		HGI48_RS20010	0.79	+0.0
4,474,282	+				-0.3
4,474,283	-		HGI48_RS20010	0.80	+0.6
4,474,283	-		HGI48_RS20010	0.80	-0.8
4,474,283	-		HGI48_RS20010	0.80	-0.2
4,474,283	-		HGI48_RS20010	0.80	-0.8
4,474,294	+		HGI48_RS20010	0.81	-0.5
4,474,294	+		HGI48_RS20010	0.81	-1.6
4,474,301	-		HGI48_RS20010	0.82	+1.4
4,474,346	+		HGI48_RS20010	0.87	-1.1
4,474,346	+		HGI48_RS20010	0.87	-1.1
4,474,346	+		HGI48_RS20010	0.87	+0.9
4,474,347	-		HGI48_RS20010	0.88	-1.1
4,474,347	-		HGI48_RS20010	0.88	+0.5