Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS13600

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,975,563	-		HGI48_RS13595	0.22	+3.2
2,975,716	+		HGI48_RS13595	0.36	+0.8
2,975,717	-		HGI48_RS13595	0.36	-3.2
2,975,717	-				-0.8
2,975,717	-		HGI48_RS13595	0.36	+2.0
2,975,743	+		HGI48_RS13595	0.38	-2.7
2,975,743	+		HGI48_RS13595	0.38	-1.6
2,975,744	-		HGI48_RS13595	0.38	-2.6
2,975,744	-		HGI48_RS13595	0.38	-3.9
2,975,750	-		HGI48_RS13595	0.39	+0.8
2,975,776	+		HGI48_RS13595	0.41	-1.6
2,975,776	+		HGI48_RS13595	0.41	-2.2
2,975,776	+		HGI48_RS13595	0.41	-3.4
2,975,777	-		HGI48_RS13595	0.41	-1.2
2,975,777	-		HGI48_RS13595	0.41	-1.8
2,975,777	-		HGI48_RS13595	0.41	-2.4
2,975,777	-		HGI48_RS13595	0.41	-1.2
2,975,777	-		HGI48_RS13595	0.41	-0.9
2,975,777	-		HGI48_RS13595	0.41	+1.2
2,975,777	-		HGI48_RS13595	0.41	-3.6
2,975,777	-				-0.2
2,975,830	-		HGI48_RS13595	0.46	+0.8
2,975,830	-		HGI48_RS13595	0.46	-0.6
2,975,855	+		HGI48_RS13595	0.48	-2.6
2,975,945	+		HGI48_RS13595	0.56	-3.3
2,975,945	+		HGI48_RS13595	0.56	+0.5
2,975,946	-		HGI48_RS13595	0.56	-2.4
2,975,946	-		HGI48_RS13595	0.56	+0.6
2,975,974	-		HGI48_RS13595	0.58	+0.8
2,975,991	+		HGI48_RS13595	0.60	-1.2
2,975,991	+		HGI48_RS13595	0.60	-0.1
2,976,108	+		HGI48_RS13595	0.70	+2.0
2,976,108	+		HGI48_RS13595	0.70	-0.2
2,976,118	-		HGI48_RS13595	0.71	+1.5
2,976,141	+		HGI48_RS13595	0.73	-1.6
2,976,141	+		HGI48_RS13595	0.73	-1.2
2,976,142	-		HGI48_RS13595	0.73	+1.0
2,976,144	+				-0.8
2,976,144	+		HGI48_RS13595	0.73	+1.1
2,976,144	+		HGI48_RS13595	0.73	+1.8
2,976,144	+		HGI48_RS13595	0.73	+0.5
2,976,145	-		HGI48_RS13595	0.73	+2.8
2,976,145	-				-0.2
2,976,181	-		HGI48_RS13595	0.77	-2.4
2,976,269	+		HGI48_RS13595	0.84	+1.2
2,976,362	+				-0.2
2,976,362	+				-2.2
2,976,362	+				-3.3
2,976,362	+				+0.8
2,976,363	-				-0.5
2,976,363	-				-2.1
2,976,363	-				-3.1
2,976,409	-				-1.2
2,976,486	-				-2.0
2,976,648	+		HGI48_RS13600	0.23	-2.0
2,976,649	-		HGI48_RS13600	0.23	+1.0
2,976,649	-		HGI48_RS13600	0.23	+2.5
2,976,649	-		HGI48_RS13600	0.23	-2.9
2,976,649	-		HGI48_RS13600	0.23	-1.8
2,976,649	-		HGI48_RS13600	0.23	+2.8
2,976,649	-		HGI48_RS13600	0.23	-3.1
2,976,652	-		HGI48_RS13600	0.24	+2.6
2,976,692	+				-0.8
2,976,704	+		HGI48_RS13600	0.30	-3.2
2,976,704	+		HGI48_RS13600	0.30	+1.7
2,976,705	-		HGI48_RS13600	0.30	+1.0
