Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09870

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,132,030	+				+0.5
2,132,030	+				-0.1
2,132,051	+				+0.6
2,132,051	+				+0.3
2,132,051	+				+1.7
2,132,051	+				-0.5
2,132,068	+				-1.9
2,132,068	+				-1.7
2,132,068	+				-0.9
2,132,069	-				+0.5
2,132,069	-				-1.4
2,132,089	-				+2.4
2,132,089	-				-1.7
2,132,089	-				-1.4
2,132,089	-				-1.7
2,132,098	-				-1.5
2,132,150	-				-0.4
2,132,185	+				-1.4
2,132,185	+				+0.4
2,132,190	+				-2.2
2,132,190	+				-1.4
2,132,191	-				-0.9
2,132,191	-				-2.2
2,132,197	+				-0.6
2,132,198	-				+0.2
2,132,204	-				-1.4
2,132,204	-				-1.7
2,132,216	-				-1.7
2,132,244	+				-0.4
2,132,248	+				-2.4
2,132,248	+				-0.4
2,132,248	+				-2.8
2,132,249	-				+0.1
2,132,259	+				+0.7
2,132,260	-				-1.4
2,132,289	+				+1.5
2,132,290	-				-0.2
2,132,310	+				+1.4
2,132,314	+				+2.1
2,132,314	+				+2.3
2,132,315	-				-2.2
2,132,363	+				+0.4
2,132,413	+				+1.1
2,132,413	+				+0.3
2,132,414	-				+0.2
2,132,416	+				-2.2
2,132,416	+				-0.4
2,132,416	+				-3.1
2,132,416	+				-1.7
2,132,417	-				-1.7
2,132,417	-				-2.8
2,132,454	+				+0.8
2,132,536	+		HGI48_RS09870	0.15	+1.5
2,132,536	+		HGI48_RS09870	0.15	-1.9
2,132,536	+		HGI48_RS09870	0.15	+2.2
2,132,536	+		HGI48_RS09870	0.15	+0.9
2,132,536	+		HGI48_RS09870	0.15	+0.3
2,132,536	+				-0.4
2,132,536	+		HGI48_RS09870	0.15	+0.7
2,132,536	+		HGI48_RS09870	0.15	+2.4
2,132,536	+		HGI48_RS09870	0.15	-2.0
2,132,537	-		HGI48_RS09870	0.16	+2.6
2,132,537	-		HGI48_RS09870	0.16	-0.5
2,132,537	-		HGI48_RS09870	0.16	+0.4
2,132,537	-		HGI48_RS09870	0.16	+1.1
2,132,537	-		HGI48_RS09870	0.16	-2.7
2,132,537	-		HGI48_RS09870	0.16	+3.3
2,132,537	-		HGI48_RS09870	0.16	+1.6
2,132,538	+		HGI48_RS09870	0.16	-0.6
2,132,539	-		HGI48_RS09870	0.16	-0.4
2,132,604	+		HGI48_RS09870	0.21	+0.5
2,132,613	+		HGI48_RS09870	0.21	+1.2
2,132,614	-		HGI48_RS09870	0.21	-3.4
2,132,614	-		HGI48_RS09870	0.21	+1.2
2,132,635	+				-0.9
2,132,635	+		HGI48_RS09870	0.23	-1.4
2,132,635	+		HGI48_RS09870	0.23	-1.7
2,132,636	-		HGI48_RS09870	0.23	-2.9
2,132,636	-				-0.4
2,132,644	+		HGI48_RS09870	0.24	-1.9
2,132,645	-		HGI48_RS09870	0.24	-1.7
2,132,709	+		HGI48_RS09870	0.29	-0.4
2,132,710	-		HGI48_RS09870	0.29	+0.5
2,132,710	-		HGI48_RS09870	0.29	-1.4
2,132,714	+		HGI48_RS09870	0.29	+0.5
2,132,714	+		HGI48_RS09870	0.29	+0.9
2,132,715	-		HGI48_RS09870	0.29	+0.5
2,132,715	-				-0.9
2,132,715	-		HGI48_RS09870	0.29	-2.2
2,132,770	-				-0.9
2,132,770	-		HGI48_RS09870	0.33	-1.9
2,132,889	+		HGI48_RS09870	0.42	-1.9
2,132,890	-				-0.9
2,132,890	-		HGI48_RS09870	0.42	-1.7
2,132,894	+		HGI48_RS09870	0.43	+0.6
2,132,894	+		HGI48_RS09870	0.43	-1.9
2,132,895	-		HGI48_RS09870	0.43	+1.1
2,132,898	+		HGI48_RS09870	0.43	-0.2
2,132,898	+		HGI48_RS09870	0.43	-1.9
2,132,899	-				+2.9
2,132,899	-		HGI48_RS09870	0.43	-1.4
2,132,920	+		HGI48_RS09870	0.45	-2.4
2,132,920	+		HGI48_RS09870	0.45	+1.8
2,132,920	+		HGI48_RS09870	0.45	+2.3
2,132,920	+		HGI48_RS09870	0.45	-4.6
2,132,921	-		HGI48_RS09870	0.45	-2.5
2,132,921	-		HGI48_RS09870	0.45	-2.2
2,132,921	-				+2.8
2,133,061	+				+0.1
