Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15865

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,567,023	+				-2.2
3,567,023	+				-1.6
3,567,023	+				+2.2
3,567,024	-				-1.4
3,567,027	+				-4.3
3,567,027	+				-1.0
3,567,028	-				-1.6
3,567,028	-				+1.7
3,567,032	-				-0.6
3,567,039	-				-1.6
3,567,039	-				+3.5
3,567,042	+				+1.5
3,567,043	-				+1.1
3,567,043	-				-1.4
3,567,046	+				-1.6
3,567,046	+				-1.0
3,567,046	+				-1.4
3,567,047	-				-1.8
3,567,053	+				-0.0
3,567,053	+				-1.4
3,567,054	-				+0.2
3,567,054	-				-1.0
3,567,057	+				+1.5
3,567,057	+				-1.4
3,567,057	+				+0.8
3,567,058	-				-1.8
3,567,061	+				-1.8
3,567,101	+				-2.0
3,567,289	+		HGI48_RS15860	0.32	-2.0
3,567,290	-		HGI48_RS15860	0.32	+1.5
3,567,290	-		HGI48_RS15860	0.32	+0.8
3,567,363	+		HGI48_RS15860	0.42	-1.8
3,567,364	-		HGI48_RS15860	0.42	-1.8
3,567,366	-		HGI48_RS15860	0.42	-1.6
3,567,427	-		HGI48_RS15860	0.50	+0.4
3,567,443	+		HGI48_RS15860	0.53	-1.8
3,567,467	+		HGI48_RS15860	0.56	+1.0
3,567,467	+		HGI48_RS15860	0.56	-1.0
3,567,467	+		HGI48_RS15860	0.56	-1.0
3,567,467	+		HGI48_RS15860	0.56	+2.0
3,567,477	+		HGI48_RS15860	0.57	-2.5
3,567,478	-		HGI48_RS15860	0.57	-0.9
3,567,499	-		HGI48_RS15860	0.60	+0.2
3,567,750	+				-1.8
3,567,750	+				+1.0
3,567,751	-				-1.0
3,567,751	-				+1.6
3,567,778	-				+0.6
3,567,778	-				+1.8
3,567,778	-				-2.0
3,567,778	-				+0.9
3,567,809	-				+1.0
3,567,809	-				-1.0
3,567,809	-				-2.9
3,567,809	-				+1.0
3,567,809	-				+2.5
3,567,830	+				-3.1
3,567,830	+				-1.0
3,567,830	+				-1.3
3,567,830	+				+0.7
3,567,831	-				+1.0
3,567,831	-				-1.8
3,567,900	+				+0.5
3,567,900	+				+1.0
3,567,901	-				+1.5
3,567,901	-				+0.9
3,567,901	-				-0.6
3,567,901	-				-1.4
3,567,903	-				+1.3
3,567,903	-				+1.4
3,567,903	-				+1.0
3,567,903	-				-1.4
3,567,924	+				-1.6
3,567,924	+				+0.7
3,567,924	+				-0.5
3,567,925	-				-3.1
3,567,925	-				-0.6
3,567,925	-				-2.9
3,567,925	-				+0.4
3,567,925	-				-1.5
3,567,925	-				+1.5
3,567,925	-				-0.0
3,568,060	+				-2.5
3,568,060	+				-3.2
3,568,060	+				-0.8
3,568,060	+				+3.5
3,568,060	+				+0.9
3,568,060	+				-0.2
3,568,060	+				-1.0
3,568,061	-				-2.7
3,568,061	-				-1.8
3,568,101	+		HGI48_RS15865	0.13	+1.2
3,568,170	-		HGI48_RS15865	0.18	-0.8
3,568,275	+		HGI48_RS15865	0.25	-2.2
3,568,275	+		HGI48_RS15865	0.25	-3.5
3,568,275	+		HGI48_RS15865	0.25	-1.1
3,568,275	+		HGI48_RS15865	0.25	-2.9
3,568,275	+		HGI48_RS15865	0.25	-1.4
3,568,275	+		HGI48_RS15865	0.25	-2.6
3,568,275	+		HGI48_RS15865	0.25	-2.2