2,976,705	-		HGI48_RS13600	0.30	-4.4
2,976,705	-		HGI48_RS13600	0.30	+0.0
2,976,705	-		HGI48_RS13600	0.30	+0.0
2,976,708	+				+0.8
2,976,708	+		HGI48_RS13600	0.30	-2.0
2,976,708	+		HGI48_RS13600	0.30	-0.7
2,976,708	+		HGI48_RS13600	0.30	-1.6
2,976,709	-		HGI48_RS13600	0.30	+1.3
2,976,960	+		HGI48_RS13600	0.58	+1.5
2,976,967	+		HGI48_RS13600	0.59	+1.7
2,976,967	+		HGI48_RS13600	0.59	-2.9
2,976,967	+		HGI48_RS13600	0.59	-3.7
2,976,967	+		HGI48_RS13600	0.59	+2.8
2,976,967	+		HGI48_RS13600	0.59	+2.0
2,976,967	+		HGI48_RS13600	0.59	+0.5
2,976,967	+		HGI48_RS13600	0.59	-2.6
2,976,967	+		HGI48_RS13600	0.59	-2.4
2,976,968	-		HGI48_RS13600	0.59	+2.0
2,976,968	-		HGI48_RS13600	0.59	+0.2
2,976,968	-		HGI48_RS13600	0.59	+0.7
2,976,991	+		HGI48_RS13600	0.62	-1.2
2,977,083	+		HGI48_RS13600	0.72	-2.0
2,977,083	+		HGI48_RS13600	0.72	+1.6
2,977,084	-		HGI48_RS13600	0.72	-1.8
2,977,086	+		HGI48_RS13600	0.73	-2.0
2,977,087	-		HGI48_RS13600	0.73	+0.8
2,977,105	+		HGI48_RS13600	0.75	-1.2
2,977,105	+		HGI48_RS13600	0.75	+0.1
2,977,105	+		HGI48_RS13600	0.75	+2.9
2,977,105	+		HGI48_RS13600	0.75	+0.1
2,977,105	+		HGI48_RS13600	0.75	-3.3
2,977,105	+		HGI48_RS13600	0.75	-2.2
2,977,105	+		HGI48_RS13600	0.75	-2.6
2,977,105	+		HGI48_RS13600	0.75	-2.9
2,977,105	+				-0.8
2,977,105	+		HGI48_RS13600	0.75	-2.8
2,977,106	-		HGI48_RS13600	0.75	-3.5
2,977,106	-		HGI48_RS13600	0.75	+1.3
2,977,106	-		HGI48_RS13600	0.75	-1.2
2,977,106	-		HGI48_RS13600	0.75	+1.0
2,977,107	+		HGI48_RS13600	0.75	+0.2
2,977,108	-		HGI48_RS13600	0.75	+1.0
2,977,108	-		HGI48_RS13600	0.75	+2.6
2,977,185	-		HGI48_RS13600	0.84	+0.9
2,977,193	+		HGI48_RS13600	0.85	+1.1
2,977,193	+		HGI48_RS13600	0.85	-2.0
2,977,193	+		HGI48_RS13600	0.85	+2.1
2,977,193	+		HGI48_RS13600	0.85	+1.6
2,977,193	+		HGI48_RS13600	0.85	-1.2
2,977,193	+		HGI48_RS13600	0.85	+0.7
2,977,193	+		HGI48_RS13600	0.85	+3.2
2,977,194	-		HGI48_RS13600	0.85	-1.6
2,977,194	-		HGI48_RS13600	0.85	+1.3
2,977,243	+				-1.2
2,977,243	+				+0.8
2,977,243	+				-2.8
2,977,243	+				-0.9
2,977,244	-				+1.0
2,977,287	+				+0.3
2,977,287	+				-0.2
2,977,287	+				+1.9
2,977,287	+				+1.2
2,977,287	+				+0.1
2,977,288	-				+0.3
2,977,288	-				+0.9
2,977,296	+				-1.8
2,977,296	+				-2.4
2,977,297	-				-2.0
2,977,318	-				-1.0
2,977,318	-				+1.5
2,977,319	+				+0.5
2,977,341	+				+1.0
