Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS09375

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,016,928	+				-0.9
2,017,081	+				-0.3
2,017,091	+				-2.1
2,017,091	+				+2.3
2,017,119	+				-1.3
2,017,119	+				+0.3
2,017,119	+				-0.3
2,017,119	+				-2.3
2,017,120	-				+0.7
2,017,120	-				-2.8
2,017,120	-				-2.1
2,017,120	-				-1.9
2,017,121	+				-0.9
2,017,121	+				-1.9
2,017,121	+				+0.0
2,017,121	+				+0.6
2,017,121	+				-0.9
2,017,121	+				-0.9
2,017,122	-				-3.7
2,017,122	-				-2.5
2,017,122	-				-1.6
2,017,122	-				+2.7
2,017,123	+				-1.9
2,017,123	+				-1.3
2,017,157	+				-0.7
2,017,157	+				-1.9
2,017,157	+				+0.8
2,017,158	-				+1.4
2,017,215	+				+1.6
2,017,216	-				-2.3
2,017,226	-				+0.4
2,017,226	-				-3.2
2,017,241	+				-0.9
2,017,366	+				+1.7
2,017,369	+				-1.6
2,017,507	-				-1.9
2,017,538	+				-1.6
2,017,538	+				+0.8
2,017,539	-				-2.6
2,017,539	-				+1.1
2,017,539	-				-2.1
2,017,580	+				+3.0
2,017,580	+				-0.9
2,017,580	+				-1.9
2,017,581	-				+2.0
2,017,581	-				+2.5
2,017,581	-				-0.2
2,017,682	+				+0.2
2,017,682	+				+0.3
2,017,682	+				+1.6
2,017,682	+				-1.6
2,017,683	-				-0.9
2,017,686	+				-0.9
2,017,687	-				-1.3
2,017,688	+				-1.6
2,017,689	-				-1.6
2,017,704	-				-2.3
2,017,782	+		HGI48_RS09375	0.11	-1.3
2,017,782	+		HGI48_RS09375	0.11	-2.1
2,017,782	+		HGI48_RS09375	0.11	-0.2
2,017,783	-		HGI48_RS09375	0.11	+0.3
2,017,783	-		HGI48_RS09375	0.11	-1.6
2,017,783	-		HGI48_RS09375	0.11	+1.3
2,017,783	-		HGI48_RS09375	0.11	-2.3
2,017,816	+		HGI48_RS09375	0.13	+1.8
2,017,816	+		HGI48_RS09375	0.13	+0.3
2,017,817	-		HGI48_RS09375	0.13	-1.3
2,017,914	-				-0.3
2,017,929	-		HGI48_RS09375	0.20	+0.7
2,017,929	-				-0.9
2,017,929	-		HGI48_RS09375	0.20	-1.3
2,017,929	-		HGI48_RS09375	0.20	+2.7
2,018,064	+				-0.9
2,018,064	+				-0.3
2,018,064	+		HGI48_RS09375	0.28	-2.1
2,018,064	+		HGI48_RS09375	0.28	+1.8
2,018,064	+		HGI48_RS09375	0.28	+1.5
2,018,064	+		HGI48_RS09375	0.28	-2.6
2,018,064	+		HGI48_RS09375	0.28	+1.7
2,018,064	+		HGI48_RS09375	0.28	+1.5
2,018,064	+		HGI48_RS09375	0.28	+1.6
2,018,064	+				-0.9
2,018,064	+		HGI48_RS09375	0.28	+1.4
2,018,065	-		HGI48_RS09375	0.28	+1.2
2,018,065	-		HGI48_RS09375	0.28	-1.6
2,018,065	-		HGI48_RS09375	0.28	+0.3
2,018,065	-				-0.9
2,018,065	-		HGI48_RS09375	0.28	-3.3
2,018,065	-		HGI48_RS09375	0.28	+0.9
2,018,065	-		HGI48_RS09375	0.28	+1.3
2,018,065	-		HGI48_RS09375	0.28	+0.2
2,018,065	-				-0.3
2,018,065	-		HGI48_RS09375	0.28	-2.1
2,018,066	+		HGI48_RS09375	0.28	-1.3
2,018,066	+		HGI48_RS09375	0.28	-4.4
2,018,067	-				+1.7
2,018,067	-		HGI48_RS09375	0.28	-2.1
2,018,106	+		HGI48_RS09375	0.31	+0.5
2,018,107	-		HGI48_RS09375	0.31	-1.1
2,018,147	-		HGI48_RS09375	0.33	+0.2
2,018,176	+		HGI48_RS09375	0.35	-2.3
2,018,177	-		HGI48_RS09375	0.35	-0.1