3,568,275	+		HGI48_RS15865	0.25	-1.0
3,568,276	+		HGI48_RS15865	0.26	-1.0
3,568,276	-		HGI48_RS15865	0.26	-2.4
3,568,276	-		HGI48_RS15865	0.26	-2.5
3,568,276	-		HGI48_RS15865	0.26	-2.7
3,568,276	-		HGI48_RS15865	0.26	-1.6
3,568,276	-		HGI48_RS15865	0.26	-3.0
3,568,276	-		HGI48_RS15865	0.26	+1.0
3,568,347	+		HGI48_RS15865	0.31	-2.5
3,568,347	+		HGI48_RS15865	0.31	+1.3
3,568,347	+		HGI48_RS15865	0.31	+2.3
3,568,347	+		HGI48_RS15865	0.31	-0.3
3,568,347	+		HGI48_RS15865	0.31	-1.8
3,568,348	-		HGI48_RS15865	0.31	-2.2
3,568,348	-		HGI48_RS15865	0.31	-2.0
3,568,348	-		HGI48_RS15865	0.31	-0.0
3,568,348	-		HGI48_RS15865	0.31	-2.4
3,568,348	-		HGI48_RS15865	0.31	-0.2
3,568,412	+		HGI48_RS15865	0.36	-2.6
3,568,412	+		HGI48_RS15865	0.36	-1.8
3,568,412	+		HGI48_RS15865	0.36	-0.2
3,568,413	-		HGI48_RS15865	0.36	-1.4
3,568,440	-		HGI48_RS15865	0.38	-2.5
3,568,449	-		HGI48_RS15865	0.38	-2.0
3,568,449	-		HGI48_RS15865	0.38	+0.6
3,568,558	+		HGI48_RS15865	0.46	-0.7
3,568,558	+		HGI48_RS15865	0.46	-0.5
3,568,558	+		HGI48_RS15865	0.46	-1.4
3,568,559	-		HGI48_RS15865	0.46	+1.8
3,568,559	-		HGI48_RS15865	0.46	+1.5
3,568,559	-		HGI48_RS15865	0.46	-1.0
3,568,559	-		HGI48_RS15865	0.46	+1.6
3,568,559	-		HGI48_RS15865	0.46	+0.2
3,568,605	+		HGI48_RS15865	0.50	-1.4
3,568,605	+		HGI48_RS15865	0.50	-3.2
3,568,605	+		HGI48_RS15865	0.50	-1.9
3,568,605	+		HGI48_RS15865	0.50	-1.0
3,568,605	+				+2.4
3,568,605	+		HGI48_RS15865	0.50	-1.0
3,568,606	-		HGI48_RS15865	0.50	-0.6
3,568,606	-		HGI48_RS15865	0.50	-3.5
3,568,606	-		HGI48_RS15865	0.50	+2.5
3,568,606	-		HGI48_RS15865	0.50	-1.8
3,568,608	+		HGI48_RS15865	0.50	+0.1
3,568,608	+				-0.6
3,568,654	+				-0.6
3,568,654	+		HGI48_RS15865	0.54	-2.7
3,568,654	+		HGI48_RS15865	0.54	+0.7
3,568,654	+		HGI48_RS15865	0.54	-1.8
3,568,654	+		HGI48_RS15865	0.54	-0.0
3,568,654	+		HGI48_RS15865	0.54	-2.0
3,568,655	-		HGI48_RS15865	0.54	-1.6
3,568,655	-		HGI48_RS15865	0.54	-3.6
3,568,655	-		HGI48_RS15865	0.54	+2.3
3,568,655	-		HGI48_RS15865	0.54	-1.8
3,568,655	-		HGI48_RS15865	0.54	-1.6
3,568,655	-				-0.0
3,568,655	-		HGI48_RS15865	0.54	-1.4
3,568,682	+		HGI48_RS15865	0.56	-2.0
3,568,682	+		HGI48_RS15865	0.56	-2.5
3,568,683	-				-0.6
3,568,698	-		HGI48_RS15865	0.57	-1.8
3,568,758	+		HGI48_RS15865	0.61	-1.8
3,568,758	+				-0.6
3,568,758	+		HGI48_RS15865	0.61	-1.6
3,568,759	-		HGI48_RS15865	0.61	-1.4
3,568,759	-		HGI48_RS15865	0.61	-1.4
3,568,790	+		HGI48_RS15865	0.64	-1.8
3,568,791	-		HGI48_RS15865	0.64	-3.9
3,568,791	-		HGI48_RS15865	0.64	-1.0
3,568,923	+				-0.6
