Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS15455

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,476,504	+		HGI48_RS15450	0.54	-2.1
3,476,507	+		HGI48_RS15450	0.54	+1.9
3,476,507	+		HGI48_RS15450	0.54	+0.4
3,476,507	+		HGI48_RS15450	0.54	-0.8
3,476,508	-		HGI48_RS15450	0.54	-1.9
3,476,508	-		HGI48_RS15450	0.54	-2.5
3,476,562	-		HGI48_RS15450	0.56	-1.7
3,476,563	+		HGI48_RS15450	0.56	+2.1
3,476,564	-		HGI48_RS15450	0.56	-1.4
3,476,564	-		HGI48_RS15450	0.56	-1.4
3,476,564	-		HGI48_RS15450	0.56	+1.2
3,476,564	-		HGI48_RS15450	0.56	-2.8
3,476,564	-		HGI48_RS15450	0.56	+1.5
3,476,564	-				+0.9
3,476,564	-		HGI48_RS15450	0.56	-1.4
3,476,664	-		HGI48_RS15450	0.61	+1.7
3,476,670	+		HGI48_RS15450	0.61	-1.7
3,476,671	-		HGI48_RS15450	0.62	+0.3
3,476,696	+		HGI48_RS15450	0.63	-0.2
3,476,696	+		HGI48_RS15450	0.63	-0.7
3,476,696	+		HGI48_RS15450	0.63	-2.1
3,476,696	+		HGI48_RS15450	0.63	+1.4
3,476,696	+		HGI48_RS15450	0.63	-1.1
3,476,697	-		HGI48_RS15450	0.63	+2.8
3,476,697	-		HGI48_RS15450	0.63	+2.6
3,476,751	-		HGI48_RS15450	0.65	+1.8
3,476,775	+		HGI48_RS15450	0.67	+1.1
3,476,826	-		HGI48_RS15450	0.69	-1.4
3,476,828	+		HGI48_RS15450	0.69	+0.6
3,476,829	-				-0.7
3,476,829	-				-0.1
3,476,829	-		HGI48_RS15450	0.69	-2.5
3,476,831	+		HGI48_RS15450	0.69	+1.8
3,476,832	-		HGI48_RS15450	0.69	+2.1
3,476,832	-		HGI48_RS15450	0.69	-1.4
3,476,832	-		HGI48_RS15450	0.69	+3.9
3,476,899	+		HGI48_RS15450	0.72	-1.9
3,476,900	-		HGI48_RS15450	0.73	-0.8
3,476,900	-		HGI48_RS15450	0.73	-1.4
3,476,900	-		HGI48_RS15450	0.73	-2.1
3,476,900	-				-0.7
3,476,900	-		HGI48_RS15450	0.73	-1.1
3,476,904	-		HGI48_RS15450	0.73	-0.1
3,476,939	+		HGI48_RS15450	0.74	+1.8
3,476,949	-		HGI48_RS15450	0.75	-0.4
3,476,976	-		HGI48_RS15450	0.76	+1.1
3,476,998	+		HGI48_RS15450	0.77	-1.9
3,477,075	-		HGI48_RS15450	0.81	+2.1
3,477,092	+		HGI48_RS15450	0.82	-1.7
3,477,093	-		HGI48_RS15450	0.82	-1.7
3,477,096	-		HGI48_RS15450	0.82	-1.4
3,477,110	+		HGI48_RS15450	0.83	-0.4
3,477,111	-		HGI48_RS15450	0.83	-0.3
3,477,238	-		HGI48_RS15450	0.89	+1.3
3,477,238	-		HGI48_RS15450	0.89	-2.5
3,477,238	-		HGI48_RS15450	0.89	-2.4
3,477,238	-		HGI48_RS15450	0.89	+1.0
3,477,239	+		HGI48_RS15450	0.89	-1.4
3,477,239	+		HGI48_RS15450	0.89	-2.2
3,477,239	+		HGI48_RS15450	0.89	+1.4
3,477,249	-		HGI48_RS15450	0.89	-3.0
3,477,290	+				-0.8
3,477,290	+				+1.0
3,477,471	+				-1.1
3,477,471	+				+1.9
3,477,555	-				-1.1
3,477,680	-		HGI48_RS15455	0.14	-1.7
3,477,734	+		HGI48_RS15455	0.18	+2.3
3,477,735	-				+0.9
3,477,761	+				-0.7
3,477,787	+		HGI48_RS15455	0.21	-1.2
3,477,788	-		HGI48_RS15455	0.21	-1.7
3,477,973	+		HGI48_RS15455	0.34	+1.2
3,477,973	+		HGI48_RS15455	0.34	-1.4
3,477,973	+		HGI48_RS15455	0.34	+0.7
3,477,973	+		HGI48_RS15455	0.34	+2.0
3,477,974	-		HGI48_RS15455	0.34	+0.9
3,478,035	+		HGI48_RS15455	0.38	-1.5
3,478,035	+		HGI48_RS15455	0.38	+2.1
3,478,036	-		HGI48_RS15455	0.38	-1.7
3,478,082	+				+3.5
3,478,082	+		HGI48_RS15455	0.41	-2.1
3,478,083	-				-0.7
