Strain Fitness in Dickeya dianthicola 67-19 around HGI48_RS05730

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,207,476	+		HGI48_RS05720	0.75	-1.0
1,207,476	+		HGI48_RS05720	0.75	+0.4
1,207,633	-		HGI48_RS05720	0.90	-1.6
1,207,633	-		HGI48_RS05720	0.90	-3.1
1,207,633	-		HGI48_RS05720	0.90	-2.0
1,207,762	-				+1.4
1,207,768	+				-1.0
1,207,768	+				-3.1
1,207,768	+				-2.4
1,207,768	+				-1.4
1,207,768	+				-2.0
1,207,768	+				-0.6
1,207,769	-				-1.4
1,207,769	-				-2.0
1,207,769	-				+0.3
1,207,769	-				-0.2
1,207,769	-				-3.2
1,207,769	-				-0.7
1,207,769	-				-1.4
1,207,876	+				+2.2
1,207,911	-				-1.8
1,207,913	-				+0.5
1,207,919	-				+1.8
1,207,939	+				-1.8
1,207,940	-				-2.4
1,207,940	-				-2.0
1,207,957	-				+0.3
1,207,970	-		HGI48_RS05725	0.11	+2.8
1,208,057	+		HGI48_RS05725	0.30	+0.5
1,208,057	+		HGI48_RS05725	0.30	+1.7
1,208,057	+		HGI48_RS05725	0.30	-2.6
1,208,057	+		HGI48_RS05725	0.30	-2.0
1,208,057	+		HGI48_RS05725	0.30	-2.4
1,208,058	-		HGI48_RS05725	0.30	-1.0
1,208,186	-		HGI48_RS05725	0.58	-0.5
1,208,231	+		HGI48_RS05725	0.68	-1.0
1,208,232	-		HGI48_RS05725	0.68	-2.4
1,208,235	+		HGI48_RS05725	0.68	-1.6
1,208,235	+		HGI48_RS05725	0.68	-0.0
1,208,236	-		HGI48_RS05725	0.69	-1.4
1,208,268	-		HGI48_RS05725	0.76	-1.1
1,208,268	-		HGI48_RS05725	0.76	+1.1
1,208,279	+				-0.0
1,208,320	+		HGI48_RS05725	0.87	-2.2
1,208,320	+		HGI48_RS05725	0.87	+1.9
1,208,320	+		HGI48_RS05725	0.87	+2.7
1,208,320	+		HGI48_RS05725	0.87	+0.3
1,208,321	-		HGI48_RS05725	0.87	+0.6
1,208,321	-		HGI48_RS05725	0.87	-1.0
1,208,321	-		HGI48_RS05725	0.87	-1.4
1,208,321	-		HGI48_RS05725	0.87	-0.2
1,208,336	-				+0.8
1,208,376	+				+0.2
1,208,376	+				-2.9
1,208,378	+				+4.4
1,208,386	-				+0.6
1,208,395	-				+1.7
1,208,395	-				+2.7
1,208,395	-				-0.0
1,208,395	-				-1.6
1,208,395	-				+1.1
1,208,395	-				+3.7
1,208,401	+				-0.5
1,208,402	-				-1.8
1,208,402	-				+1.2
1,208,402	-				-1.8
1,208,402	-				-0.6
1,208,402	-				-2.5
1,208,402	-				-2.0
1,208,405	+				-1.4
1,208,405	+				-2.0
1,208,405	+				+1.3
1,208,408	-				+0.1
1,208,410	+				+2.2
1,208,411	-				-0.0
1,208,411	-				+2.3
1,208,420	-				-2.2
1,208,429	+				+0.7
1,208,477	+				+1.7
1,208,478	-				-2.5
1,208,485	+				+1.9
1,208,620	-				-0.2
1,208,660	+		HGI48_RS05730	0.11	+3.1
1,208,668	+		HGI48_RS05730	0.12	-2.5
1,208,668	+		HGI48_RS05730	0.12	-1.8
1,208,669	-		HGI48_RS05730	0.12	+1.5
1,208,669	-		HGI48_RS05730	0.12	+1.4
1,208,714	-		HGI48_RS05730	0.14	+0.6
1,208,747	-		HGI48_RS05730	0.16	+2.1
1,208,840	+		HGI48_RS05730	0.22	-1.4
1,208,841	-		HGI48_RS05730	0.22	-2.4
1,208,916	+		HGI48_RS05730	0.26	-1.6
1,208,925	+		HGI48_RS05730	0.26	-1.0
1,208,925	+		HGI48_RS05730	0.26	-2.6
1,208,925	+		HGI48_RS05730	0.26	+0.3
1,208,925	+		HGI48_RS05730	0.26	-2.9
