Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS08110

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS08105 and HGI48_RS08110 are separated by 2 nucleotidesHGI48_RS08110 and HGI48_RS08115 are separated by 84 nucleotidesHGI48_RS08115 and HGI48_RS08120 are separated by 3 nucleotides HGI48_RS08105: HGI48_RS08105 - ABC transporter permease subunit, at 1,742,722 to 1,743,654 _RS08105 HGI48_RS08110: HGI48_RS08110 - ABC transporter permease subunit, at 1,743,657 to 1,744,478 _RS08110 HGI48_RS08115: HGI48_RS08115 - ABC transporter ATP-binding protein, at 1,744,563 to 1,745,376 _RS08115 HGI48_RS08120: HGI48_RS08120 - ABC transporter ATP-binding protein, at 1,745,380 to 1,746,141 _RS08120 Position (kb) 1743 1744 1745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1742.702 kb on + strandat 1742.731 kb on + strandat 1742.731 kb on + strandat 1742.732 kb on - strandat 1742.873 kb on + strand, within HGI48_RS08105at 1742.873 kb on + strand, within HGI48_RS08105at 1742.873 kb on + strand, within HGI48_RS08105at 1742.873 kb on + strand, within HGI48_RS08105at 1742.874 kb on - strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.927 kb on + strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1742.928 kb on - strand, within HGI48_RS08105at 1743.028 kb on + strand, within HGI48_RS08105at 1743.029 kb on - strand, within HGI48_RS08105at 1743.029 kb on - strand, within HGI48_RS08105at 1743.105 kb on + strand, within HGI48_RS08105at 1743.106 kb on - strandat 1743.106 kb on - strand, within HGI48_RS08105at 1743.118 kb on - strand, within HGI48_RS08105at 1743.228 kb on + strand, within HGI48_RS08105at 1743.229 kb on - strand, within HGI48_RS08105at 1743.280 kb on + strand, within HGI48_RS08105at 1743.280 kb on + strand, within HGI48_RS08105at 1743.281 kb on - strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strandat 1743.292 kb on + strandat 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strandat 1743.292 kb on + strand, within HGI48_RS08105at 1743.292 kb on + strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strandat 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.293 kb on - strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.315 kb on + strand, within HGI48_RS08105at 1743.316 kb on - strand, within HGI48_RS08105at 1743.316 kb on - strand, within HGI48_RS08105at 1743.316 kb on - strand, within HGI48_RS08105at 1743.316 kb on - strandat 1743.340 kb on + strand, within HGI48_RS08105at 1743.341 kb on - strand, within HGI48_RS08105at 1743.341 kb on - strand, within HGI48_RS08105at 1743.341 kb on - strand, within HGI48_RS08105at 1743.350 kb on - strand, within HGI48_RS08105at 1743.350 kb on - strand, within HGI48_RS08105at 1743.559 kb on + strand, within HGI48_RS08105at 1743.559 kb on + strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.560 kb on - strand, within HGI48_RS08105at 1743.757 kb on - strand, within HGI48_RS08110at 1743.797 kb on + strand, within HGI48_RS08110at 