Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS17315

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,875,559	+				-0.2
3,875,559	+				-0.5
3,875,560	-				-1.7
3,875,586	+				+1.4
3,875,586	+				+0.6
3,875,586	+				+1.4
3,875,587	-				-0.9
3,875,601	+				+0.2
3,875,601	+				-1.5
3,875,601	+				-0.6
3,875,602	-				-1.2
3,875,602	-				+1.6
3,875,602	-				+2.5
3,875,602	-				+1.5
3,875,602	-				+1.5
3,875,602	-				-3.3
3,875,602	-				-3.8
3,875,602	-				+5.5
3,875,616	+				-0.5
3,875,616	+				-1.2
3,875,616	+				+0.1
3,875,616	+				-1.2
3,875,616	+				+5.0
3,875,617	-				+0.3
3,875,617	-				-0.3
3,875,617	-				-0.9
3,875,631	+				-1.2
3,875,631	+				+1.1
3,875,632	-				+0.1
3,875,632	-				-1.2
3,875,666	+				-1.2
3,875,667	-				-2.4
3,876,190	+				-0.5
3,876,428	+				-0.1
3,876,432	+				+0.0
3,876,446	-				-0.9
3,876,446	-				-1.2
3,876,449	-				-1.7
3,876,455	+				+0.2
3,876,455	+				-3.1
3,876,456	-				+2.4
3,876,461	+				+1.1
3,876,461	+				-0.1
3,876,461	+				-2.1
3,876,461	+				-2.5
3,876,461	+				-1.5
3,876,461	+				-1.5
3,876,461	+				-0.9
3,876,462	-				-1.2
3,876,462	-				+0.1
3,876,462	-				+0.6
3,876,462	-				-1.2
3,876,474	+				-0.5
3,876,474	+				-0.9
3,876,475	-				-0.9
3,876,475	-				+0.0
3,876,824	+		HGI48_RS17315	0.11	-2.5
3,876,875	+		HGI48_RS17315	0.13	-1.7
3,876,875	+		HGI48_RS17315	0.13	+1.3
3,876,875	+		HGI48_RS17315	0.13	+0.3
3,876,979	+		HGI48_RS17315	0.18	+1.8
3,876,985	+		HGI48_RS17315	0.18	+0.1
3,876,985	+		HGI48_RS17315	0.18	-1.5
3,876,985	+		HGI48_RS17315	0.18	+1.1
3,876,986	-		HGI48_RS17315	0.18	+2.3
3,876,986	-		HGI48_RS17315	0.18	-2.4
3,876,988	+		HGI48_RS17315	0.18	-0.9
3,876,988	+		HGI48_RS17315	0.18	+1.1
3,876,988	+				-0.5
3,877,079	+		HGI48_RS17315	0.22	-0.3
3,877,079	+		HGI48_RS17315	0.22	-1.2
3,877,079	+		HGI48_RS17315	0.22	-3.3
3,877,079	+		HGI48_RS17315	0.22	-1.5
3,877,079	+		HGI48_RS17315	0.22	-2.7
3,877,116	-		HGI48_RS17315	0.23	-2.1
3,877,116	-		HGI48_RS17315	0.23	+1.9
3,877,140	+		HGI48_RS17315	0.24	-0.9
3,877,270	+		HGI48_RS17315	0.29	-1.9
3,877,271	-		HGI48_RS17315	0.29	-2.1
3,877,271	-				-0.5
3,877,271	-		HGI48_RS17315	0.29	-2.2
3,877,378	+				-0.5
3,877,378	+		HGI48_RS17315	0.34	+2.1
3,877,379	-				-0.5
3,877,465	+		HGI48_RS17315	0.37	-2.1
3,877,652	+		HGI48_RS17315	0.45	-1.5
3,877,652	+		HGI48_RS17315	0.45	-1.7
3,877,780	+		HGI48_RS17315	0.50	-1.5
3,877,780	+		HGI48_RS17315	0.50	-1.2
3,877,780	+				-0.5
3,877,780	+		HGI48_RS17315	0.50	+0.4
3,877,780	+		HGI48_RS17315	0.50	-1.5
3,877,780	+		HGI48_RS17315	0.50	+1.4
3,877,781	-		HGI48_RS17315	0.50	+0.4
3,877,781	-		HGI48_RS17315	0.50	+2.6
3,877,781	-		HGI48_RS17315	0.50	+1.5
3,877,781	-		HGI48_RS17315	0.50	-1.7
3,877,781	-		HGI48_RS17315	0.50	-1.7
3,877,781	-		HGI48_RS17315	0.50	-2.1
3,877,873	+		HGI48_RS17315	0.54	+2.0
3,877,873	+		HGI48_RS17315	0.54	+0.0
3,877,873	+		HGI48_RS17315	0.54	-1.2