3,568,923	+		HGI48_RS15865	0.73	-1.6
3,568,924	-		HGI48_RS15865	0.73	-1.6
3,568,924	-		HGI48_RS15865	0.73	-1.6
3,568,924	-		HGI48_RS15865	0.73	+2.0
3,568,962	-		HGI48_RS15865	0.76	+1.3
3,568,998	+		HGI48_RS15865	0.79	-1.6
3,568,998	+		HGI48_RS15865	0.79	-1.1
3,568,998	+		HGI48_RS15865	0.79	+2.0
3,568,998	+		HGI48_RS15865	0.79	+0.2
3,568,998	+		HGI48_RS15865	0.79	-1.8
3,568,998	+		HGI48_RS15865	0.79	-1.8
3,568,999	-				-0.0
3,568,999	-		HGI48_RS15865	0.79	+2.1
3,568,999	-		HGI48_RS15865	0.79	-2.4
3,568,999	-		HGI48_RS15865	0.79	-1.8
3,568,999	-				+1.0
3,568,999	-		HGI48_RS15865	0.79	-3.4
3,568,999	-		HGI48_RS15865	0.79	-2.4
3,568,999	-		HGI48_RS15865	0.79	-2.0
3,568,999	-		HGI48_RS15865	0.79	-1.0
3,568,999	-		HGI48_RS15865	0.79	-3.3
3,569,025	+		HGI48_RS15865	0.81	-2.0
3,569,054	-		HGI48_RS15865	0.83	+1.8
3,569,105	+		HGI48_RS15865	0.87	-2.0
3,569,105	+				-0.0
3,569,115	-		HGI48_RS15865	0.88	-1.0
3,569,122	+		HGI48_RS15865	0.88	-1.4
3,569,122	+		HGI48_RS15865	0.88	-2.2
3,569,123	-		HGI48_RS15865	0.88	-2.4
3,569,208	-				+1.4
3,569,326	+				+0.6
3,569,327	-				-0.6
3,569,327	-				+0.1
3,569,327	-				-0.5
3,569,393	-				-1.4
3,569,393	-				-0.0
3,569,427	-				-1.6
3,569,445	+				+1.8
3,569,446	-				+0.8
3,569,446	-				+0.4
3,569,446	-				-1.4
3,569,446	-				-2.7
3,569,470	+				-1.8
3,569,470	+				+1.0
3,569,471	-				-0.0
3,569,495	-				-1.6
3,569,513	+				+0.5
3,569,513	+				-0.4
3,569,514	-				-1.6
3,569,682	+		HGI48_RS15870	0.49	-2.0
3,569,682	+		HGI48_RS15870	0.49	-1.6
3,569,682	+		HGI48_RS15870	0.49	-1.0
3,569,682	+		HGI48_RS15870	0.49	-1.4
3,569,682	+				-0.0
3,569,683	-		HGI48_RS15870	0.49	+0.2
3,569,683	-		HGI48_RS15870	0.49	+1.5
3,569,683	-		HGI48_RS15870	0.49	-1.2
3,569,683	-		HGI48_RS15870	0.49	+1.4
3,569,781	+		HGI48_RS15870	0.75	+0.3
3,569,781	+		HGI48_RS15870	0.75	+0.5
3,569,781	+		HGI48_RS15870	0.75	-1.6
3,569,781	+		HGI48_RS15870	0.75	+1.5
3,569,781	+				+3.4
3,569,782	-		HGI48_RS15870	0.75	-0.0
3,569,782	-		HGI48_RS15870	0.75	+0.4
3,569,828	+		HGI48_RS15870	0.87	+3.3
3,569,843	+				-1.4
3,569,843	+				-0.2
3,569,843	+				-0.3
3,569,844	-				+0.5
3,569,844	-				+1.8
3,569,844	-				+0.8
3,569,844	-				+1.6
3,569,864	+				-1.6
3,569,865	-				-1.0
3,569,902	-				+0.0
3,569,902	-				-1.0
3,569,988	+				+1.8
3,569,988	+				-1.8
3,569,988	+				+0.5
3,569,988	+				-1.4
3,569,988	+				+2.9
3,569,989	-				-0.6
3,569,989	-				-1.6
3,569,989	-				+1.5
3,569,991	-				-0.5
3,570,021	-				-1.8
3,570,195	+				+1.3
3,570,218	+				-0.0
3,570,219	-				-0.9
3,570,245	+				+3.6
3,570,272	+				+1.4