Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13835

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,081,120	+		HGI48_RS13830	0.39	+3.4
3,081,120	+		HGI48_RS13830	0.39	-2.4
3,081,384	+		HGI48_RS13830	0.60	-2.2
3,081,384	+		HGI48_RS13830	0.60	+2.2
3,081,384	+		HGI48_RS13830	0.60	+0.8
3,081,385	-				-0.8
3,081,385	-		HGI48_RS13830	0.60	+2.2
3,081,396	+		HGI48_RS13830	0.60	+0.2
3,081,397	-		HGI48_RS13830	0.61	+0.7
3,081,484	+		HGI48_RS13830	0.67	+1.6
3,081,485	-		HGI48_RS13830	0.67	-1.6
3,081,566	-		HGI48_RS13830	0.74	+1.8
3,081,568	-		HGI48_RS13830	0.74	-2.0
3,081,568	-		HGI48_RS13830	0.74	+0.5
3,081,568	-		HGI48_RS13830	0.74	+0.6
3,081,754	+		HGI48_RS13830	0.88	-1.6
3,081,920	+				-1.4
3,081,920	+				-1.8
3,081,920	+				+4.5
3,081,920	+				+2.2
3,081,920	+				-1.2
3,081,920	+				+0.1
3,081,921	-				-0.8
3,081,921	-				-2.2
3,081,921	-				-2.0
3,081,921	-				+1.8
3,081,921	-				+1.6
3,081,950	+				-2.2
3,081,950	+				+0.8
3,081,951	-				-0.2
3,081,952	-				+2.2
3,081,998	+				+2.1
3,082,074	+				+0.8
3,082,075	-				-0.8
3,082,110	+				+1.8
3,082,111	-				-2.0
3,082,133	+				-2.4
3,082,134	-				+1.1
3,082,151	+				+0.8
3,082,151	+				+0.3
3,082,151	+				-2.6
3,082,152	-				-2.2
3,082,152	-				-1.2
3,082,152	-				-1.6
3,082,195	+				-1.6
3,082,195	+				+1.8
3,082,196	-				+0.3
3,082,277	+		HGI48_RS13835	0.11	-1.5
3,082,399	+		HGI48_RS13835	0.16	-2.7
3,082,415	-		HGI48_RS13835	0.16	-1.2
3,082,427	+		HGI48_RS13835	0.17	-2.9
3,082,427	+		HGI48_RS13835	0.17	-3.5
3,082,428	-		HGI48_RS13835	0.17	-1.2
3,082,428	-		HGI48_RS13835	0.17	-2.7
3,082,428	-		HGI48_RS13835	0.17	-3.0
3,082,433	+		HGI48_RS13835	0.17	+1.3
3,082,433	+		HGI48_RS13835	0.17	+1.5
3,082,434	-		HGI48_RS13835	0.17	-2.4
3,082,434	-		HGI48_RS13835	0.17	+1.1
3,082,434	-		HGI48_RS13835	0.17	+1.2
3,082,434	-		HGI48_RS13835	0.17	-2.9
3,082,434	-		HGI48_RS13835	0.17	-0.1
3,082,434	-		HGI48_RS13835	0.17	-1.5
3,082,562	-		HGI48_RS13835	0.22	+1.6
3,082,633	+				-0.8
3,082,642	+		HGI48_RS13835	0.26	+1.6
3,082,642	+		HGI48_RS13835	0.26	+0.5
3,082,643	-		HGI48_RS13835	0.26	-0.4
3,082,693	+		HGI48_RS13835	0.28	-0.3
3,082,693	+		HGI48_RS13835	0.28	-2.0
3,082,694	-		HGI48_RS13835	0.28	+0.4
3,082,694	-		HGI48_RS13835	0.28	+2.0
3,082,749	-		HGI48_RS13835	0.30	-1.2
3,082,749	-		HGI48_RS13835	0.30	-1.8
3,082,774	-		HGI48_RS13835	0.31	+1.2
3,082,774	-		HGI48_RS13835	0.31	-2.4
3,082,779	-		HGI48_RS13835	0.31	-1.8
3,082,798	+		HGI48_RS13835	0.32	-2.0
3,082,812	+		HGI48_RS13835	0.33	-1.5
3,082,812	+		HGI48_RS13835	0.33	-3.7
3,082,813	-		HGI48_RS13835	0.33	+0.7
3,082,824	+				-0.8
3,082,824	+		HGI48_RS13835	0.33	-3.1
3,082,824	+				-0.2
3,082,824	+		HGI48_RS13835	0.33	+0.5
3,082,824	+		HGI48_RS13835	0.33	+3.2
3,082,824	+		HGI48_RS13835	0.33	-0.2
3,082,825	-		HGI48_RS13835	0.33	+1.0