3,877,873	+		HGI48_RS17315	0.54	-1.7
3,877,874	-		HGI48_RS17315	0.54	-1.5
3,877,874	-		HGI48_RS17315	0.54	-1.2
3,877,874	-		HGI48_RS17315	0.54	+1.4
3,877,909	+		HGI48_RS17315	0.55	-1.2
3,877,909	+		HGI48_RS17315	0.55	+1.2
3,877,909	+		HGI48_RS17315	0.55	-1.5
3,877,910	-		HGI48_RS17315	0.55	+0.6
3,877,910	-				+2.7
3,877,916	+		HGI48_RS17315	0.55	-3.1
3,877,916	+		HGI48_RS17315	0.55	+0.0
3,877,917	-		HGI48_RS17315	0.55	-1.7
3,877,965	-		HGI48_RS17315	0.57	+1.1
3,877,965	-		HGI48_RS17315	0.57	+4.2
3,877,965	-				+1.7
3,877,965	-		HGI48_RS17315	0.57	-1.9
3,878,050	+		HGI48_RS17315	0.61	-1.2
3,878,050	+				-0.5
3,878,050	+		HGI48_RS17315	0.61	-1.7
3,878,050	+		HGI48_RS17315	0.61	-0.9
3,878,050	+		HGI48_RS17315	0.61	-2.4
3,878,107	+		HGI48_RS17315	0.63	-0.9
3,878,107	+		HGI48_RS17315	0.63	-2.4
3,878,107	+		HGI48_RS17315	0.63	-1.2
3,878,108	-		HGI48_RS17315	0.63	-2.5
3,878,108	-		HGI48_RS17315	0.63	+1.6
3,878,110	+		HGI48_RS17315	0.63	+0.5
3,878,110	+		HGI48_RS17315	0.63	-1.2
3,878,110	+		HGI48_RS17315	0.63	+1.2
3,878,110	+				+1.5
3,878,110	+		HGI48_RS17315	0.63	-0.9
3,878,110	+		HGI48_RS17315	0.63	-0.9
3,878,110	+		HGI48_RS17315	0.63	-1.2
3,878,111	-		HGI48_RS17315	0.63	+1.6
3,878,170	+				-0.5
3,878,170	+				+3.1
3,878,333	+		HGI48_RS17315	0.72	-1.2
3,878,391	+		HGI48_RS17315	0.75	+2.0
3,878,391	+		HGI48_RS17315	0.75	-0.9
3,878,565	+		HGI48_RS17315	0.82	-0.9
3,878,695	+		HGI48_RS17315	0.87	+0.3
3,878,696	-		HGI48_RS17315	0.87	+1.6
3,878,795	-				-1.5
3,878,953	+				-0.1
3,878,980	+				-0.1
3,879,062	+				+0.8
3,879,062	+				-1.2
3,879,062	+				-0.9
3,879,076	+				+0.7
3,879,077	-				-2.2
3,879,077	-				+0.1
3,879,077	-				+0.9
3,879,077	-				-1.5
3,879,081	+				+1.2
3,879,082	-				-0.3
3,879,082	-				+0.1
3,879,123	-		HGI48_RS17320	0.15	+2.7
3,879,166	+		HGI48_RS17320	0.25	-1.9
3,879,193	-		HGI48_RS17320	0.31	-1.7
3,879,195	+		HGI48_RS17320	0.31	+0.7
3,879,195	+		HGI48_RS17320	0.31	+0.6
3,879,196	-		HGI48_RS17320	0.32	+1.9
3,879,196	-				+1.1
3,879,364	-		HGI48_RS17320	0.71	+1.4
3,879,438	+		HGI48_RS17320	0.88	+1.8
3,879,438	+		HGI48_RS17320	0.88	-1.9
3,879,440	+		HGI48_RS17320	0.89	-3.6
3,879,440	+				+0.1
3,879,440	+		HGI48_RS17320	0.89	-0.5
3,879,441	-		HGI48_RS17320	0.89	-1.1
3,879,461	+				+1.6
3,879,462	-				-1.9
3,879,479	-				-0.5
3,879,501	-				-0.5
3,879,612	-				-2.4
3,879,640	-				-0.5
3,879,643	+				+0.1
3,879,707	+				-1.5
3,879,708	-				+0.0
3,879,708	-				+0.1
3,879,712	+				+2.3
3,879,713	-				-2.7
3,879,713	-				-1.9
3,879,725	+				+0.8
3,879,725	+				-1.2
3,879,725	+				-0.9
3,879,726	-				-0.5
3,879,745	+				+1.5
3,879,746	-				+1.3
3,879,746	-				+5.1
3,879,746	-				-0.5
3,879,746	-				+2.8
3,879,762	+				-1.2
3,879,763	-				-1.2
3,879,768	+				+2.1
3,879,768	+				-1.2
3,879,769	-				-1.5
3,879,778	+				+0.5
3,879,783	+				+0.7
3,879,794	+				+0.6
3,879,921	-				-1.2
3,879,927	-				+1.3
3,879,927	-				-1.2