Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS16695

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,739,251	-				-0.6
3,739,292	-				-2.6
3,739,384	+				+1.8
3,739,384	+		HGI48_RS16690	0.13	+1.5
3,739,384	+		HGI48_RS16690	0.13	-1.9
3,739,385	-		HGI48_RS16690	0.13	-2.8
3,739,385	-				-0.5
3,739,404	-		HGI48_RS16690	0.16	-0.3
3,739,404	-		HGI48_RS16690	0.16	-1.8
3,739,404	-		HGI48_RS16690	0.16	-1.5
3,739,536	+		HGI48_RS16690	0.38	-2.1
3,739,537	-				+0.1
3,739,680	+				+1.5
3,739,680	+		HGI48_RS16690	0.61	-3.0
3,739,680	+		HGI48_RS16690	0.61	-0.0
3,739,680	+				-0.5
3,739,681	-		HGI48_RS16690	0.61	+0.7
3,739,917	+				+0.4
3,739,918	-				+2.2
3,739,929	+				+1.2
3,739,930	-				-1.5
3,739,930	-				+0.7
3,739,930	-				-1.8
3,739,992	+				+0.2
3,739,992	+				+1.3
3,739,993	-				-2.1
3,739,996	-				-1.9
3,739,996	-				-1.3
3,739,996	-				+3.6
3,739,996	-				-0.5
3,739,996	-				-1.8
3,739,996	-				+2.4
3,739,996	-				-0.9
3,740,001	+				+1.1
3,740,001	+				-1.8
3,740,001	+				+0.1
3,740,005	+				-1.8
3,740,065	+				-2.6
3,740,078	+				+1.4
3,740,078	+				-0.9
3,740,078	+				+3.4
3,740,079	-				+0.1
3,740,080	+				+2.9
3,740,080	+				+1.5
3,740,080	+				+0.5
3,740,080	+				-2.1
3,740,081	-				-1.5
3,740,081	-				-2.9
3,740,081	-				-0.4
3,740,081	-				+1.8
3,740,081	-				+1.3
3,740,082	+				-2.9
3,740,082	+				+1.3
3,740,082	+				+1.2
3,740,082	+				-1.8
3,740,082	+				-1.8
3,740,082	+				-0.9
3,740,082	+				+0.1
3,740,083	-				+0.3
3,740,083	-				-1.8
3,740,083	-				+2.1
3,740,083	-				-3.0
3,740,083	-				-2.6
3,740,083	-				+0.3
3,740,083	-				-0.5
3,740,083	-				-2.5
3,740,083	-				-0.0
3,740,259	+		HGI48_RS16695	0.12	+1.3
3,740,280	+		HGI48_RS16695	0.13	-1.7
3,740,280	+		HGI48_RS16695	0.13	-1.7
3,740,308	-				-0.5
3,740,475	-		HGI48_RS16695	0.30	-3.3
3,740,475	-				+2.7
3,740,475	-				+0.1
3,740,475	-		HGI48_RS16695	0.30	+0.7
3,740,475	-		HGI48_RS16695	0.30	-0.1
3,740,493	+		HGI48_RS16695	0.32	-2.5
3,740,493	+		HGI48_RS16695	0.32	-0.1
3,740,493	+		HGI48_RS16695	0.32	+0.2
3,740,494	-		HGI48_RS16695	0.32	-1.0
3,740,533	+		HGI48_RS16695	0.35	+0.8
3,740,533	+		HGI48_RS16695	0.35	-1.5
3,740,533	+		HGI48_RS16695	0.35	+1.7
3,740,534	-				-0.5
3,740,712	+		HGI48_RS16695	0.51	+0.3
