Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08525

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,834,520	-		HGI48_RS08510	0.72	-1.6
1,834,535	+		HGI48_RS08510	0.73	+0.1
1,834,535	+		HGI48_RS08510	0.73	-3.5
1,834,535	+				-0.8
1,834,535	+		HGI48_RS08510	0.73	-1.6
1,834,535	+		HGI48_RS08510	0.73	+1.0
1,834,536	-		HGI48_RS08510	0.73	-1.2
1,834,536	-		HGI48_RS08510	0.73	-1.2
1,834,536	-		HGI48_RS08510	0.73	-0.2
1,834,582	+		HGI48_RS08510	0.78	-2.0
1,834,583	-		HGI48_RS08510	0.78	-1.2
1,834,583	-				-0.8
1,834,675	+		HGI48_RS08510	0.88	-1.2
1,834,675	+		HGI48_RS08510	0.88	-1.2
1,834,676	-		HGI48_RS08510	0.89	+1.5
1,834,676	-		HGI48_RS08510	0.89	+0.4
1,834,676	-		HGI48_RS08510	0.89	-1.6
1,834,676	-				+2.0
1,834,686	+		HGI48_RS08510	0.90	-1.6
1,834,686	+		HGI48_RS08510	0.90	+0.2
1,834,686	+		HGI48_RS08510	0.90	-2.0
1,834,687	-		HGI48_RS08510	0.90	+3.6
1,834,696	+				-1.6
1,834,696	+				+0.4
1,834,697	-				+0.8
1,834,697	-				-0.8
1,834,697	-				+1.6
1,834,699	+				-1.6
1,834,699	+				-0.1
1,834,699	+				-3.0
1,834,699	+				+1.9
1,834,700	-				+0.5
1,834,701	+				-2.0
1,834,701	+				-0.8
1,834,701	+				+3.0
1,834,702	-				-1.2
1,834,718	+				-0.6
1,834,748	-				-1.2
1,834,774	+				+0.4
1,834,774	+				+2.4
1,834,774	+				-1.2
1,834,775	-				+0.8
1,834,778	+				+0.0
1,834,778	+				+1.8
1,834,778	+				+2.4
1,834,778	+				-3.8
1,834,779	-				+0.6
1,834,779	-				+2.0
1,834,779	-				-2.0
1,834,833	+				-1.8
1,834,833	+				-2.0
1,834,833	+				+0.8
1,834,833	+				-1.8
1,834,834	-				-1.8
1,834,834	-				+0.5
1,834,834	-				+0.8
1,834,836	-				-2.0
1,834,864	+				-2.4
1,834,878	+				-0.5
1,834,878	+				-0.6
1,834,879	-				-1.6
1,834,910	+				+1.6
1,834,910	+				-1.2
1,834,910	+				-0.8
1,834,911	-				+2.9
1,834,966	-		HGI48_RS08515	0.17	+0.2
1,834,966	-		HGI48_RS08515	0.17	+0.4
1,834,966	-		HGI48_RS08515	0.17	-1.6
1,834,966	-		HGI48_RS08515	0.17	-1.2
1,834,966	-				+2.4
1,834,966	-		HGI48_RS08515	0.17	+2.9
1,834,966	-		HGI48_RS08515	0.17	-1.2
1,835,111	+		HGI48_RS08515	0.80	-0.4
1,835,212	+				-0.3
1,835,256	+		HGI48_RS08520	0.14	-2.2
1,835,256	+		HGI48_RS08520	0.14	-0.3
1,835,257	-		HGI48_RS08520	0.15	-2.2
1,835,257	-		HGI48_RS08520	0.15	-1.8
1,835,262	+		HGI48_RS08520	0.16	+0.9
1,835,262	+		HGI48_RS08520	0.16	-2.6
1,835,262	+				-0.8
1,835,267	+				+0.8
1,835,267	+		HGI48_RS08520	0.18	+1.7
1,835,267	+		HGI48_RS08520	0.18	-1.2
1,835,267	+		HGI48_RS08520	0.18	+1.1
1,835,267	+		HGI48_RS08520	0.18	-1.6
1,835,267	+		HGI48_RS08520	0.18	-2.4
1,835,267	+		HGI48_RS08520	0.18	+1.4
1,835,267	+		HGI48_RS08520	0.18	+1.3
1,835,267	+		HGI48_RS08520	0.18	-0.2
1,835,268	-		HGI48_RS08520	0.18	-2.0
1,835,268	-		HGI48_RS08520	0.18	+0.8
1,835,268	-		HGI48_RS08520	0.18	-1.8
1,835,268	-		HGI48_RS08520	0.18	+0.7
1,835,268	-		HGI48_RS08520	0.18	-1.8
1,835,268	-		HGI48_RS08520	0.18	+1.3
1,835,268	-		HGI48_RS08520	0.18	-3.5
1,835,268	-		HGI48_RS08520	0.18	+0.1
1,835,268	-				-0.2
1,835,271	+		HGI48_RS08520	0.19	+2.0
1,835,271	+		HGI48_RS08520	0.19	-3.0
1,835,271	+		HGI48_RS08520	0.19	-1.8
1,835,271	+		HGI48_RS08520	0.19	-1.2
1,835,271	+		HGI48_RS08520	0.19	-1.2
1,835,272	-		HGI48_RS08520	0.20	+1.3
1,835,272	-		HGI48_RS08520	0.20	+1.8
