Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS14805

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,333,601	-		HGI48_RS14800	0.20	+0.7
3,333,674	+		HGI48_RS14800	0.28	-1.4
3,333,674	+		HGI48_RS14800	0.28	-1.4
3,333,674	+		HGI48_RS14800	0.28	-1.4
3,333,674	+		HGI48_RS14800	0.28	+1.2
3,333,675	-		HGI48_RS14800	0.28	-2.1
3,333,675	-		HGI48_RS14800	0.28	-2.8
3,333,679	-		HGI48_RS14800	0.28	-1.1
3,333,679	-		HGI48_RS14800	0.28	-0.2
3,333,679	-		HGI48_RS14800	0.28	-2.6
3,333,679	-		HGI48_RS14800	0.28	-1.7
3,333,752	-		HGI48_RS14800	0.36	+1.6
3,333,774	+		HGI48_RS14800	0.39	-1.4
3,333,775	-		HGI48_RS14800	0.39	-1.1
3,333,834	+		HGI48_RS14800	0.45	-2.6
3,333,835	-		HGI48_RS14800	0.45	+0.0
3,333,835	-		HGI48_RS14800	0.45	-3.0
3,333,858	+		HGI48_RS14800	0.48	-2.1
3,333,858	+		HGI48_RS14800	0.48	-1.9
3,333,858	+		HGI48_RS14800	0.48	-1.1
3,333,858	+		HGI48_RS14800	0.48	+1.1
3,333,859	-		HGI48_RS14800	0.48	-1.1
3,333,862	-		HGI48_RS14800	0.48	-1.9
3,333,862	-		HGI48_RS14800	0.48	-1.1
3,333,877	-		HGI48_RS14800	0.50	+1.2
3,333,883	+		HGI48_RS14800	0.50	+0.1
3,333,933	+				-0.7
3,333,933	+				-0.7
3,333,933	+		HGI48_RS14800	0.56	-1.7
3,333,933	+		HGI48_RS14800	0.56	+0.9
3,333,959	+				-0.7
3,333,960	-		HGI48_RS14800	0.59	-2.3
3,334,011	+		HGI48_RS14800	0.64	-1.4
3,334,011	+		HGI48_RS14800	0.64	-1.4
3,334,011	+		HGI48_RS14800	0.64	-0.8
3,334,012	-		HGI48_RS14800	0.64	+1.0
3,334,026	-				-0.7
3,334,122	+		HGI48_RS14800	0.76	+2.2
3,334,122	+		HGI48_RS14800	0.76	+0.6
3,334,170	+		HGI48_RS14800	0.81	+0.6
3,334,170	+		HGI48_RS14800	0.81	-1.9
3,334,170	+		HGI48_RS14800	0.81	+1.7
3,334,170	+		HGI48_RS14800	0.81	-0.5
3,334,171	-		HGI48_RS14800	0.82	-1.4
3,334,171	-		HGI48_RS14800	0.82	-2.8
3,334,171	-		HGI48_RS14800	0.82	+1.7
3,334,171	-		HGI48_RS14800	0.82	-1.1
3,334,172	+		HGI48_RS14800	0.82	-1.4
3,334,172	+		HGI48_RS14800	0.82	-2.7
3,334,172	+		HGI48_RS14800	0.82	+2.8
3,334,172	+		HGI48_RS14800	0.82	-1.1
3,334,172	-		HGI48_RS14800	0.82	-1.4
3,334,173	-		HGI48_RS14800	0.82	-1.1
3,334,173	-		HGI48_RS14800	0.82	+1.7
3,334,173	-		HGI48_RS14800	0.82	-1.7
3,334,205	+		HGI48_RS14800	0.85	-0.4
3,334,205	+				-0.7
3,334,258	+				-0.2
3,334,276	-				-1.7
3,334,331	+				-1.4
3,334,332	-				-0.7
3,334,335	+				-0.6
3,334,335	+				-2.1
3,334,403	-				+1.8
3,334,403	-				-2.1
3,334,459	+				+0.3
3,334,459	+				+1.7
3,334,459	+				-2.4
3,334,459	+				-2.3
3,334,459	+				+0.6
3,334,459	+				-2.6
3,334,460	-				+2.1
3,334,460	-				+0.7
3,334,461	+				-0.1
3,334,461	+				+2.2
3,334,461	+				+0.6
3,334,461	+				+3.7
3,334,461	+				+1.0
3,334,462	-				-2.3
3,334,462	-				-1.7
3,334,462	-				+0.3
3,334,462	-				+0.9
3,334,463	+				+0.8
3,334,463	+				-1.4
3,334,463	+				+0.6
3,334,463	+				-2.3
3,334,463	+				-1.3
3,334,463	+				+0.0
3,334,463	+				+0.5
3,334,464	-				+0.2
3,334,464	-				+1.2
3,334,464	-				+1.8
3,334,464	-				+0.5
3,334,469	+				+1.2
3,334,470	-				-3.0
3,334,470	-				-2.4
3,334,484	+				+2.0
3,334,484	+				+3.4
3,334,485	-				+1.7
3,334,490	+				+1.1
3,334,546	-				-2.6
3,334,546	-				+2.9
3,334,617	+		HGI48_RS14805	0.15	-2.6
3,334,617	+		HGI48_RS14805	0.15	-2.1
3,334,636	-		HGI48_RS14805	0.21	-1.2
3,334,709	+		HGI48_RS14805	0.44	-4.0
3,334,713	+				-0.7