3,740,712	+				+0.1
3,740,712	+		HGI48_RS16695	0.51	-2.1
3,740,712	+		HGI48_RS16695	0.51	-0.0
3,740,712	+		HGI48_RS16695	0.51	-1.7
3,740,712	+		HGI48_RS16695	0.51	-2.3
3,740,712	+		HGI48_RS16695	0.51	+1.8
3,740,712	+		HGI48_RS16695	0.51	-1.5
3,740,712	+		HGI48_RS16695	0.51	-1.7
3,740,712	+		HGI48_RS16695	0.51	-3.1
3,740,712	+		HGI48_RS16695	0.51	+1.7
3,740,712	+		HGI48_RS16695	0.51	-1.9
3,740,712	+		HGI48_RS16695	0.51	-1.3
3,740,712	+		HGI48_RS16695	0.51	+1.0
3,740,712	+		HGI48_RS16695	0.51	-0.2
3,740,712	+		HGI48_RS16695	0.51	+1.9
3,740,713	-		HGI48_RS16695	0.51	+1.1
3,740,713	-		HGI48_RS16695	0.51	-1.7
3,740,713	-		HGI48_RS16695	0.51	+2.2
3,740,713	-		HGI48_RS16695	0.51	-1.5
3,740,713	-		HGI48_RS16695	0.51	-2.7
3,740,713	-		HGI48_RS16695	0.51	+0.3
3,740,713	-		HGI48_RS16695	0.51	-2.1
3,740,713	-		HGI48_RS16695	0.51	+0.7
3,740,713	-		HGI48_RS16695	0.51	-1.3
3,740,713	-		HGI48_RS16695	0.51	+1.3
3,740,733	+				-0.5
3,740,733	+		HGI48_RS16695	0.53	+0.8
3,740,833	-		HGI48_RS16695	0.61	-0.3
3,740,860	-		HGI48_RS16695	0.64	-2.4
3,740,897	+		HGI48_RS16695	0.67	+0.7
3,740,910	+		HGI48_RS16695	0.68	-1.7
3,740,910	+		HGI48_RS16695	0.68	+2.2
3,741,078	+		HGI48_RS16695	0.82	-1.5
3,741,078	+		HGI48_RS16695	0.82	-2.3
3,741,078	+		HGI48_RS16695	0.82	-2.3
3,741,078	+		HGI48_RS16695	0.82	-1.7
3,741,078	+		HGI48_RS16695	0.82	-0.8
3,741,078	+		HGI48_RS16695	0.82	-1.5
3,741,078	+		HGI48_RS16695	0.82	-0.9
3,741,078	+		HGI48_RS16695	0.82	+1.9
3,741,078	+		HGI48_RS16695	0.82	-2.1
3,741,079	-		HGI48_RS16695	0.82	+2.1
3,741,079	-		HGI48_RS16695	0.82	-1.3
3,741,079	-				-0.5
3,741,079	-		HGI48_RS16695	0.82	-1.5
3,741,079	-		HGI48_RS16695	0.82	-1.5
3,741,079	-		HGI48_RS16695	0.82	-1.5
3,741,079	-		HGI48_RS16695	0.82	+1.4
3,741,079	-		HGI48_RS16695	0.82	+1.4
3,741,206	+				-0.9
3,741,206	+				+1.5
3,741,206	+				-1.8
3,741,207	-				-0.9
3,741,220	+				-2.9
3,741,268	+				-0.5
3,741,268	+				+0.2
3,741,268	+				+1.1
3,741,268	+				+1.6
3,741,268	+				+1.8
3,741,268	+				+0.2
3,741,268	+				-0.9
3,741,269	-				+1.4
3,741,269	-				+0.3
3,741,269	-				+1.5
3,741,269	-				+0.1
3,741,269	-				-2.1
3,741,269	-				+0.6
3,741,269	-				+1.8
3,741,269	-				+1.2
3,741,269	-				-0.9
3,741,279	+				-2.3
3,741,279	+				-2.9
