Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS07610

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,620,315	+		HGI48_RS07595	0.37	+0.1
1,620,315	+		HGI48_RS07595	0.37	-0.3
1,620,315	+		HGI48_RS07595	0.37	+0.2
1,620,315	+		HGI48_RS07595	0.37	+1.8
1,620,315	+				-0.7
1,620,316	-		HGI48_RS07595	0.37	-2.3
1,620,316	-		HGI48_RS07595	0.37	-1.2
1,620,316	-		HGI48_RS07595	0.37	+1.7
1,620,362	-		HGI48_RS07595	0.50	-0.2
1,620,377	-		HGI48_RS07595	0.54	-0.2
1,620,377	-		HGI48_RS07595	0.54	-1.3
1,620,380	-		HGI48_RS07595	0.54	-0.2
1,620,429	+		HGI48_RS07595	0.68	-2.0
1,620,452	-		HGI48_RS07595	0.74	+0.6
1,620,477	+		HGI48_RS07595	0.81	+0.7
1,620,485	+		HGI48_RS07595	0.83	+2.5
1,620,529	+				-2.0
1,620,529	+				-1.5
1,620,532	-				+1.0
1,620,584	+				-0.2
1,620,584	+				-3.1
1,620,584	+				-1.7
1,620,584	+				+1.0
1,620,584	+				-1.2
1,620,584	+				-1.5
1,620,585	-				+3.0
1,620,585	-				-2.0
1,620,585	-				+1.0
1,620,585	-				-0.7
1,620,585	-				-2.6
1,620,585	-				-1.5
1,620,625	+				-1.0
1,620,625	+				-1.5
1,620,625	+				-3.3
1,620,626	-				-1.2
1,620,683	+		HGI48_RS07600	0.24	-1.7
1,620,684	-		HGI48_RS07600	0.24	-1.3
1,620,684	-		HGI48_RS07600	0.24	+1.4
1,620,732	-		HGI48_RS07600	0.43	-0.7
1,620,732	-		HGI48_RS07600	0.43	-1.7
1,620,877	-				+0.6
1,620,877	-				-1.5
1,620,908	-				+0.8
1,620,921	-				-2.2
1,620,971	+				+0.2
1,620,994	-				-0.2
1,621,037	+				-2.0
1,621,037	+				+0.8
1,621,037	+				+1.0
1,621,037	+				+3.6
1,621,037	+				+0.5
1,621,037	+				-0.7
1,621,037	+				-1.2
1,621,037	+				+1.3
1,621,037	+				+1.2
1,621,037	+				-0.5
1,621,038	-				-0.0
1,621,038	-				-1.5
1,621,038	-				+0.4
1,621,038	-				-2.5
1,621,038	-				-0.7
1,621,038	-				-1.2
1,621,038	-				-1.2
1,621,038	-				+0.3
1,621,038	-				-1.2
1,621,039	+				+1.1
1,621,039	+				+0.9
1,621,039	+				-0.2
1,621,039	+				+0.8
1,621,039	+				+0.6
1,621,039	+				+1.1
1,621,039	+				+2.3
1,621,039	+				-0.7
1,621,039	+				+1.0
1,621,039	+				-2.2
1,621,039	+				-1.2
1,621,040	-				-2.5
1,621,040	-				-1.7
1,621,040	-				-1.7
1,621,040	-				-1.2
1,621,040	-				+1.7
1,621,040	-				-1.2
1,621,040	-				+0.7
1,621,040	-				+1.8
1,621,040	-				-1.7
1,621,040	-				-0.1
1,621,040	-				-1.4
1,621,040	-				-1.2
1,621,040	-				-1.5
1,621,040	-				-0.2
1,621,040	-				-1.5
1,621,105	+		HGI48_RS07605	0.36	-2.2
1,621,105	+		HGI48_RS07605	0.36	+0.7
1,621,105	+		HGI48_RS07605	0.36	+1.3
1,621,105	+		HGI48_RS07605	0.36	+1.2
1,621,105	+		HGI48_RS07605	0.36	+0.7
1,621,105	+		HGI48_RS07605	0.36	-1.5
1,621,106	-		HGI48_RS07605	0.36	+0.7
1,621,106	-				-0.7
1,621,106	-		HGI48_RS07605	0.36	+1.1
1,621,106	-		HGI48_RS07605	0.36	-2.0
1,621,106	-		HGI48_RS07605	0.36	+1.1
1,621,106	-		HGI48_RS07605	0.36	+0.8
1,621,163	+				-0.2
1,621,163	+		HGI48_RS07605	0.68	+1.0
1,621,164	-		HGI48_RS07605	0.68	-1.7
1,621,164	-		HGI48_RS07605	0.68	+1.0
1,621,164	-				-0.7
1,621,164	-				-0.7
1,621,164	-		HGI48_RS07605	0.68	-1.7
1,621,303	+				-1.2
1,621,304	-				+2.0
1,621,304	-				-2.0