2,133,061	+		HGI48_RS09870	0.55	-2.7
2,133,181	+		HGI48_RS09870	0.64	-1.4
2,133,181	+		HGI48_RS09870	0.64	-1.4
2,133,182	-		HGI48_RS09870	0.64	+0.6
2,133,182	-				-0.4
2,133,182	-		HGI48_RS09870	0.64	-0.9
2,133,182	-		HGI48_RS09870	0.64	-2.4
2,133,182	-		HGI48_RS09870	0.64	-1.4
2,133,234	+		HGI48_RS09870	0.68	-1.7
2,133,234	+				+1.6
2,133,303	+		HGI48_RS09870	0.74	+1.9
2,133,304	-		HGI48_RS09870	0.74	-2.8
2,133,304	-		HGI48_RS09870	0.74	-1.9
2,133,316	+		HGI48_RS09870	0.75	-1.9
2,133,316	+		HGI48_RS09870	0.75	+1.8
2,133,317	-		HGI48_RS09870	0.75	-2.2
2,133,317	-				-0.9
2,133,385	+		HGI48_RS09870	0.80	-2.2
2,133,385	+		HGI48_RS09870	0.80	+1.4
2,133,386	-		HGI48_RS09870	0.80	-1.9
2,133,386	-		HGI48_RS09870	0.80	+0.5
2,133,412	+		HGI48_RS09870	0.82	+1.4
2,133,437	-		HGI48_RS09870	0.84	-1.7
2,133,528	+				-1.9
2,133,607	+				+1.4
2,133,607	+				+2.7
2,133,609	+				+0.5
2,133,610	-				-0.6
2,133,610	-				-0.9
2,133,650	-				+0.6
2,133,704	+				+1.5
2,133,705	-				-1.7
2,133,705	-				+0.5
2,133,709	+				+0.2
2,133,710	-				+1.8
2,133,812	+				+1.4
2,133,812	+				+1.8
2,133,812	+				+3.5
2,133,812	+				+1.5
2,133,812	+				-1.4
2,133,812	+				+1.0
2,133,812	+				-0.4
2,133,813	-				-0.9
2,133,813	-				+1.8
2,133,813	-				+0.7
2,133,813	-				-0.5
2,133,813	-				+0.8
2,133,813	-				-3.1
2,133,816	+				-2.5
2,133,816	+				+0.2
2,133,816	+				-2.4
2,133,816	+				-3.7
2,133,817	-				-1.3
2,133,817	-				-0.4
2,133,817	-				+0.9
2,133,838	-				-2.2
2,133,870	+				+0.3
2,133,871	-				+2.6
2,133,871	-				-2.2
2,133,911	+				+1.1
2,133,991	-				+2.2
2,133,991	-				-3.2
2,134,002	+		HGI48_RS09875	0.10	+1.8
2,134,002	+		HGI48_RS09875	0.10	+1.1
2,134,002	+		HGI48_RS09875	0.10	+0.3
2,134,002	+		HGI48_RS09875	0.10	-2.5
2,134,002	+		HGI48_RS09875	0.10	-1.7
2,134,003	-				-0.9
2,134,003	-		HGI48_RS09875	0.10	-2.8
2,134,003	-		HGI48_RS09875	0.10	+1.1
2,134,003	-		HGI48_RS09875	0.10	+1.5
2,134,011	+		HGI48_RS09875	0.11	-1.1
2,134,011	+		HGI48_RS09875	0.11	+0.9
2,134,011	+		HGI48_RS09875	0.11	-1.0
2,134,011	+		HGI48_RS09875	0.11	+1.2
2,134,012	-		HGI48_RS09875	0.11	+1.9
2,134,012	-		HGI48_RS09875	0.11	+0.1
2,134,012	-		HGI48_RS09875	0.11	-0.1
2,134,012	-				-0.4
2,134,053	+		HGI48_RS09875	0.16	-0.2
2,134,053	+		HGI48_RS09875	0.16	+0.6
2,134,053	+				+3.5
2,134,053	+		HGI48_RS09875	0.16	+2.1
2,134,053	+		HGI48_RS09875	0.16	-2.5
2,134,054	-		HGI48_RS09875	0.16	-1.9
2,134,054	-				-0.9
2,134,055	+		HGI48_RS09875	0.16	-2.2
2,134,055	+		HGI48_RS09875	0.16	+2.6
2,134,055	+		HGI48_RS09875	0.16	-0.1
2,134,056	-		HGI48_RS09875	0.16	+0.2
2,134,056	-		HGI48_RS09875	0.16	-2.2
2,134,056	-		HGI48_RS09875	0.16	+1.6
2,134,056	-		HGI48_RS09875	0.16	-2.7
2,134,086	+		HGI48_RS09875	0.19	+3.0
2,134,086	+		HGI48_RS09875	0.19	+0.9
2,134,086	+				-0.4
2,134,086	+		HGI48_RS09875	0.19	+0.8
2,134,170	-		HGI48_RS09875	0.29	-1.4
2,134,437	+				-0.9
2,134,487	+		HGI48_RS09875	0.64	+0.8
2,134,488	-		HGI48_RS09875	0.64	-1.7
2,134,488	-		HGI48_RS09875	0.64	+1.7
2,134,650	+				-0.9
2,134,650	+		HGI48_RS09875	0.82	-2.2
2,134,650	+		HGI48_RS09875	0.82	+1.0
2,134,651	-		HGI48_RS09875	0.82	+2.1
2,134,651	-				-0.9