1,835,272	-		HGI48_RS08520	0.20	-2.4
1,835,272	-		HGI48_RS08520	0.20	-2.0
1,835,272	-		HGI48_RS08520	0.20	-1.6
1,835,272	-		HGI48_RS08520	0.20	+1.2
1,835,272	-		HGI48_RS08520	0.20	+1.1
1,835,299	+		HGI48_RS08520	0.28	+2.1
1,835,299	+		HGI48_RS08520	0.28	-1.5
1,835,299	+		HGI48_RS08520	0.28	+1.0
1,835,300	-		HGI48_RS08520	0.29	+1.8
1,835,300	-				+3.2
1,835,337	-		HGI48_RS08520	0.40	+1.1
1,835,359	-				-0.2
1,835,455	+		HGI48_RS08520	0.78	-1.6
1,835,467	+		HGI48_RS08520	0.82	+0.3
1,835,467	+		HGI48_RS08520	0.82	+0.9
1,835,468	-		HGI48_RS08520	0.82	-1.8
1,835,468	-		HGI48_RS08520	0.82	-2.2
1,835,468	-		HGI48_RS08520	0.82	+0.5
1,835,468	-		HGI48_RS08520	0.82	+0.4
1,835,490	-		HGI48_RS08520	0.89	-2.4
1,835,560	+		HGI48_RS08525	0.14	+0.3
1,835,560	+		HGI48_RS08525	0.14	-1.6
1,835,560	+		HGI48_RS08525	0.14	-4.8
1,835,611	-		HGI48_RS08525	0.32	-2.1
1,835,671	-		HGI48_RS08525	0.53	-1.8
1,835,792	+				+2.8
1,835,792	+				-1.2
1,835,792	+				-1.2
1,835,792	+				+0.4
1,835,792	+				-1.9
1,835,792	+				+0.2
1,835,792	+				-0.6
1,835,792	+				-1.6
1,835,792	+				+0.5
1,835,793	-				-2.1
1,835,793	-				+0.3
1,835,793	-				+1.0
1,835,805	-				+1.9
1,835,907	-				-1.6
1,835,907	-				+0.3
1,835,923	+				-2.9
1,835,923	+				+0.6
1,835,942	+				-0.8
1,835,949	+				-3.1
1,835,949	+				-1.8
1,835,949	+				-3.5
1,835,950	-				-1.6
1,835,950	-				-2.7
1,835,952	+				+1.0
1,835,956	+				-2.6
1,835,956	+				-0.0
1,835,956	+				-0.3
1,835,957	-				+2.1
1,835,957	-				-1.2
1,835,964	+				+0.9
1,835,964	+				+2.3
1,835,964	+				+1.9
1,835,964	+				-1.6
1,835,964	+				-2.1
1,835,965	-				+2.0
1,835,965	-				-2.2
1,835,965	-				-0.7
1,835,965	-				+1.9
1,835,965	-				+0.3
1,835,965	-				-0.2
1,835,968	+				+1.1
1,835,968	+				-1.6
1,835,968	+				-1.6
1,835,968	+				+2.6
1,835,968	+				+0.2
1,835,968	+				+0.8
1,835,968	+				-1.6
1,835,968	+				+1.7
1,835,968	+				-2.7
1,835,968	+				+0.5
1,835,968	+				+1.7
1,835,969	-				+0.3
1,835,969	-				+2.0
1,835,969	-				-0.8
1,835,969	-				-0.8
1,835,969	-				+1.3
1,835,969	-				-1.1
1,835,969	-				-1.2
1,835,971	+				+2.4
1,835,971	+				-1.8
1,835,971	+				+2.1
1,835,972	-				-0.9
1,835,972	-				-0.8
1,835,972	-				-2.1
1,836,012	+				-2.1
1,836,062	-				-1.2
1,836,084	-				+0.1
1,836,110	-				+1.0
1,836,119	+				-0.2
1,836,119	+				-3.2
1,836,120	-				+0.2
1,836,169	-				+0.0
1,836,178	+				-1.6
1,836,178	+				-1.6
1,836,192	+		HGI48_RS08530	0.13	+0.6
1,836,193	-		HGI48_RS08530	0.13	-1.8
1,836,211	+		HGI48_RS08530	0.19	+0.0
1,836,211	+				-0.2
1,836,212	-		HGI48_RS08530	0.20	-1.2
1,836,217	+				+2.3
1,836,217	+		HGI48_RS08530	0.21	+1.2
1,836,221	-		HGI48_RS08530	0.23	-1.8
1,836,301	+		HGI48_RS08530	0.50	+0.5
1,836,334	+				-0.2
1,836,335	-		HGI48_RS08530	0.62	-1.8
1,836,392	+		HGI48_RS08530	0.81	-1.8
1,836,440	+				-1.6
1,836,440	+				+0.5
1,836,440	+				-2.8
1,836,450	-				+2.4
1,836,506	-				+1.1
1,836,506	-				-1.0
1,836,527	+				-1.2
1,836,527	+				-3.5
1,836,528	-				-1.6
1,836,560	-				-3.2
1,836,590	-				-2.2
1,836,593	-				+0.3
1,836,593	-				-2.2
1,836,642	+				+4.1
1,836,642	+				-1.8
1,836,643	-				-1.2
1,836,745	+		HGI48_RS08535	0.10	-1.6
1,836,774	+		HGI48_RS08535	0.20	+0.8
1,836,775	-		HGI48_RS08535	0.20	+0.7