3,478,127	-		HGI48_RS15455	0.44	-1.1
3,478,150	+		HGI48_RS15455	0.46	-1.4
3,478,238	-		HGI48_RS15455	0.52	+1.3
3,478,253	+		HGI48_RS15455	0.53	-3.3
3,478,253	+		HGI48_RS15455	0.53	-1.0
3,478,254	-		HGI48_RS15455	0.53	+2.0
3,478,254	-		HGI48_RS15455	0.53	+0.9
3,478,254	-		HGI48_RS15455	0.53	-3.0
3,478,292	-		HGI48_RS15455	0.55	+1.9
3,478,292	-		HGI48_RS15455	0.55	-1.7
3,478,292	-		HGI48_RS15455	0.55	-2.2
3,478,301	-		HGI48_RS15455	0.56	-3.0
3,478,320	-		HGI48_RS15455	0.57	-2.8
3,478,351	+				-0.1
3,478,366	+		HGI48_RS15455	0.60	+1.3
3,478,464	+		HGI48_RS15455	0.67	-1.4
3,478,508	-		HGI48_RS15455	0.70	+0.4
3,478,554	+		HGI48_RS15455	0.73	+3.9
3,478,554	+				+2.7
3,478,554	+		HGI48_RS15455	0.73	-2.8
3,478,554	+		HGI48_RS15455	0.73	+1.3
3,478,554	+		HGI48_RS15455	0.73	-2.5
3,478,554	+		HGI48_RS15455	0.73	-0.7
3,478,554	+		HGI48_RS15455	0.73	-1.9
3,478,555	-		HGI48_RS15455	0.73	-2.7
3,478,555	-		HGI48_RS15455	0.73	+2.0
3,478,555	-		HGI48_RS15455	0.73	+1.4
3,478,677	+				-0.1
3,478,678	-		HGI48_RS15455	0.81	-2.5
3,478,678	-				-0.1
3,478,732	+		HGI48_RS15455	0.85	-1.1
3,478,805	+				-0.7
3,478,805	+				-0.3
3,478,805	+				-2.4
3,478,805	+				+0.7
3,478,806	-				+1.2
3,478,806	-				-2.5
3,478,806	-				+1.3
3,478,806	-				+0.9
3,478,806	-				-0.3
3,478,806	-				+0.5
3,478,896	+				-1.9
3,478,897	-				-3.4
3,478,903	+				-1.9
3,478,937	+				-1.9
3,478,937	+				-1.9
3,478,945	+				-2.4
3,478,945	+				-2.1
3,478,946	-				-2.7
3,478,950	-				+1.6
3,478,961	+				+0.9
3,479,038	+				-1.4
3,479,038	+				-1.4
3,479,039	-				+3.1
3,479,053	+				-1.4
3,479,053	+				+0.9
3,479,053	+				+0.7
3,479,054	-				+0.9
3,479,054	-				-1.7
3,479,054	-				+1.4
3,479,054	-				-0.1
3,479,054	-				-1.9
3,479,057	+				-1.9
3,479,057	+				-3.1
3,479,058	-				-1.1
3,479,058	-				+1.2
3,479,143	+		HGI48_RS15460	0.17	-1.7
3,479,144	-		HGI48_RS15460	0.17	-1.1
3,479,146	+		HGI48_RS15460	0.17	-2.5
3,479,146	+		HGI48_RS15460	0.17	-1.7
3,479,313	+		HGI48_RS15460	0.31	-1.1
3,479,329	+		HGI48_RS15460	0.32	+2.6
3,479,329	+		HGI48_RS15460	0.32	+1.4
3,479,329	+		HGI48_RS15460	0.32	-1.4
3,479,330	-		HGI48_RS15460	0.32	-1.4
3,479,330	-		HGI48_RS15460	0.32	-2.8
3,479,331	+		HGI48_RS15460	0.32	-2.7
3,479,331	+		HGI48_RS15460	0.32	-3.1
3,479,332	-		HGI48_RS15460	0.32	+1.5
3,479,452	-		HGI48_RS15460	0.42	+0.4
3,479,498	-		HGI48_RS15460	0.46	-0.4
3,479,498	-		HGI48_RS15460	0.46	-2.2
3,479,660	-				+1.9
3,479,660	-		HGI48_RS15460	0.59	+0.3
3,479,662	+		HGI48_RS15460	0.60	-1.7
3,479,662	+		HGI48_RS15460	0.60	-1.1
3,479,662	+		HGI48_RS15460	0.60	-1.7
3,479,663	-		HGI48_RS15460	0.60	-3.1
3,479,663	-		HGI48_RS15460	0.60	-1.9
3,479,754	+		HGI48_RS15460	0.67	+1.3
3,479,754	+		HGI48_RS15460	0.67	-1.1
3,479,754	+		HGI48_RS15460	0.67	-1.4
3,479,756	+		HGI48_RS15460	0.67	-0.2
3,479,776	+		HGI48_RS15460	0.69	+1.4
3,479,831	+		HGI48_RS15460	0.74	+0.6
3,479,912	+		HGI48_RS15460	0.80	+1.2
3,479,945	+		HGI48_RS15460	0.83	-3.0
3,479,946	-		HGI48_RS15460	0.83	+3.2
3,479,946	-		HGI48_RS15460	0.83	-3.1