2,977,341	+				+2.1
2,977,341	+				+2.8
2,977,341	+				+0.3
2,977,342	-				-2.4
2,977,342	-				-2.4
2,977,342	-				-0.2
2,977,342	-				+1.8
2,977,342	-				+2.0
2,977,342	-				+1.1
2,977,345	+				-3.0
2,977,369	+				+0.5
2,977,371	+				-1.2
2,977,371	+				+1.2
2,977,395	-				+0.2
2,977,476	+				+0.8
2,977,501	+				+0.2
2,977,501	+				+0.2
2,977,541	-				+1.8
2,977,564	+		HGI48_RS13605	0.18	+1.4
2,977,581	+		HGI48_RS13605	0.21	+1.1
2,977,581	+		HGI48_RS13605	0.21	+0.4
2,977,582	-		HGI48_RS13605	0.21	+2.9
2,977,606	-		HGI48_RS13605	0.25	-0.2
2,977,608	+		HGI48_RS13605	0.25	-1.6
2,977,608	+		HGI48_RS13605	0.25	+1.8
2,977,608	+		HGI48_RS13605	0.25	+1.5
2,977,608	+		HGI48_RS13605	0.25	-0.8
2,977,608	+		HGI48_RS13605	0.25	-2.2
2,977,608	+		HGI48_RS13605	0.25	+2.2
2,977,608	+		HGI48_RS13605	0.25	-1.6
2,977,608	+		HGI48_RS13605	0.25	+2.9
2,977,609	-		HGI48_RS13605	0.25	-2.2
2,977,609	-		HGI48_RS13605	0.25	+0.9
2,977,609	-		HGI48_RS13605	0.25	+3.0
2,977,609	-		HGI48_RS13605	0.25	+2.3
2,977,629	+				-0.2
2,977,629	+		HGI48_RS13605	0.29	-0.5
2,977,629	+		HGI48_RS13605	0.29	-2.0
2,977,629	+		HGI48_RS13605	0.29	-0.3
2,977,629	+				+4.2
2,977,630	-		HGI48_RS13605	0.29	+0.5
2,977,630	-		HGI48_RS13605	0.29	-0.8
2,977,630	-		HGI48_RS13605	0.29	+1.8
2,977,630	-		HGI48_RS13605	0.29	+1.2
2,977,630	-		HGI48_RS13605	0.29	-0.5
2,977,645	+		HGI48_RS13605	0.32	+1.5
2,977,645	+		HGI48_RS13605	0.32	-2.2
2,977,645	+		HGI48_RS13605	0.32	-1.6
2,977,646	-		HGI48_RS13605	0.32	+0.1
2,977,646	-		HGI48_RS13605	0.32	+1.1
2,977,646	-		HGI48_RS13605	0.32	-1.2
2,977,646	-		HGI48_RS13605	0.32	+1.1
2,977,646	-		HGI48_RS13605	0.32	+1.4
2,977,646	-		HGI48_RS13605	0.32	+1.2
2,977,646	-		HGI48_RS13605	0.32	-2.0
2,977,646	-		HGI48_RS13605	0.32	-2.0
2,977,650	+		HGI48_RS13605	0.32	+1.8
2,977,737	-		HGI48_RS13605	0.47	+1.2
2,977,737	-		HGI48_RS13605	0.47	+2.1
2,977,757	-		HGI48_RS13605	0.51	-1.6
2,977,803	-		HGI48_RS13605	0.59	-1.2
2,977,811	+		HGI48_RS13605	0.60	-3.2
2,977,811	+				+1.8
2,977,811	+		HGI48_RS13605	0.60	+2.3
2,977,812	-		HGI48_RS13605	0.60	+0.4
2,977,812	-		HGI48_RS13605	0.60	-2.6
2,977,812	-		HGI48_RS13605	0.60	+0.8
2,977,812	-		HGI48_RS13605	0.60	+1.7
2,977,812	-		HGI48_RS13605	0.60	-0.4
2,977,830	+		HGI48_RS13605	0.64	+1.8
2,977,861	-		HGI48_RS13605	0.69	-0.4
2,977,893	+		HGI48_RS13605	0.74	+2.6