3,082,825	-		HGI48_RS13835	0.33	-3.0
3,082,861	+		HGI48_RS13835	0.35	-2.9
3,082,862	-		HGI48_RS13835	0.35	-0.0
3,082,862	-				-0.8
3,082,862	-				+3.1
3,082,862	-		HGI48_RS13835	0.35	-1.5
3,082,922	+		HGI48_RS13835	0.37	-2.0
3,082,922	+				-0.8
3,082,924	+		HGI48_RS13835	0.37	-0.1
3,082,924	+		HGI48_RS13835	0.37	-0.0
3,082,924	+		HGI48_RS13835	0.37	+1.5
3,082,925	-		HGI48_RS13835	0.37	+0.5
3,082,925	-		HGI48_RS13835	0.37	+0.4
3,082,925	-		HGI48_RS13835	0.37	-0.0
3,082,925	-		HGI48_RS13835	0.37	-2.4
3,083,023	+		HGI48_RS13835	0.42	+0.8
3,083,023	+		HGI48_RS13835	0.42	-1.8
3,083,023	+		HGI48_RS13835	0.42	-1.2
3,083,024	-		HGI48_RS13835	0.42	+2.3
3,083,024	-		HGI48_RS13835	0.42	-2.0
3,083,024	-		HGI48_RS13835	0.42	+0.6
3,083,024	-				-0.8
3,083,024	-		HGI48_RS13835	0.42	+1.0
3,083,061	+		HGI48_RS13835	0.43	-2.2
3,083,062	-		HGI48_RS13835	0.43	-2.6
3,083,062	-		HGI48_RS13835	0.43	-1.5
3,083,255	-		HGI48_RS13835	0.51	-2.0
3,083,269	+		HGI48_RS13835	0.52	-1.5
3,083,269	+		HGI48_RS13835	0.52	+1.0
3,083,269	+		HGI48_RS13835	0.52	+0.4
3,083,269	+		HGI48_RS13835	0.52	-0.7
3,083,270	-		HGI48_RS13835	0.52	+0.2
3,083,270	-		HGI48_RS13835	0.52	-3.2
3,083,556	+		HGI48_RS13835	0.64	+1.2
3,083,557	-		HGI48_RS13835	0.64	+3.5
3,083,557	-		HGI48_RS13835	0.64	-2.2
3,083,579	-		HGI48_RS13835	0.65	-1.8
3,083,629	+		HGI48_RS13835	0.67	+0.5
3,083,629	+		HGI48_RS13835	0.67	-3.3
3,083,630	-		HGI48_RS13835	0.67	-0.5
3,083,692	+		HGI48_RS13835	0.69	-2.5
3,083,692	+		HGI48_RS13835	0.69	-0.1
3,083,692	+		HGI48_RS13835	0.69	-1.0
3,083,693	-		HGI48_RS13835	0.69	-1.9
3,083,703	+		HGI48_RS13835	0.70	-1.2
3,083,703	+		HGI48_RS13835	0.70	-2.5
3,083,704	-		HGI48_RS13835	0.70	+1.2
3,083,737	-				-0.8
3,083,790	-		HGI48_RS13835	0.73	-1.5
3,083,790	-		HGI48_RS13835	0.73	+0.5
3,083,872	+		HGI48_RS13835	0.77	+1.5
3,084,076	+		HGI48_RS13835	0.85	+1.5
3,084,106	+		HGI48_RS13835	0.86	+0.2
3,084,107	-		HGI48_RS13835	0.86	+1.9
3,084,107	-		HGI48_RS13835	0.86	-2.7
3,084,107	-		HGI48_RS13835	0.86	-2.7
3,084,196	+				+2.1
3,084,197	-				-1.2
3,084,197	-				-2.7
3,084,293	-				+0.7
3,084,293	-				+0.6
3,084,366	-				-2.4
3,084,427	+				-0.2
3,084,428	-				+1.4
3,084,428	-				+0.8
3,084,483	-				-1.8
3,084,488	+				+2.3
3,084,488	+				-1.2
3,084,489	-				+2.9
3,084,489	-				-1.8
3,084,492	-				-0.5
3,084,492	-				-0.8
3,084,492	-				+1.6
3,084,852	-		HGI48_RS13840	0.60	-2.9
3,084,899	+				+0.8
3,085,104	-				-2.2
3,085,153	+		HGI48_RS13845	0.15	+0.3
3,085,189	+		HGI48_RS13845	0.19	-4.4
3,085,189	+		HGI48_RS13845	0.19	-1.5
3,085,224	-		HGI48_RS13845	0.23	+0.8
3,085,246	-		HGI48_RS13845	0.26	+0.7
3,085,269	+		HGI48_RS13845	0.28	-1.5
3,085,270	-		HGI48_RS13845	0.28	-0.5
3,085,322	+		HGI48_RS13845	0.34	-1.8
3,085,376	+		HGI48_RS13845	0.40	-2.2
3,085,386	+		HGI48_RS13845	0.41	-2.2
3,085,404	-		HGI48_RS13845	0.43	-1.5