1743.797 kb on + strand, within HGI48_RS08110at 1743.797 kb on + strand, within HGI48_RS08110at 1743.797 kb on + strandat 1743.797 kb on + strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.798 kb on - strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.801 kb on + strand, within HGI48_RS08110at 1743.802 kb on - strand, within HGI48_RS08110at 1743.802 kb on - strand, within HGI48_RS08110at 1743.802 kb on - strand, within HGI48_RS08110at 1743.897 kb on + strand, within HGI48_RS08110at 1743.898 kb on - strand, within HGI48_RS08110at 1743.898 kb on - strand, within HGI48_RS08110at 1743.898 kb on - strand, within HGI48_RS08110at 1743.899 kb on + strand, within HGI48_RS08110at 1743.899 kb on + strand, within HGI48_RS08110at 1743.961 kb on - strand, within HGI48_RS08110at 1743.989 kb on - strand, within HGI48_RS08110at 1744.077 kb on - strand, within HGI48_RS08110at 1744.161 kb on + strand, within HGI48_RS08110at 1744.162 kb on - strand, within HGI48_RS08110at 1744.170 kb on + strand, within HGI48_RS08110at 1744.170 kb on + strand, within HGI48_RS08110at 1744.170 kb on + strand, within HGI48_RS08110at 1744.200 kb on + strand, within HGI48_RS08110at 1744.200 kb on + strand, within HGI48_RS08110at 1744.200 kb on + strand, within HGI48_RS08110at 1744.201 kb on - strand, within HGI48_RS08110at 1744.201 kb on - strand, within HGI48_RS08110at 1744.277 kb on - strand, within HGI48_RS08110at 1744.279 kb on + strand, within HGI48_RS08110at 1744.280 kb on - strand, within HGI48_RS08110at 1744.280 kb on - strand, within HGI48_RS08110at 1744.280 kb on - strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.346 kb on + strand, within HGI48_RS08110at 1744.347 kb on - strandat 1744.347 kb on - strandat 1744.347 kb on - strand, within HGI48_RS08110at 1744.482 kb on + strandat 1744.500 kb on + strandat 1744.501 kb on - strandat 1744.671 kb on - strand, within HGI48_RS08115at 1744.878 kb on + strand, within HGI48_RS08115at 1744.878 kb on + strand, within HGI48_RS08115at 1744.879 kb on - strand, within HGI48_RS08115at 1744.881 kb on - strand, within HGI48_RS08115at 1744.881 kb on - strand, within HGI48_RS08115at 1744.920 kb on - strand, within HGI48_RS08115at 1744.999 kb on + strand, within HGI48_RS08115at 1745.000 kb on - strand, within HGI48_RS08115at 1745.011 kb on - strand, within HGI48_RS08115at 1745.011 kb on - strand, within HGI48_RS08115at 1745.123 kb on + strand, within HGI48_RS08115at 1745.124 kb on - strand, within HGI48_RS08115at 1745.131 kb on - strand, within HGI48_RS08115at 1745.230 kb on + strand, within HGI48_RS08115at 1745.230 kb on + strand, within HGI48_RS08115at 1745.230 kb on + strand, within HGI48_RS08115at 1745.230 kb on + strand, within HGI48_RS08115at 1745.231 kb on - strand, within HGI48_RS08115at 1745.309 kb on - strandat 1745.309 kb on - strandat 1745.311 kb on - strandat 1745.311 kb on - strandat 1745.343 kb on - strandat 1745.343 kb on - strandat 1745.343 kb on - strandat 1745.374 kb on + strandat 1745.374 kb on + strandat 1745.374 kb on + strandat 1745.375 kb on - strandat 1745.413 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,742,702 + -1.5