3,741,280	-				-1.5
3,741,280	-				+3.1
3,741,280	-				-1.5
3,741,294	+				+1.7
3,741,294	+				+1.4
3,741,294	+				-0.6
3,741,294	+				-0.5
3,741,294	+				-2.3
3,741,294	+				-1.3
3,741,294	+				+0.5
3,741,294	+				+1.4
3,741,294	+				+0.2
3,741,294	+				+2.9
3,741,294	+				+0.1
3,741,295	-				+2.2
3,741,295	-				+1.2
3,741,295	-				+0.8
3,741,295	-				-0.8
3,741,354	+		HGI48_RS16700	0.11	+1.9
3,741,575	+		HGI48_RS16700	0.40	+0.0
3,741,575	+		HGI48_RS16700	0.40	-0.9
3,741,575	+		HGI48_RS16700	0.40	+0.7
3,741,576	-		HGI48_RS16700	0.40	+1.5
3,741,576	-		HGI48_RS16700	0.40	-2.5
3,741,576	-		HGI48_RS16700	0.40	-1.5
3,741,581	+		HGI48_RS16700	0.41	+0.2
3,741,582	-		HGI48_RS16700	0.41	-0.5
3,741,623	+		HGI48_RS16700	0.46	-1.3
3,741,623	+		HGI48_RS16700	0.46	-2.5
3,741,623	+		HGI48_RS16700	0.46	-0.2
3,741,623	+		HGI48_RS16700	0.46	+0.4
3,741,623	+		HGI48_RS16700	0.46	+1.2
3,741,623	+		HGI48_RS16700	0.46	+1.1
3,741,623	+		HGI48_RS16700	0.46	-0.6
3,741,623	+		HGI48_RS16700	0.46	+1.0
3,741,623	+		HGI48_RS16700	0.46	-2.6
3,741,623	+		HGI48_RS16700	0.46	+1.2
3,741,623	+		HGI48_RS16700	0.46	-1.3
3,741,623	+		HGI48_RS16700	0.46	-2.9
3,741,623	+		HGI48_RS16700	0.46	-1.8
3,741,623	+		HGI48_RS16700	0.46	-1.3
3,741,624	-		HGI48_RS16700	0.46	-2.8
3,741,624	-		HGI48_RS16700	0.46	+0.2
3,741,624	-		HGI48_RS16700	0.46	+1.5
3,741,624	-		HGI48_RS16700	0.46	-2.3
3,741,624	-		HGI48_RS16700	0.46	+0.4
3,741,624	-		HGI48_RS16700	0.46	+0.1
3,741,624	-		HGI48_RS16700	0.46	-3.1
3,741,624	-		HGI48_RS16700	0.46	-2.9
3,741,624	-		HGI48_RS16700	0.46	+0.5
3,741,624	-		HGI48_RS16700	0.46	-3.1
3,741,624	-		HGI48_RS16700	0.46	+2.4
3,741,624	-		HGI48_RS16700	0.46	+0.9
3,741,626	+		HGI48_RS16700	0.46	+2.2
3,741,626	+		HGI48_RS16700	0.46	-2.9
3,741,626	+		HGI48_RS16700	0.46	+0.7
3,741,627	-		HGI48_RS16700	0.47	-1.5
3,741,627	-		HGI48_RS16700	0.47	+0.6
3,741,627	-		HGI48_RS16700	0.47	-0.1
3,741,627	-		HGI48_RS16700	0.47	-3.5
3,741,673	+		HGI48_RS16700	0.53	-1.5
3,741,673	+		HGI48_RS16700	0.53	+1.6
3,741,674	-		HGI48_RS16700	0.53	-0.3
3,741,674	-		HGI48_RS16700	0.53	+1.5
3,741,674	-		HGI48_RS16700	0.53	-1.5
3,741,692	+		HGI48_RS16700	0.55	+0.6
3,741,693	-		HGI48_RS16700	0.55	+0.2
3,741,734	+		HGI48_RS16700	0.61	-3.2
3,741,734	+		HGI48_RS16700	0.61	+0.4