3,334,713	+		HGI48_RS14805	0.45	+1.8
3,334,713	+		HGI48_RS14805	0.45	+1.1
3,334,713	+		HGI48_RS14805	0.45	-1.1
3,334,713	+		HGI48_RS14805	0.45	+1.1
3,334,713	+		HGI48_RS14805	0.45	-2.8
3,334,714	-		HGI48_RS14805	0.46	+1.0
3,334,728	-		HGI48_RS14805	0.50	-0.4
3,334,782	+		HGI48_RS14805	0.67	+1.8
3,334,784	+		HGI48_RS14805	0.68	+2.0
3,334,784	+		HGI48_RS14805	0.68	-1.9
3,334,785	-		HGI48_RS14805	0.68	-1.8
3,334,785	-		HGI48_RS14805	0.68	-1.7
3,334,785	-				-0.7
3,334,785	-		HGI48_RS14805	0.68	-0.9
3,334,798	+		HGI48_RS14805	0.72	-1.1
3,334,879	-				+0.3
3,334,892	-				-1.4
3,334,892	-				-0.7
3,334,910	+				-2.1
3,334,913	+				-1.4
3,334,914	-				-2.6
3,334,914	-				+3.4
3,334,949	+				-1.9
3,334,949	+				-0.7
3,334,949	+				+2.6
3,334,950	-				-0.7
3,334,950	-				-3.0
3,334,950	-				-2.7
3,334,950	-				-1.2
3,334,954	+				+0.3
3,334,954	+				-2.4
3,334,954	+				-1.7
3,334,954	+				-1.9
3,334,954	+				+6.6
3,334,954	+				+2.1
3,334,955	-				+4.2
3,334,955	-				-1.4
3,334,955	-				+0.1
3,334,955	-				+4.2
3,334,955	-				-1.7
3,334,960	-				-2.3
3,334,960	-				-1.4
3,334,960	-				-1.7
3,334,961	+				-0.1
3,334,961	+				-2.1
3,334,961	+				+1.9
3,334,961	+				-1.9
3,334,961	+				-0.7
3,334,961	+				-0.7
3,334,962	-				+3.1
3,334,962	-				-1.9
3,334,962	-				-1.7
3,334,962	-				-2.4
3,334,962	-				+1.8
3,334,994	+				-3.0
3,334,994	+				+1.7
3,334,994	+				+1.9
3,334,994	+				-3.6
3,335,019	-				+1.4
3,335,041	-				-0.7
3,335,041	-				-1.1
3,335,048	-				-1.1
3,335,048	-				+0.7
3,335,068	+				-3.3
3,335,068	+				-2.9
3,335,068	+				+3.5
3,335,068	+				-1.7
3,335,069	-				-2.3
3,335,069	-				+3.1
3,335,069	-				+1.0
3,335,069	-				+1.2
3,335,069	-				-1.7
3,335,069	-				-1.1
3,335,069	-				-1.9
3,335,069	-				+0.2
3,335,069	-				-2.3
3,335,069	-				+0.6
3,335,074	-				+1.3
3,335,082	-				-1.9
3,335,085	+				+0.9
3,335,086	-				-0.9
3,335,125	+				-3.3
3,335,125	+				+1.2
3,335,157	+				+0.7
3,335,158	-				-0.7
3,335,158	-				-1.2
3,335,188	+				-1.7
3,335,199	+				+0.9
3,335,199	+				-2.1
3,335,199	+				+0.2
3,335,222	+				-3.1
3,335,223	-				-0.5
3,335,223	-				-2.1
3,335,223	-				+1.2
3,335,223	-				+0.7
3,335,329	+				+0.4
3,335,329	+				-1.4
3,335,330	-				+0.6
3,335,330	-				+0.9
3,335,330	-				-1.4
3,335,330	-				+0.1
3,335,374	-				-0.7
3,335,374	-				+0.7
3,335,377	-				+0.2
3,335,377	-				-1.7
3,335,443	+				+0.7
3,335,443	+				+2.9
3,335,443	+				+2.4
3,335,444	-				+1.5
3,335,444	-				+3.7
3,335,444	-				-2.8
3,335,444	-				-2.9
3,335,444	-				-1.4
3,335,445	+		HGI48_RS14810	0.10	-0.3
3,335,445	+		HGI48_RS14810	0.10	-2.0
3,335,445	+		HGI48_RS14810	0.10	-0.4
3,335,446	-		HGI48_RS14810	0.11	+0.4
3,335,446	-		HGI48_RS14810	0.11	+0.4
3,335,446	-		HGI48_RS14810	0.11	-1.7
3,335,496	+				-0.1
3,335,497	-		HGI48_RS14810	0.26	+0.2
3,335,497	-		HGI48_RS14810	0.26	-1.1
3,335,532	-				+2.1
3,335,532	-		HGI48_RS14810	0.37	-2.3
3,335,542	+		HGI48_RS14810	0.40	-1.1
3,335,542	+		HGI48_RS14810	0.40	+0.1
3,335,542	+		HGI48_RS14810	0.40	+0.7
3,335,542	+		HGI48_RS14810	0.40	+0.1
3,335,542	+		HGI48_RS14810	0.40	+3.0
3,335,542	+		HGI48_RS14810	0.40	-0.1
3,335,543	-		HGI48_RS14810	0.41	-1.7
3,335,543	-				-0.7
3,335,811	-		HGI48_RS14815	0.30	+1.6