1,742,731 + -0.7
1,742,731 + +1.8
1,742,732 - +3.2
1,742,873 + HGI48_RS08105 0.16 +0.4
1,742,873 + HGI48_RS08105 0.16 -0.7
1,742,873 + HGI48_RS08105 0.16 -2.2
1,742,873 + HGI48_RS08105 0.16 -1.0
1,742,874 - HGI48_RS08105 0.16 -2.0
1,742,927 + HGI48_RS08105 0.22 +1.6
1,742,927 + HGI48_RS08105 0.22 -2.0
1,742,927 + HGI48_RS08105 0.22 +0.8
1,742,927 + HGI48_RS08105 0.22 -1.7
1,742,927 + HGI48_RS08105 0.22 -1.5
1,742,927 + HGI48_RS08105 0.22 +0.7
1,742,928 - HGI48_RS08105 0.22 +1.5
1,742,928 - HGI48_RS08105 0.22 -1.2
1,742,928 - HGI48_RS08105 0.22 +2.0
1,742,928 - HGI48_RS08105 0.22 -4.0
1,742,928 - HGI48_RS08105 0.22 -1.7
1,742,928 - HGI48_RS08105 0.22 -1.5
1,742,928 - HGI48_RS08105 0.22 -2.7
1,742,928 - HGI48_RS08105 0.22 -1.5
1,742,928 - HGI48_RS08105 0.22 -0.3
1,742,928 - HGI48_RS08105 0.22 -1.5
1,742,928 - HGI48_RS08105 0.22 -0.0
1,743,028 + HGI48_RS08105 0.33 +1.1
1,743,029 - HGI48_RS08105 0.33 -3.2
1,743,029 - HGI48_RS08105 0.33 +1.4
1,743,105 + HGI48_RS08105 0.41 +2.0
1,743,106 - -0.7
1,743,106 - HGI48_RS08105 0.41 -2.2
1,743,118 - HGI48_RS08105 0.42 -1.2
1,743,228 + HGI48_RS08105 0.54 -0.6
1,743,229 - HGI48_RS08105 0.54 -1.2
1,743,280 + HGI48_RS08105 0.60 +1.1
1,743,280 + HGI48_RS08105 0.60 +0.4
1,743,281 - HGI48_RS08105 0.60 +0.6
1,743,292 + HGI48_RS08105 0.61 -1.5
1,743,292 + HGI48_RS08105 0.61 -1.7
1,743,292 + HGI48_RS08105 0.61 +1.7
1,743,292 + +0.8
1,743,292 + +0.8
1,743,292 + HGI48_RS08105 0.61 -2.3
1,743,292 + HGI48_RS08105 0.61 +1.2
1,743,292 + HGI48_RS08105 0.61 +0.8
1,743,292 + HGI48_RS08105 0.61 +0.8
1,743,292 + HGI48_RS08105 0.61 -2.3
1,743,292 + HGI48_RS08105 0.61 -2.0
1,743,292 + +2.2
1,743,292 + HGI48_RS08105 0.61 -0.2
1,743,292 + HGI48_RS08105 0.61 +1.8
1,743,293 - HGI48_RS08105 0.61 -3.0
1,743,293 - HGI48_RS08105 0.61 +2.0
1,743,293 - -0.7
1,743,293 - HGI48_RS08105 0.61 +0.8
1,743,293 - HGI48_RS08105 0.61 +0.8
1,743,293 - HGI48_RS08105 0.61 -3.5
1,743,293 - HGI48_RS08105 0.61 -2.7
1,743,293 - HGI48_RS08105 0.61 +2.0
1,743,293 - HGI48_RS08105 0.61 -0.2
1,743,293 - HGI48_RS08105 0.61 -2.2
1,743,293 - HGI48_RS08105 0.61 +1.0
1,743,315 + HGI48_RS08105 0.64 +0.4
1,743,315 + HGI48_RS08105 0.64 +1.0
1,743,315 + HGI48_RS08105 0.64 +0.1
1,743,315 + HGI48_RS08105 0.64 +0.1
1,743,315 + HGI48_RS08105 0.64 +2.0
1,743,316 - HGI48_RS08105 0.64 -1.6
1,743,316 - HGI48_RS08105 0.64 -0.2
1,743,316 - HGI48_RS08105 0.64 +1.0
1,743,316 - -0.2
1,743,340 + HGI48_RS08105 0.66 +0.2
1,743,341 - HGI48_RS08105 0.66 +1.7
1,743,341 - HGI48_RS08105 0.66 +2.2
1,743,341 - HGI48_RS08105 0.66 +1.2
1,743,350 - HGI48_RS08105 0.67 -1.7
1,743,350 - HGI48_RS08105 0.67 -2.3
1,743,559 + HGI48_RS08105 0.90 -3.0
1,743,559 + HGI48_RS08105 0.90 +0.8
1,743,560 - HGI48_RS08105 0.90 +0.8
1,743,560 - HGI48_RS08105 0.90 +1.3
1,743,560 - HGI48_RS08105 0.90 -3.2
