Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07935

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,697,821	+				-0.2
1,697,821	+		HGI48_RS07930	0.38	+1.2
1,697,821	+		HGI48_RS07930	0.38	-1.2
1,697,821	+		HGI48_RS07930	0.38	+0.7
1,697,821	+		HGI48_RS07930	0.38	+2.4
1,697,821	+		HGI48_RS07930	0.38	+0.6
1,697,821	+		HGI48_RS07930	0.38	+0.8
1,697,822	-		HGI48_RS07930	0.38	+1.5
1,697,822	-		HGI48_RS07930	0.38	+0.2
1,697,822	-		HGI48_RS07930	0.38	-2.3
1,697,822	-		HGI48_RS07930	0.38	-1.8
1,697,822	-		HGI48_RS07930	0.38	-1.8
1,697,914	+		HGI48_RS07930	0.44	+1.7
1,697,914	+		HGI48_RS07930	0.44	+0.6
1,697,915	-		HGI48_RS07930	0.44	+1.2
1,697,915	-		HGI48_RS07930	0.44	-0.5
1,697,946	-		HGI48_RS07930	0.46	-1.2
1,697,946	-		HGI48_RS07930	0.46	-0.1
1,698,013	-		HGI48_RS07930	0.51	-2.0
1,698,199	-		HGI48_RS07930	0.63	+0.9
1,698,220	+		HGI48_RS07930	0.65	-0.6
1,698,220	+				-0.8
1,698,220	+		HGI48_RS07930	0.65	-1.2
1,698,220	+		HGI48_RS07930	0.65	-1.8
1,698,221	-		HGI48_RS07930	0.65	+2.8
1,698,223	+		HGI48_RS07930	0.65	+0.9
1,698,223	+		HGI48_RS07930	0.65	-0.3
1,698,224	-		HGI48_RS07930	0.65	+0.4
1,698,224	-		HGI48_RS07930	0.65	-2.5
1,698,229	-		HGI48_RS07930	0.65	-2.5
1,698,229	-		HGI48_RS07930	0.65	+1.4
1,698,288	+		HGI48_RS07930	0.69	+4.2
1,698,410	-		HGI48_RS07930	0.77	-1.8
1,698,411	+		HGI48_RS07930	0.77	-0.8
1,698,411	+		HGI48_RS07930	0.77	+1.9
1,698,411	+		HGI48_RS07930	0.77	+0.9
1,698,412	-		HGI48_RS07930	0.78	+0.1
1,698,412	-				+2.4
1,698,547	+		HGI48_RS07930	0.87	+0.1
1,698,547	+				+1.8
1,698,564	+		HGI48_RS07930	0.88	-2.3
1,698,572	+		HGI48_RS07930	0.88	-0.8
1,698,573	-		HGI48_RS07930	0.88	+1.1
1,698,578	+		HGI48_RS07930	0.89	-0.7
1,698,579	-		HGI48_RS07930	0.89	+0.4
1,698,579	-		HGI48_RS07930	0.89	+1.7
1,698,579	-		HGI48_RS07930	0.89	-2.8
1,698,579	-		HGI48_RS07930	0.89	-1.1
1,698,597	+				-2.8
1,698,597	+				-1.8
1,698,597	+				+3.0
1,698,755	+				-0.5
1,698,756	-				+3.5
1,698,942	+		HGI48_RS07935	0.12	-2.0
1,698,942	+		HGI48_RS07935	0.12	+1.6
1,698,942	+		HGI48_RS07935	0.12	-2.0
1,698,943	-		HGI48_RS07935	0.12	-0.2
1,698,970	+		HGI48_RS07935	0.14	+0.4
1,698,970	+		HGI48_RS07935	0.14	-3.9
1,698,970	+		HGI48_RS07935	0.14	+1.8
1,698,971	-		HGI48_RS07935	0.14	+1.0
1,698,971	-				-0.8
1,698,974	-		HGI48_RS07935	0.14	+1.8
1,698,991	+		HGI48_RS07935	0.15	-2.0