3,741,734	+		HGI48_RS16700	0.61	+0.7
3,741,734	+		HGI48_RS16700	0.61	+0.8
3,741,735	-		HGI48_RS16700	0.61	+0.3
3,741,735	-		HGI48_RS16700	0.61	-0.1
3,741,735	-		HGI48_RS16700	0.61	-2.1
3,741,735	-		HGI48_RS16700	0.61	+1.4
3,741,749	+		HGI48_RS16700	0.62	+0.1
3,741,749	+		HGI48_RS16700	0.62	+0.4
3,741,749	+		HGI48_RS16700	0.62	+0.2
3,741,749	+		HGI48_RS16700	0.62	-0.2
3,741,749	+		HGI48_RS16700	0.62	+0.6
3,741,750	-		HGI48_RS16700	0.63	-0.3
3,741,750	-		HGI48_RS16700	0.63	+0.9
3,741,750	-		HGI48_RS16700	0.63	+0.8
3,741,750	-		HGI48_RS16700	0.63	-2.1
3,741,750	-		HGI48_RS16700	0.63	-3.2
3,741,750	-		HGI48_RS16700	0.63	-0.9
3,741,750	-		HGI48_RS16700	0.63	-1.3
3,741,750	-		HGI48_RS16700	0.63	+2.1
3,741,750	-		HGI48_RS16700	0.63	-1.1
3,741,750	-		HGI48_RS16700	0.63	-1.3
3,741,750	-		HGI48_RS16700	0.63	-2.8
3,741,750	-		HGI48_RS16700	0.63	+1.0
3,741,827	+		HGI48_RS16700	0.73	+0.6
3,741,827	+				+1.1
3,741,827	+		HGI48_RS16700	0.73	+0.2
3,741,827	+		HGI48_RS16700	0.73	+0.9
3,741,827	+		HGI48_RS16700	0.73	+1.0
3,741,827	+		HGI48_RS16700	0.73	-0.5
3,741,827	+		HGI48_RS16700	0.73	+0.7
3,741,827	+		HGI48_RS16700	0.73	-1.3
3,741,827	+		HGI48_RS16700	0.73	-3.1
3,741,827	+		HGI48_RS16700	0.73	+1.4
3,741,827	+		HGI48_RS16700	0.73	-1.5
3,741,827	+		HGI48_RS16700	0.73	-0.9
3,741,828	-		HGI48_RS16700	0.73	+0.2
3,741,828	-		HGI48_RS16700	0.73	-1.5
3,741,828	-		HGI48_RS16700	0.73	-1.3
3,741,828	-		HGI48_RS16700	0.73	-3.2
3,741,828	-		HGI48_RS16700	0.73	+1.2
3,741,828	-		HGI48_RS16700	0.73	-0.9
3,741,828	-		HGI48_RS16700	0.73	-0.6
3,741,828	-		HGI48_RS16700	0.73	-0.4
3,741,828	-		HGI48_RS16700	0.73	-1.4
3,741,828	-		HGI48_RS16700	0.73	+2.4
3,741,828	-		HGI48_RS16700	0.73	-4.1
3,741,828	-		HGI48_RS16700	0.73	+0.2
3,741,828	-		HGI48_RS16700	0.73	+0.2
3,741,828	-		HGI48_RS16700	0.73	-2.3
3,741,828	-		HGI48_RS16700	0.73	-0.8
3,741,828	-		HGI48_RS16700	0.73	-2.3
3,741,828	-		HGI48_RS16700	0.73	+0.1
3,741,828	-		HGI48_RS16700	0.73	+0.1
3,741,828	-		HGI48_RS16700	0.73	-1.8
3,741,828	-		HGI48_RS16700	0.73	-0.3
3,741,828	-		HGI48_RS16700	0.73	-1.1
3,741,895	+		HGI48_RS16700	0.82	-1.8
3,741,986	+				-1.8
3,741,986	+				-0.9
3,741,987	-				+0.9
3,741,987	-				-2.9
3,742,034	+				+1.2
3,742,034	+				-0.5