1,743,560 - HGI48_RS08105 0.90 -2.2
1,743,560 - HGI48_RS08105 0.90 -0.1
1,743,560 - HGI48_RS08105 0.90 +0.4
1,743,757 - HGI48_RS08110 0.12 -2.6
1,743,797 + HGI48_RS08110 0.17 +2.8
1,743,797 + HGI48_RS08110 0.17 -2.2
1,743,797 + HGI48_RS08110 0.17 -1.7
1,743,797 + -0.2
1,743,797 + HGI48_RS08110 0.17 -1.5
1,743,798 - HGI48_RS08110 0.17 -2.3
1,743,798 - HGI48_RS08110 0.17 -1.2
1,743,798 - HGI48_RS08110 0.17 +3.4
1,743,798 - HGI48_RS08110 0.17 +2.2
1,743,798 - HGI48_RS08110 0.17 +1.6
1,743,798 - HGI48_RS08110 0.17 -1.7
1,743,798 - HGI48_RS08110 0.17 +1.7
1,743,801 + HGI48_RS08110 0.18 -0.8
1,743,801 + HGI48_RS08110 0.18 -0.4
1,743,801 + HGI48_RS08110 0.18 +0.0
1,743,801 + HGI48_RS08110 0.18 -2.5
1,743,802 - HGI48_RS08110 0.18 -2.3
1,743,802 - HGI48_RS08110 0.18 +1.3
1,743,802 - HGI48_RS08110 0.18 -0.0
1,743,897 + HGI48_RS08110 0.29 +1.3
1,743,898 - HGI48_RS08110 0.29 -2.3
1,743,898 - HGI48_RS08110 0.29 -1.7
1,743,898 - HGI48_RS08110 0.29 -1.2
1,743,899 + HGI48_RS08110 0.29 +0.8
1,743,899 + HGI48_RS08110 0.29 -2.0
1,743,961 - HGI48_RS08110 0.37 -2.5
1,743,989 - HGI48_RS08110 0.40 +0.9
1,744,077 - HGI48_RS08110 0.51 -1.2
1,744,161 + HGI48_RS08110 0.61 -0.9
1,744,162 - HGI48_RS08110 0.61 -2.3
1,744,170 + HGI48_RS08110 0.62 +0.7
1,744,170 + HGI48_RS08110 0.62 +1.2
1,744,170 + HGI48_RS08110 0.62 -1.7
1,744,200 + HGI48_RS08110 0.66 -2.0
1,744,200 + HGI48_RS08110 0.66 -1.5
1,744,200 + HGI48_RS08110 0.66 +3.4
1,744,201 - HGI48_RS08110 0.66 -0.3
1,744,201 - HGI48_RS08110 0.66 -1.7
1,744,277 - HGI48_RS08110 0.75 +1.6
1,744,279 + HGI48_RS08110 0.76 -2.2
1,744,280 - HGI48_RS08110 0.76 -3.0
1,744,280 - HGI48_RS08110 0.76 +0.9
1,744,280 - HGI48_RS08110 0.76 -1.7
1,744,346 + HGI48_RS08110 0.84 -1.4
1,744,346 + HGI48_RS08110 0.84 +2.4
1,744,346 + HGI48_RS08110 0.84 +0.5
1,744,346 + HGI48_RS08110 0.84 +2.0
1,744,346 + HGI48_RS08110 0.84 +0.2
1,744,346 + HGI48_RS08110 0.84 -1.5
1,744,347 - -0.7
1,744,347 - -0.2
1,744,347 - HGI48_RS08110 0.84 -3.1
1,744,482 + +1.5
1,744,500 + +2.3
1,744,501 - -0.2
1,744,671 - HGI48_RS08115 0.13 +1.4
1,744,878 + HGI48_RS08115 0.39 -2.6
1,744,878 + HGI48_RS08115 0.39 -1.5
1,744,879 - HGI48_RS08115 0.39 +1.3
1,744,881 - HGI48_RS08115 0.39 +0.5
1,744,881 - HGI48_RS08115 0.39 -1.5
1,744,920 - HGI48_RS08115 0.44 -1.7
1,744,999 + HGI48_RS08115 0.54 -2.0
1,745,000 - HGI48_RS08115 0.54 +2.7
1,745,011 - HGI48_RS08115 0.55 +0.4
1,745,011 - HGI48_RS08115 0.55 -0.5
1,745,123 + HGI48_RS08115 0.69 +3.4
1,745,124 - HGI48_RS08115 0.69 -2.5
1,745,131 - HGI48_RS08115 0.70 +1.0
1,745,230 + HGI48_RS08115 0.82 +1.1
1,745,230 + HGI48_RS08115 0.82 -0.4
1,745,230 + HGI48_RS08115 0.82 -0.1
1,745,230 + HGI48_RS08115 0.82 +0.8
1,745,231 - HGI48_RS08115 0.82 +1.6
1,745,309 - +3.0
1,745,309 - -1.2
1,745,311 - -1.0
1,745,311 - -2.2
1,745,343 - -2.5
1,745,343 - -1.2
1,745,343 - -0.7
1,745,374 + +1.9
1,745,374 + -1.7
1,745,374 + -2.0
1,745,375 - +0.2
1,745,413 + -0.2

Or see this region's nucleotide sequence