1,698,992	-		HGI48_RS07935	0.15	+0.2
1,699,049	-		HGI48_RS07935	0.19	+2.1
1,699,122	-				+3.4
1,699,122	-		HGI48_RS07935	0.24	+2.2
1,699,124	+		HGI48_RS07935	0.25	-2.5
1,699,124	+		HGI48_RS07935	0.25	+2.1
1,699,125	-		HGI48_RS07935	0.25	+1.1
1,699,125	-				-0.2
1,699,185	+		HGI48_RS07935	0.29	+0.8
1,699,186	-		HGI48_RS07935	0.29	+0.5
1,699,193	-		HGI48_RS07935	0.30	+1.5
1,699,193	-		HGI48_RS07935	0.30	-1.2
1,699,253	-		HGI48_RS07935	0.34	-1.2
1,699,435	+		HGI48_RS07935	0.47	-1.2
1,699,436	-		HGI48_RS07935	0.47	+0.2
1,699,443	+		HGI48_RS07935	0.47	-2.0
1,699,443	+		HGI48_RS07935	0.47	+1.2
1,699,444	-		HGI48_RS07935	0.47	-1.2
1,699,444	-		HGI48_RS07935	0.47	-2.9
1,699,446	+		HGI48_RS07935	0.47	-1.8
1,699,447	-		HGI48_RS07935	0.48	+1.9
1,699,447	-		HGI48_RS07935	0.48	-2.5
1,699,462	+		HGI48_RS07935	0.49	+1.7
1,699,463	-		HGI48_RS07935	0.49	+3.0
1,699,463	-		HGI48_RS07935	0.49	-2.3
1,699,463	-		HGI48_RS07935	0.49	-3.0
1,699,463	-		HGI48_RS07935	0.49	+0.4
1,699,478	+		HGI48_RS07935	0.50	-1.1
1,699,479	-		HGI48_RS07935	0.50	-1.5
1,699,535	-				+3.2
1,699,606	+		HGI48_RS07935	0.59	-1.5
1,699,677	+		HGI48_RS07935	0.64	-2.0
1,699,678	-		HGI48_RS07935	0.64	+0.7
1,699,678	-		HGI48_RS07935	0.64	-2.8
1,699,718	+		HGI48_RS07935	0.67	+1.8
1,699,772	+		HGI48_RS07935	0.71	-1.5
1,699,773	-		HGI48_RS07935	0.71	+1.1
1,699,773	-		HGI48_RS07935	0.71	-1.8
1,699,773	-		HGI48_RS07935	0.71	+1.4
1,699,773	-		HGI48_RS07935	0.71	-1.5
1,699,817	-		HGI48_RS07935	0.74	+1.9
1,699,915	+		HGI48_RS07935	0.81	-1.5
1,699,915	+		HGI48_RS07935	0.81	-2.0
1,699,926	+		HGI48_RS07935	0.81	+1.9
1,699,927	-		HGI48_RS07935	0.82	+1.0
1,699,957	-		HGI48_RS07935	0.84	-0.0
1,699,957	-		HGI48_RS07935	0.84	-1.5
1,699,957	-		HGI48_RS07935	0.84	-2.2
1,699,957	-		HGI48_RS07935	0.84	-1.2
1,700,011	+		HGI48_RS07935	0.88	-1.8
1,700,011	+		HGI48_RS07935	0.88	-0.3
1,700,012	-		HGI48_RS07935	0.88	-1.8
1,700,012	-		HGI48_RS07935	0.88	-2.2
1,700,058	+				+0.4
1,700,058	+				+0.3
1,700,072	-				+2.0
1,700,089	+				-2.3
1,700,089	+				+0.2
1,700,089	+				-2.3
1,700,089	+				-4.0
1,700,089	+				-2.3
1,700,090	-				+0.1
1,700,108	+				-2.0
1,700,109	-				-1.2
1,700,109	-				-2.9
1,700,109	-				-2.3
1,700,112	+				+0.8
1,700,112	+				+2.0
1,700,112	+				+2.4
1,700,143	+				-1.8
1,700,209	+				-1.8
1,700,210	-				+2.0