1,621,304	-				-2.0
1,621,304	-				-0.3
1,621,344	-				-1.2
1,621,360	+				-0.7
1,621,360	+				+0.3
1,621,361	-				+0.1
1,621,429	-		HGI48_RS07610	0.12	+0.8
1,621,438	-		HGI48_RS07610	0.13	+0.0
1,621,438	-		HGI48_RS07610	0.13	-0.6
1,621,438	-				+4.0
1,621,529	+		HGI48_RS07610	0.21	+0.5
1,621,529	+		HGI48_RS07610	0.21	-0.6
1,621,530	-		HGI48_RS07610	0.22	-2.3
1,621,609	+		HGI48_RS07610	0.29	-3.0
1,621,609	+		HGI48_RS07610	0.29	-1.2
1,621,609	+		HGI48_RS07610	0.29	+1.0
1,621,609	+		HGI48_RS07610	0.29	-1.5
1,621,609	+		HGI48_RS07610	0.29	-0.6
1,621,610	-		HGI48_RS07610	0.29	-2.2
1,621,610	-		HGI48_RS07610	0.29	+1.3
1,621,610	-		HGI48_RS07610	0.29	-1.7
1,621,610	-		HGI48_RS07610	0.29	+1.9
1,621,610	-		HGI48_RS07610	0.29	-1.7
1,621,610	-		HGI48_RS07610	0.29	+1.3
1,621,610	-		HGI48_RS07610	0.29	+0.3
1,621,610	-		HGI48_RS07610	0.29	-2.0
1,621,824	-		HGI48_RS07610	0.49	-2.3
1,621,824	-		HGI48_RS07610	0.49	+1.8
1,621,834	+		HGI48_RS07610	0.50	+1.1
1,621,966	+		HGI48_RS07610	0.63	+1.8
1,621,966	+		HGI48_RS07610	0.63	+2.2
1,621,988	+		HGI48_RS07610	0.65	-2.3
1,621,988	+		HGI48_RS07610	0.65	+1.3
1,621,989	-		HGI48_RS07610	0.65	-3.3
1,621,989	-		HGI48_RS07610	0.65	+0.6
1,622,049	-		HGI48_RS07610	0.71	-1.5
1,622,049	-		HGI48_RS07610	0.71	-2.3
1,622,049	-		HGI48_RS07610	0.71	-1.2
1,622,089	-		HGI48_RS07610	0.75	+0.0
1,622,145	-		HGI48_RS07610	0.80	+2.1
1,622,151	-		HGI48_RS07610	0.80	-3.3
1,622,332	+				+0.8
1,622,332	+				-1.7
1,622,333	-				-2.7
1,622,333	-				+2.1
1,622,397	+				+1.4
1,622,397	+				-1.7
1,622,397	+				-2.0
1,622,397	+				+2.1
1,622,398	-				+1.0
1,622,399	+				+1.7
1,622,399	+				-3.0
1,622,399	+				+0.4
1,622,399	+				-0.9
1,622,399	+				-2.2
1,622,399	+				-2.5
1,622,399	+				+2.1
1,622,399	+				+1.1
1,622,400	-				-2.6
1,622,400	-				+0.7
1,622,400	-				-0.4
1,622,407	+				+0.6
1,622,584	+				+0.8
1,622,584	+				-3.2
1,622,584	+				+5.2
1,622,599	+				-2.5
1,622,599	+				+0.8
1,622,600	-				-0.6
1,622,606	+				-1.2
1,622,609	+				-0.6
1,622,660	+				-2.6
1,622,661	-				-2.6
1,622,677	-				-1.7
1,622,692	+				+0.8
1,622,714	-				+1.4
1,622,714	-				-1.5
1,622,740	+				-1.5
1,622,741	-				-1.0
1,622,789	+				-1.2
1,622,789	+				+0.8
1,622,790	-				-0.1
1,622,790	-				+0.4
1,622,790	-				-2.2
1,622,790	-				-1.4
1,622,816	+				-3.3
1,622,816	+				-1.2
1,622,816	+				-0.2
1,622,862	+				+1.0
1,622,947	+				-2.0
1,622,947	+				+3.0
1,622,989	+				-0.9
1,622,989	+				-1.7
1,622,989	+				-2.0
1,622,989	+				-1.2
1,622,989	+				-0.7
1,622,990	-				-1.7
1,622,990	-				-2.0
1,622,990	-				+0.3
1,623,019	+				-2.2
1,623,019	+				-2.0
1,623,020	-				+0.3
1,623,020	-				+1.1
1,623,020	-				+0.9
1,623,136	+				+1.2
1,623,136	+				-1.5
1,623,136	+				+0.2
1,623,136	+				-2.6
1,623,136	+				+1.1
1,623,137	-				+1.2
1,623,137	-				+2.7
1,623,137	-				+0.4
1,623,137	-				+0.6
1,623,137	-				-2.5
1,623,138	+				-2.6
1,623,139	-				-0.8
1,623,139	-				-1.8
1,623,192	+		HGI48_RS07615	0.12	+1.7
1,623,346	-		HGI48_RS07615	0.17	-2.2