1,208,926	-		HGI48_RS05730	0.26	+0.6
1,208,994	+		HGI48_RS05730	0.30	-1.0
1,209,081	+		HGI48_RS05730	0.35	+2.0
1,209,202	+		HGI48_RS05730	0.42	-1.4
1,209,202	+		HGI48_RS05730	0.42	-1.6
1,209,202	+		HGI48_RS05730	0.42	-1.6
1,209,203	-				-0.6
1,209,203	-				-0.0
1,209,257	+		HGI48_RS05730	0.45	-1.8
1,209,257	+		HGI48_RS05730	0.45	-2.6
1,209,257	+		HGI48_RS05730	0.45	+0.2
1,209,257	+		HGI48_RS05730	0.45	-0.3
1,209,270	+				-0.6
1,209,305	-		HGI48_RS05730	0.48	-3.1
1,209,305	-		HGI48_RS05730	0.48	+0.8
1,209,351	+		HGI48_RS05730	0.51	+1.5
1,209,351	+		HGI48_RS05730	0.51	+0.7
1,209,352	-		HGI48_RS05730	0.51	-1.4
1,209,352	-		HGI48_RS05730	0.51	-2.2
1,209,379	+		HGI48_RS05730	0.52	-2.8
1,209,381	+		HGI48_RS05730	0.52	+0.1
1,209,657	-		HGI48_RS05730	0.68	+1.6
1,209,698	+		HGI48_RS05730	0.70	-2.0
1,209,745	-		HGI48_RS05730	0.73	-0.0
1,209,745	-				+2.0
1,209,819	+				-0.0
1,209,819	+		HGI48_RS05730	0.77	-2.0
1,210,156	-				+3.0
1,210,156	-				+0.6
1,210,156	-				-1.4
1,210,159	+				-1.4
1,210,159	+				-1.4
1,210,159	+				+1.9
1,210,159	+				-2.2
1,210,159	+				+1.1
1,210,159	+				+0.3
1,210,160	-				-0.0
1,210,160	-				+0.7
1,210,166	-				-1.4
1,210,187	+				+0.3
1,210,265	+				+1.9
1,210,359	-				-1.4
1,210,427	+		HGI48_RS05735	0.12	-1.0
1,210,428	-		HGI48_RS05735	0.12	-1.4
1,210,463	+		HGI48_RS05735	0.14	+0.7
1,210,463	+		HGI48_RS05735	0.14	-1.8
1,210,515	+		HGI48_RS05735	0.17	+1.0
1,210,515	+		HGI48_RS05735	0.17	-2.1
1,210,516	-		HGI48_RS05735	0.17	-1.0
1,210,516	-		HGI48_RS05735	0.17	-1.0
1,210,516	-		HGI48_RS05735	0.17	+1.7
1,210,519	+				-0.6
1,210,519	+				-0.6
1,210,520	-		HGI48_RS05735	0.17	+0.4
1,210,520	-		HGI48_RS05735	0.17	-1.4
1,210,520	-		HGI48_RS05735	0.17	-2.4
1,210,520	-		HGI48_RS05735	0.17	+1.0
1,210,631	+		HGI48_RS05735	0.23	-2.7
1,210,631	+		HGI48_RS05735	0.23	+0.5
1,210,632	-				-0.0
1,210,632	-		HGI48_RS05735	0.23	-2.6
1,210,632	-		HGI48_RS05735	0.23	+0.8
1,210,632	-		HGI48_RS05735	0.23	+0.5
1,210,770	-		HGI48_RS05735	0.31	+0.1
1,210,778	+		HGI48_RS05735	0.31	-2.0
1,210,778	+				-0.6
1,210,779	-		HGI48_RS05735	0.31	+0.5
1,210,780	+		HGI48_RS05735	0.31	+0.5
1,210,781	-		HGI48_RS05735	0.31	+0.4
1,210,781	-		HGI48_RS05735	0.31	+2.0
1,210,928	+		HGI48_RS05735	0.40	-2.6
1,210,928	+		HGI48_RS05735	0.40	+0.1
1,210,929	-		HGI48_RS05735	0.40	-1.4
1,211,065	-		HGI48_RS05735	0.47	-2.7
1,211,069	+				-0.6
1,211,069	+		HGI48_RS05735	0.47	-2.2
1,211,070	-				-0.6
1,211,070	-		HGI48_RS05735	0.48	-1.8
1,211,070	-		HGI48_RS05735	0.48	-0.8
1,211,070	-		HGI48_RS05735	0.48	+1.0
1,211,077	+		HGI48_RS05735	0.48	-0.9
1,211,084	+		HGI48_RS05735	0.48	+1.0
1,211,084	+		HGI48_RS05735	0.48	-0.6
1,211,085	-		HGI48_RS05735	0.48	-1.4
1,211,085	-		HGI48_RS05735	0.48	+1.9
1,211,085	-		HGI48_RS05735	0.48	+1.4
1,211,168	-		HGI48_RS05735	0.53	-1.8