1,700,222	+				-0.8
1,700,222	+				+0.5
1,700,223	-				-1.5
1,700,241	+				-0.8
1,700,242	-				+0.4
1,700,336	+				-0.2
1,700,336	+				-2.2
1,700,336	+				+0.8
1,700,337	-				+1.0
1,700,341	-				+2.0
1,700,385	+				-1.8
1,700,385	+				-1.5
1,700,385	+				-2.0
1,700,388	+				-1.2
1,700,388	+				-3.3
1,700,388	+				-3.7
1,700,389	-				-1.5
1,700,389	-				-1.5
1,700,422	+				-2.5
1,700,422	+				-0.8
1,700,423	-				-1.2
1,700,435	+				-1.5
1,700,455	+				-2.0
1,700,455	+				+1.5
1,700,455	+				-1.8
1,700,455	+				-1.5
1,700,704	+				-0.2
1,700,704	+		HGI48_RS07940	0.14	+0.7
1,700,792	+		HGI48_RS07940	0.22	+2.0
1,700,792	+		HGI48_RS07940	0.22	-1.8
1,700,793	-		HGI48_RS07940	0.22	+0.6
1,700,793	-		HGI48_RS07940	0.22	-2.2
1,700,793	-		HGI48_RS07940	0.22	-2.0
1,700,793	-		HGI48_RS07940	0.22	-2.1
1,700,796	+		HGI48_RS07940	0.22	-1.2
1,700,796	+				+2.2
1,700,796	+				+1.6
1,700,796	+				+3.4
1,700,797	-		HGI48_RS07940	0.22	-2.3
1,700,797	-		HGI48_RS07940	0.22	+0.8
1,700,798	+		HGI48_RS07940	0.22	+1.7
1,700,798	+		HGI48_RS07940	0.22	+1.0
1,700,798	+		HGI48_RS07940	0.22	-1.2
1,700,798	+		HGI48_RS07940	0.22	-2.0
1,700,799	-		HGI48_RS07940	0.22	-1.0
1,700,799	-		HGI48_RS07940	0.22	+2.9
1,701,003	+		HGI48_RS07940	0.40	-1.8
1,701,003	+		HGI48_RS07940	0.40	-2.8
1,701,003	+		HGI48_RS07940	0.40	-2.0
1,701,003	+		HGI48_RS07940	0.40	-1.5
1,701,003	+		HGI48_RS07940	0.40	+1.2
1,701,003	+		HGI48_RS07940	0.40	-1.2
1,701,003	+		HGI48_RS07940	0.40	+1.1
1,701,003	+		HGI48_RS07940	0.40	-1.5
1,701,003	+				-0.8
1,701,003	+		HGI48_RS07940	0.40	+1.4
1,701,003	+				+2.6
1,701,003	+		HGI48_RS07940	0.40	+0.2
1,701,003	+		HGI48_RS07940	0.40	-1.8
1,701,003	+		HGI48_RS07940	0.40	+2.0
1,701,003	+		HGI48_RS07940	0.40	+2.1
1,701,004	-		HGI48_RS07940	0.40	+0.8
1,701,004	-		HGI48_RS07940	0.40	-1.5
1,701,004	-		HGI48_RS07940	0.40	+1.2
1,701,004	-		HGI48_RS07940	0.40	+2.5
1,701,004	-		HGI48_RS07940	0.40	-1.2
1,701,004	-		HGI48_RS07940	0.40	-1.8
1,701,004	-		HGI48_RS07940	0.40	-1.2
1,701,004	-		HGI48_RS07940	0.40	+0.4
1,701,004	-		HGI48_RS07940	0.40	-1.5
1,701,004	-		HGI48_RS07940	0.40	+0.6
1,701,004	-		HGI48_RS07940	0.40	-0.5
1,701,004	-		HGI48_RS07940	0.40	-2.2
1,701,014	+		HGI48_RS07940	0.41	+1.5
1,701,015	-				+1.2
1,701,105	-				-0.2
1,701,185	+				-0.8
1,701,186	-				-0.2
1,701,186	-				-0.8