Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS06505

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHGI48_RS06500 and HGI48_RS06505 are separated by 17 nucleotidesHGI48_RS06505 and HGI48_RS06510 are separated by 137 nucleotides HGI48_RS06500: HGI48_RS06500 - 2-oxoglutarate dehydrogenase E1 component, at 1,377,968 to 1,380,775 _RS06500 HGI48_RS06505: HGI48_RS06505 - 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase, at 1,380,793 to 1,382,019 _RS06505 HGI48_RS06510: HGI48_RS06510 - ADP-forming succinate--CoA ligase subunit beta, at 1,382,157 to 1,383,323 _RS06510 Position (kb) 1380 1381 1382 1383Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1380.773 kb on + strandat 1380.773 kb on + strandat 1380.787 kb on + strandat 1382.064 kb on + strandat 1382.064 kb on + strandat 1382.064 kb on + strandat 1382.065 kb on - strandat 1382.071 kb on + strandat 1382.071 kb on + strandat 1382.071 kb on + strandat 1382.071 kb on + strandat 1382.128 kb on + strandat 1382.140 kb on + strandat 1382.231 kb on + strandat 1382.232 kb on - strandat 1382.406 kb on + strand, within HGI48_RS06510at 1382.471 kb on + strand, within HGI48_RS06510at 1382.471 kb on + strand, within HGI48_RS06510at 1382.910 kb on + strand, within HGI48_RS06510at 1382.910 kb on + strand, within HGI48_RS06510at 1382.911 kb on - strand, within HGI48_RS06510

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,380,773 + +0.0
1,380,773 + -1.4
1,380,787 + -2.7
1,382,064 + -0.6
1,382,064 + -1.0
1,382,064 + +3.0
1,382,065 - -3.1
1,382,071 + -0.7
1,382,071 + -0.3
1,382,071 + +1.4
1,382,071 + +1.5
1,382,128 + +0.2
1,382,140 + +2.0
1,382,231 + -0.0
1,382,232 - -0.6
1,382,406 + HGI48_RS06510 0.21 -1.9
1,382,471 + HGI48_RS06510 0.27 +0.8
1,382,471 + HGI48_RS06510 0.27 -1.6
1,382,910 + HGI48_RS06510 0.65 +1.0
1,382,910 + HGI48_RS06510 0.65 -0.8
1,382,911 - HGI48_RS06510 0.65 -1.6

Or see this region's nucleotide sequence