2,977,894	-		HGI48_RS13605	0.75	+1.0
2,977,894	-		HGI48_RS13605	0.75	+3.2
2,977,900	+		HGI48_RS13605	0.76	+0.3
2,977,901	-		HGI48_RS13605	0.76	+2.9
2,977,901	-		HGI48_RS13605	0.76	+1.4
2,977,908	+		HGI48_RS13605	0.77	+0.3
2,977,908	+		HGI48_RS13605	0.77	-0.2
2,977,909	-				-0.8
2,977,909	-		HGI48_RS13605	0.77	+3.7
2,977,910	+		HGI48_RS13605	0.77	+1.6
2,977,910	+		HGI48_RS13605	0.77	+1.2
2,977,936	+		HGI48_RS13605	0.82	-2.0
2,977,937	-		HGI48_RS13605	0.82	+2.0
2,977,937	-		HGI48_RS13605	0.82	+1.5
2,977,963	+		HGI48_RS13605	0.87	+0.8
2,977,964	-		HGI48_RS13605	0.87	+0.1
2,978,010	+				-2.9
2,978,010	+				+1.9
2,978,010	+				+2.2
2,978,010	+				-1.8
2,978,011	-				-0.4
2,978,011	-				+0.9
2,978,011	-				-2.9
2,978,025	+				+1.8
2,978,026	-				+2.2
2,978,026	-				+0.6
2,978,044	+				-0.1
2,978,045	-				-2.0
2,978,045	-				+0.9
2,978,045	-				-1.8
2,978,057	+				-0.2
2,978,091	+				+0.8
2,978,091	+		HGI48_RS13610	0.14	+0.4
2,978,092	-		HGI48_RS13610	0.14	-1.2
2,978,094	+		HGI48_RS13610	0.15	-1.6
2,978,094	+		HGI48_RS13610	0.15	+1.6
2,978,094	+		HGI48_RS13610	0.15	+0.9
2,978,095	-		HGI48_RS13610	0.15	-0.7
2,978,095	-		HGI48_RS13610	0.15	-1.0
2,978,120	+		HGI48_RS13610	0.22	+1.0
2,978,161	-		HGI48_RS13610	0.34	+1.3
2,978,163	+		HGI48_RS13610	0.34	-0.0
2,978,163	+		HGI48_RS13610	0.34	+1.1
2,978,163	+		HGI48_RS13610	0.34	+1.2
2,978,163	+		HGI48_RS13610	0.34	+1.5
2,978,163	+		HGI48_RS13610	0.34	-3.1
2,978,164	-		HGI48_RS13610	0.34	+2.0
2,978,164	-		HGI48_RS13610	0.34	-1.8
2,978,164	-		HGI48_RS13610	0.34	-1.2
2,978,164	-		HGI48_RS13610	0.34	+1.7
2,978,164	-		HGI48_RS13610	0.34	+1.4
2,978,164	-		HGI48_RS13610	0.34	-1.2
2,978,168	+		HGI48_RS13610	0.36	+1.0
2,978,174	+		HGI48_RS13610	0.37	+2.5
2,978,175	-		HGI48_RS13610	0.38	+0.9
2,978,175	-		HGI48_RS13610	0.38	-1.8
2,978,202	+		HGI48_RS13610	0.45	-1.8
2,978,202	+		HGI48_RS13610	0.45	+1.8
2,978,202	+		HGI48_RS13610	0.45	+2.6
2,978,202	+		HGI48_RS13610	0.45	+0.1
2,978,202	+		HGI48_RS13610	0.45	-2.2
2,978,202	+		HGI48_RS13610	0.45	-3.0
2,978,203	-		HGI48_RS13610	0.46	+0.2
2,978,205	+		HGI48_RS13610	0.46	+1.4
2,978,206	-		HGI48_RS13610	0.46	-2.4
2,978,206	-		HGI48_RS13610	0.46	+1.6
2,978,319	+		HGI48_RS13610	0.79	+1.3
2,978,320	-		HGI48_RS13610	0.79	+1.9
2,978,320	-		HGI48_RS13610	0.79	+1.3
2,978,320	-		HGI48_RS13610	0.79	+1.2