2,018,177	-		HGI48_RS09375	0.35	+1.3
2,018,241	+		HGI48_RS09375	0.39	+1.4
2,018,241	+		HGI48_RS09375	0.39	+1.8
2,018,355	+				+2.7
2,018,356	-		HGI48_RS09375	0.46	+1.9
2,018,357	+		HGI48_RS09375	0.46	+1.4
2,018,358	-		HGI48_RS09375	0.46	+1.0
2,018,393	-		HGI48_RS09375	0.48	+0.6
2,018,406	-		HGI48_RS09375	0.49	-0.0
2,018,454	-		HGI48_RS09375	0.51	-1.5
2,018,454	-		HGI48_RS09375	0.51	+0.5
2,018,879	+		HGI48_RS09375	0.77	+1.2
2,019,283	+				-1.9
2,019,283	+				+0.4
2,019,373	-				+1.4
2,019,380	+				+2.4
2,019,418	-				-0.9
2,019,420	-				-1.3
2,019,420	-				+4.0
2,019,469	+				-1.3
2,019,471	+				+0.4
2,019,553	-				-2.1
2,019,553	-				-0.1
2,019,560	+				-1.3
2,019,578	-				-2.9
2,019,615	-				-0.6
2,019,628	+				-1.9
2,019,629	-				-2.1
2,019,629	-				-0.9
2,019,629	-				-0.3
2,019,632	+				+0.7
2,019,633	-				-0.1
2,019,633	-				+0.8
2,019,633	-				-1.6
2,019,656	+				-1.3
2,019,658	+				+0.7
2,019,658	+				-2.6
2,019,659	-				+1.0
2,019,701	-				+1.7
2,019,729	+				+1.1
2,019,783	-				-1.3
2,019,786	+				-0.3
2,019,786	+				-0.8
2,019,786	+				-1.3
2,019,786	+				-2.5
2,019,786	+				-1.9
2,019,786	+				+0.3
2,019,787	-				+0.7
2,019,787	-				+0.5
2,019,787	-				+0.7
2,019,787	-				+2.8
2,019,788	+				-0.3
2,019,788	+				-1.3
2,019,788	+				-2.3
2,019,788	+				-1.6
2,019,789	-				+0.5
2,019,792	+				+1.3
2,019,792	+				-0.9
2,019,792	+				-0.8
2,019,792	+				+2.1
2,019,792	+				+0.5
2,019,792	+				+1.4
2,019,793	-				-2.8
2,019,793	-				-1.6
2,019,855	+		HGI48_RS09380	0.13	-0.2
2,019,856	-		HGI48_RS09380	0.13	-2.3
2,019,856	-		HGI48_RS09380	0.13	-1.3
2,019,920	+		HGI48_RS09380	0.17	-1.3
2,019,920	+		HGI48_RS09380	0.17	-2.1
2,019,921	-		HGI48_RS09380	0.17	+2.0
2,019,992	+				+2.7
2,019,992	+				-0.9
2,019,998	+		HGI48_RS09380	0.22	-3.1
2,019,998	+		HGI48_RS09380	0.22	+0.0
2,019,998	+		HGI48_RS09380	0.22	+0.9
2,019,998	+		HGI48_RS09380	0.22	-1.6
2,019,999	-		HGI48_RS09380	0.22	-1.6
2,019,999	-		HGI48_RS09380	0.22	+0.4
2,020,002	-		HGI48_RS09380	0.22	+2.5
2,020,037	+				+3.8
2,020,042	-		HGI48_RS09380	0.24	-1.6
2,020,062	-		HGI48_RS09380	0.25	-1.3
2,020,140	+		HGI48_RS09380	0.30	+1.3
2,020,140	+		HGI48_RS09380	0.30	+0.1
2,020,140	+		HGI48_RS09380	0.30	+1.7
2,020,140	+		HGI48_RS09380	0.30	-1.4
2,020,141	-		HGI48_RS09380	0.30	+1.2
2,020,150	+		HGI48_RS09380	0.31	-0.1
2,020,167	+		HGI48_RS09380	0.32	+0.9
2,020,167	+		HGI48_RS09380	0.32	-2.6
2,020,170	-		HGI48_RS09380	0.32	+1.4
2,020,190	+		HGI48_RS09380	0.33	-0.2
2,020,193	+		HGI48_RS09380	0.33	+0.8
2,020,194	-		HGI48_RS09380	0.33	-1.6
2,020,194	-		HGI48_RS09380	0.33	-0.1
2,020,210	+		HGI48_RS09380	0.34	+0.5
2,020,211	-		HGI48_RS09380	0.34	-1.3
2,020,213	+		HGI48_RS09380	0.34	+0.1
2,020,213	+		HGI48_RS09380	0.34	+4.1
2,020,213	+		HGI48_RS09380	0.34	+0.8